mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.38.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 122 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Xen36_12 | 131 | 0 | A | T | 70.8% | 827.9 / inf | 636 | intergenic (–/+490) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| * | Xen36_12 | 132 | 0 | A | T | 70.5% | 823.1 / inf | 636 | intergenic (–/+489) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| * | Xen36_16 | 90 | 0 | T | A | 63.6% | 110.5 / 168.9 | 165 | intergenic (+16/‑1) | Xen36_02455/Xen36_02456 | tRNA‑Val(tac)/tRNA‑Thr(tgt) |
| * | Xen36_16 | 187 | 0 | T | C | 52.5% | 3.7 / 232.6 | 221 | noncoding (16/76 nt) | Xen36_02457 | tRNA‑Lys(ttt) |
| * | Xen36_16 | 171 | 0 | A | T | 49.2% | 55.6 / 283.3 | 191 | intergenic (+5/‑1) | Xen36_02456/Xen36_02457 | tRNA‑Thr(tgt)/tRNA‑Lys(ttt) |
| * | Xen36_4 | 214,478 | 0 | C | T | 49.0% | 8.2 / 104.9 | 100 | G22G (GGG→GGA) | sauU | putative sulfoacetate transporter SauU |
| * | Xen36_16 | 167 | 1 | . | C | 48.7% | 10.6 / inf | 193 | intergenic (+1/‑5) | Xen36_02456/Xen36_02457 | tRNA‑Thr(tgt)/tRNA‑Lys(ttt) |
| * | Xen36_16 | 169 | 0 | G | T | 48.7% | 93.8 / 283.9 | 193 | intergenic (+3/‑3) | Xen36_02456/Xen36_02457 | tRNA‑Thr(tgt)/tRNA‑Lys(ttt) |
| * | Xen36_16 | 168 | 0 | G | T | 48.4% | 92.8 / 284.4 | 193 | intergenic (+2/‑4) | Xen36_02456/Xen36_02457 | tRNA‑Thr(tgt)/tRNA‑Lys(ttt) |
| * | Xen36_16 | 170 | 0 | A | T | 48.4% | 64.8 / 277.7 | 192 | intergenic (+4/‑2) | Xen36_02456/Xen36_02457 | tRNA‑Thr(tgt)/tRNA‑Lys(ttt) |
| * | Xen36_3 | 250,723 | 0 | G | A | 45.5% | 88.2 / inf | 363 | intergenic (+693/–) | recR/– | Recombination protein RecR/– |
| * | Xen36_18 | 3,935 | 0 | A | C | 43.6% | 106.3 / 42.7 | 103 | S56S (TCA→TCC) | Xen36_02552 | hypothetical protein |
| * | Xen36_12 | 125 | 0 | A | T | 39.8% | 452.0 / inf | 633 | intergenic (–/+496) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| * | Xen36_11 | 30 | 0 | T | C | 39.8% | 71.8 / 65.4 | 84 | intergenic (–/‑602) | –/Xen36_02213 | –/S‑formylglutathione hydrolase |
| * | Xen36_12 | 52,360 | 0 | C | T | 39.6% | 194.7 / 186.4 | 225 | intergenic (+3102/–) | azo1/– | FMN‑dependent NADPH‑azoreductase/– |
| * | Xen36_13 | 27,142 | 0 | G | C | 39.5% | 272.4 / 172.5 | 220 | G69R (GGC→CGC) | lipR | Putative acetyl‑hydrolase LipR |
| * | Xen36_12 | 115 | 0 | T | C | 39.3% | 426.9 / inf | 705 | intergenic (–/+506) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| * | Xen36_12 | 122 | 0 | G | . | 39.0% | 1034.3 / inf | 657 | intergenic (–/+499) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| * | Xen36_1 | 162,536 | 0 | T | G | 38.9% | 212.9 / inf | 298 | intergenic (+305/‑523) | trxB/Xen36_00155 | Thioredoxin reductase/Nucleotide‑binding protein |
| * | Xen36_12 | 123 | 0 | T | . | 38.3% | 1170.5 / inf | 648 | intergenic (–/+498) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| Marginal new junction evidence (lowest skew 10 of 96 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen36_1 | 162640 = | 108 (0.720) | 39 (0.370) +44 bp |
28/210 | 3.2 | 32.9% | intergenic (+409/‑419) | trxB/Xen36_00155 | Thioredoxin reductase/Nucleotide‑binding protein |
| ? | Xen36_1 | = 169278 | 118 (0.780) | intergenic (+295/+151) | mleS/Xen36_00161 | Malolactic enzyme/Epimerase family protein | |||||
| * | ? | Xen36_1 | = 86 | 65 (0.430) | 67 (0.410) +A |
42/296 | 3.2 | 40.3% | intergenic (–/‑20) | –/nth_1 | –/Endonuclease III |
| ? | Xen36_14 | 47623 = | 135 (0.740) | intergenic (+108/–) | argS/– | Arginine‑‑tRNA ligase/– | |||||
| * | ? | Xen36_1 | = 169278 | 118 (0.780) | 55 (0.440) +53 bp |
23/192 | 3.6 | 35.4% | intergenic (+295/+151) | mleS/Xen36_00161 | Malolactic enzyme/Epimerase family protein |
| ? | Xen36_5 | 2080 = | 194 (0.830) | intergenic (‑285/‑190) | Xen36_01413/Xen36_01414 | hypothetical protein/hypothetical protein | |||||
| * | ? | Xen36_1 | = 169230 | 107 (0.710) | 61 (0.450) +45 bp |
23/208 | 4.1 | 36.8% | intergenic (+247/+199) | mleS/Xen36_00161 | Malolactic enzyme/Epimerase family protein |
| ? | Xen36_5 | 2080 = | 194 (0.830) | intergenic (‑285/‑190) | Xen36_01413/Xen36_01414 | hypothetical protein/hypothetical protein | |||||
| * | ? | Xen36_1 | = 162706 | 75 (0.500) | 51 (0.290) +TGACTAGAGTTGAAA |
31/268 | 4.2 | 60.2% | intergenic (+475/‑353) | trxB/Xen36_00155 | Thioredoxin reductase/Nucleotide‑binding protein |
| ? | Xen36_5 | = 192873 | 0 (0.000) | intergenic (+171/–) | Xen36_01570/– | hypothetical protein/– | |||||
| * | ? | Xen36_2 | 226830 = | 117 (0.840) | 51 (0.300) +TGACTAGAGTTGAAA |
31/268 | 4.3 | 49.2% | intergenic (+140/‑333) | lepA/hemW | Elongation factor 4/Heme chaperone HemW |
| ? | Xen36_5 | = 192873 | 0 (0.000) | intergenic (+171/–) | Xen36_01570/– | hypothetical protein/– | |||||
| * | ? | Xen36_23 | 1 = | 0 (0.000) | 282 (0.530) | 108/284 | 4.4 | 48.9% | intergenic (–/+1574) | –/Xen36_02602 | –/hypothetical protein |
| ? | Xen36_23 | = 216 | 590 (1.110) | intergenic (–/+1359) | –/Xen36_02602 | –/hypothetical protein | |||||
| * | ? | Xen36_10 | = 106197 | 0 (0.000) | 53 (0.400) +29 bp |
29/240 | 4.4 | 57.1% | intergenic (‑89/–) | Xen36_02212/– | tRNA‑Gln(ttg)/– |
| ? | Xen36_16 | = 77 | 99 (0.650) | intergenic (+3/‑14) | Xen36_02455/Xen36_02456 | tRNA‑Val(tac)/tRNA‑Thr(tgt) | |||||
| * | ? | Xen36_1 | 169208 = | 110 (0.730) | 38 (0.290) +CAGAAGCTGGTGGAAAGC |
29/262 | 4.4 | 32.8% | intergenic (+225/+221) | mleS/Xen36_00161 | Malolactic enzyme/Epimerase family protein |
| ? | Xen36_1 | 256545 = | 67 (0.440) | intergenic (+212/+237) | gluD/glpQ_1 | NAD‑specific glutamate dehydrogenase/Glycerophosphodiester phosphodiesterase | |||||
| * | ? | Xen36_14 | 47623 = | 135 (0.740) | 69 (0.390) +TCC |
48/292 | 4.5 | 51.1% | intergenic (+108/–) | argS/– | Arginine‑‑tRNA ligase/– |
| ? | Xen36_14 | = 47761 | 0 (0.000) | intergenic (+246/–) | argS/– | Arginine‑‑tRNA ligase/– | |||||