New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Xen36_19 1 =0 (0.000)929 (0.930) 170/188 0.2 100% intergenic (–/‑211) –/Xen36_02569 –/hypothetical protein
?Xen36_19 = 8034 0 (0.000)intergenic (+503/–) Xen36_02580/– hypothetical protein/–

Only 100 of 1392 total aligned reads displayed.

CTTTTTGTCTCTTGAATTTGTGAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen36_19/7885‑8089
                                                                                                                                                     |                                                                                                                                                     
cTTTTTGTCTCTTGAATTTGCGAGGGGAAAATTGCTCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATaaa                                                                                                                                                       >  1:1329586/1‑150 (MQ=255)
 tttttGTCTCTTGAATTTGTGAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAg                                                                                                                                                      >  1:95889/1‑150 (MQ=255)
   tttGTCTCTTGAATTTGTGAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCGTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGc                                                                                                                                                    <  1:1866061/150‑1 (MQ=255)
      gTCTCTTGAATTTGTGAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGATGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAg                                                                                                                                                      <  1:701835/145‑1 (MQ=255)
      gTCTCTTGAATTTGTGAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAg                                                                                                                                                      <  1:1424746/145‑1 (MQ=255)
      gTCTCTTGAATTTGTGAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAAc                                                                                                                                                 <  1:145434/150‑1 (MQ=255)
      gTCTCTTGAATTTGTGAGGGGAAAATTGCCCCGAACCTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAATCTTAGAGGGACGATACATTTGAGATTTTAAAGGTAGCTTCTTGTAACCATAAAGGCAAc                                                                                                                                                 >  1:831333/1‑150 (MQ=255)
               aTTTGTGAGGGGAAAATTGCCCCGAACTTTTTCATATCTTTTTATACACCTTTTTAAAACCCTCTTTAGGGGGTGTTTGAGCCCTAGAGGGAAAACGCACTTGAGATTTTCAAAGCAACCTTTTTCCACCATAAAAGCAACttgttttcc                                                                                                                                        >  1:2024875/1‑143 (MQ=255)
                tttGTGAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAAc                                                                                                                                       >  1:1112990/1‑150 (MQ=255)
                tttGTGAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAAc                                                                                                                                       <  1:1201478/150‑1 (MQ=255)
                tttGTGAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATCTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAAc                                                                                                                                       >  1:1262980/1‑150 (MQ=255)
                tttGTGAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTGTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGATGGACAATGCATTTGAGACTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAAc                                                                                                                                       <  1:303578/150‑1 (MQ=255)
                  tgtgAGGGGAAAATTGCCCCGAGCTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCa                                                                                                                                     >  1:1034217/1‑150 (MQ=255)
                    tgAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATATATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATa                                                                                                                                   >  1:1786629/1‑150 (MQ=255)
                      aGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATaaa                                                                                                                                 >  1:3365220/1‑150 (MQ=255)
                         ggAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGc                                                                                                                              >  1:2843524/1‑150 (MQ=255)
                           aaaaTTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCaa                                                                                                                            <  1:270906/150‑1 (MQ=255)
                            aaaTTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAAc                                                                                                                           <  1:2491280/150‑1 (MQ=255)
                              aTTGCCCCGAACTGTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACtt                                                                                                                         >  1:922839/1‑150 (MQ=255)
                                 gCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACttttt                                                                                                                      >  1:2962236/1‑150 (MQ=255)
                                  ccccGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTg                                                                                                                     <  1:464463/150‑1 (MQ=255)
                                  ccccGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTg                                                                                                                     >  1:3127483/1‑150 (MQ=255)
                                  ccccGAACGTTTGAACATCTTTTTATAAACCGTGTTAAACACCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAAGTCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACttttgg                                                                                                                     <  1:3600776/150‑3 (MQ=21)
                                   cccGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACTATAAAGGCAACTTTTTGt                                                                                                                    >  1:389796/1‑150 (MQ=255)
                                    ccGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTa                                                                                                                   >  1:3325384/1‑150 (MQ=255)
                                       aaCTTTTTAATGTCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAAcc                                                                                                                >  1:1844253/1‑150 (MQ=255)
                                         cTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCAt                                                                                                              >  1:1972737/1‑150 (MQ=255)
                                         cTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCAt                                                                                                              >  1:418329/1‑150 (MQ=255)
                                           ttttAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATaa                                                                                                            >  1:3189048/1‑150 (MQ=255)
                                                atatCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCa                                                                                                       <  1:3343533/150‑1 (MQ=255)
                                                   tCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACt                                                                                                    >  1:1540414/1‑150 (MQ=255)
                                                    cTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACtt                                                                                                   >  1:55963/1‑150 (MQ=255)
                                                        ttATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttg                                                                                               >  1:2550587‑M2/1‑94 (MQ=255)
                                                         tataAATCTTTTTAAAACCCTTGTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgt                                                                                              >  1:2156193‑M2/1‑93 (MQ=255)
                                                          ataAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACttt                                                                                                  <  1:3479081/145‑1 (MQ=255)
                                                           taAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaa                                                                                            <  1:1563943‑M2/150‑60 (MQ=255)
                                                            aaaTCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaac                                                                                           <  1:2193707‑M2/150‑61 (MQ=255)
                                                                 tttttAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataa                                                                                      <  1:854150‑M2/150‑66 (MQ=255)
                                                                 tttttAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataa                                                                                      <  1:2207347‑M2/150‑66 (MQ=255)
                                                                  ttttAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaa                                                                                     <  1:2057984‑M2/150‑67 (MQ=255)
                                                                   tttAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaag                                                                                    <  1:801253‑M2/150‑68 (MQ=255)
                                                                     tAAAACCCTTTTTAGGGGGTGTTTGAACATTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggc                                                                                  <  1:2106611‑M2/150‑70 (MQ=255)
                                                                       aaaCCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaa                                                                                >  1:1389023‑M2/1‑79 (MQ=255)
                                                                       aaaCCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaa                                                                                <  1:2598319‑M2/150‑72 (MQ=255)
                                                                        aaCCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaac                                                                               <  1:244132‑M2/150‑73 (MQ=255)
                                                                        aaCCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaac                                                                               >  1:3497848‑M2/1‑78 (MQ=255)
                                                                          cccTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactt                                                                             <  1:2874383‑M2/150‑75 (MQ=255)
                                                                           ccTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaacttt                                                                            <  1:2262491‑M2/150‑76 (MQ=255)
                                                                           ccTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaacttt                                                                            <  1:308744‑M2/150‑76 (MQ=255)
                                                                            cTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttt                                                                           >  1:136023‑M2/1‑74 (MQ=255)
                                                                              ttttAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaacttttta                                                                         <  1:3410279‑M2/150‑79 (MQ=255)
                                                                               tttAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaa                                                                        >  1:3756924‑M2/1‑71 (MQ=255)
                                                                                  aGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatag                                                                     >  1:1072171‑M2/1‑68 (MQ=255)
                                                                                   gggggTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagc                                                                    <  1:1815263‑M2/150‑84 (MQ=255)
                                                                                      ggTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgag                                                                 >  1:2301054‑M2/1‑64 (MQ=255)
                                                                                        tgtTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttctgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagtt                                                               <  1:1889171‑M2/150‑89 (MQ=255)
                                                                                         gtTTAAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaaatttttgtaaccataaaggcaactttttaatagcgagttg                                                              <  1:600535‑M2/150‑90 (MQ=255)
                                                                                           ttGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaacagcaagttgcc                                                            <  1:1292200‑M2/150‑92 (MQ=255)
                                                                                           ttGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactctttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggc                                                            >  1:661924‑M2/1‑59 (MQ=255)
                                                                                            tGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcct                                                           >  1:3163075‑M2/1‑58 (MQ=255)
                                                                                            tGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcct                                                           >  1:1686386‑M2/1‑58 (MQ=255)
                                                                                             gAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctt                                                          >  1:3447611‑M2/1‑57 (MQ=255)
                                                                                                ccTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttat                                                       <  1:1510580‑M2/150‑97 (MQ=255)
                                                                                                 cTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatg                                                      >  1:771060‑M2/1‑53 (MQ=255)
                                                                                                 cTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatg                                                      <  1:2614647‑M2/150‑98 (MQ=255)
                                                                                                 cTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatg                                                      >  1:1926801‑M2/1‑53 (MQ=255)
                                                                                                  ttAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggaaactttttaatagcgagttgcctttatga                                                     <  1:2002221‑M2/150‑99 (MQ=255)
                                                                                                   tAGAGGGACAATGCATCTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcagctttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggt                                                    >  1:1220353‑M2/1‑51 (MQ=255)
                                                                                                       gggACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggaaactttttaatagcgagttgcctttatggttcca                                                <  1:1732042‑M2/150‑104 (MQ=255)
                                                                                                           cAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaatta                                            <  1:2806793‑M2/150‑108 (MQ=255)
                                                                                                            aaTGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggtaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattat                                           >  1:3532302‑M2/1‑42 (MQ=255)
                                                                                                                cATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccatgaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgcta                                       >  1:2084682‑M2/1‑38 (MQ=255)
                                                                                                                 aTTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttntaaccataaaggcaactttttgtaaccataaaggcaacttgttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctat                                      <  1:3630047‑M2/150‑114 (MQ=255)
                                                                                                                    tGAGATTTTAAAGACAACTTTTTGTAACCATAGAggcaactttttgtaaccataaaggcaactttttgtaaccataaangcaacttttttgtaaccataaaggcaactttttaatagcgagttgaatttatggttacaattatgctatta                                   <  1:3561601‑M2/150‑117 (MQ=255)
                                                                                                                        aTTTTAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggt                               <  1:2726674‑M2/150‑121 (MQ=255)
                                                                                                                         ttttAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggtt                              <  1:522789‑M2/150‑122 (MQ=255)
                                                                                                                         ttttAAAGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggtt                              <  1:619870‑M2/150‑122 (MQ=255)
                                                                                                                           ttAAAGGCAACTTTTTATAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggtttt                            <  1:896842‑M2/150‑124 (MQ=255)
                                                                                                                             aaaGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaa                          >  1:3728487‑M2/1‑25 (MQ=255)
                                                                                                                             aaaGGCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcatttatggttacaattatgctattataggttttaa                          <  1:3219382‑M2/150‑126 (MQ=255)
                                                                                                                                ggCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattg                       >  1:1580760‑M2/1‑22 (MQ=255)
                                                                                                                                ggCAACTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattg                       >  1:1483374‑M2/1‑22 (MQ=255)
                                                                                                                                   aaCTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctatcataggttttaattgaat                    >  1:368315‑M2/1‑19 (MQ=255)
                                                                                                                                     cTTTTTGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaattt                  <  1:2403853‑M2/150‑134 (MQ=255)
                                                                                                                                        tttGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttc               <  1:1166642‑M2/150‑137 (MQ=255)
                                                                                                                                        tttGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttc               >  1:736121‑M2/1‑14 (MQ=255)
                                                                                                                                        tttGTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttc               >  1:268591‑M2/1‑14 (MQ=255)
                                                                                                                                           gTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcatctttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttccta            >  1:1606912‑M2/1‑11 (MQ=255)
                                                                                                                                           gTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttctta            >  1:276843‑M2/1‑11 (MQ=255)
                                                                                                                                           gTAACCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttt                 >  1:2228278‑M2/1‑11 (MQ=255)
                                                                                                                                              aCCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttacttgaatttttcttatat         <  1:3292217‑M2/150‑143 (MQ=255)
                                                                                                                                              aCCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttcttatat         >  1:1003695‑M2/1‑8 (MQ=255)
                                                                                                                                              aCCATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaacttcttgtaaccataaaggcaactttttaatagcgagttgtctttatggttgcaattatgttattataggttttaattgaatttttcttatat         <  1:1651064‑M2/150‑143 (MQ=255)
                                                                                                                                                cATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttcttatatca       <  1:32719‑M2/150‑145 (MQ=255)
                                                                                                                                                cATAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttcttatatca       <  1:1629146‑M2/150‑145 (MQ=255)
                                                                                                                                                 aTAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttcttatatcat      <  1:437042‑M2/150‑146 (MQ=255)
                                                                                                                                                 aTAAAggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttcttatatcat      <  1:2911694‑M2/150‑146 (MQ=255)
                                                                                                                                                   aaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctatcataggttttaattgaatttttcttatatcatta    >  1:2130713‑M2/1‑3 (MQ=255)
                                                                                                                                                    aaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttcttatatcattac   <  1:487810‑M2/150‑149 (MQ=255)
                                                                                                                                                     aggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttgtaaccataaaggcaactttttaatagcgagttgcctttatggttacaattatgctattataggttttaattgaatttttcttatatcattaaa  <  1:3010421‑M2/150‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CTTTTTGTCTCTTGAATTTGTGAGGGGAAAATTGCCCCGAACTTTTTAATATCTTTTTATAAATCTTTTTAAAACCCTTTTTAGGGGGTGTTTGAACCTTAGAGGGACAATGCATTTGAGATTTTAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTTGTAACCATAAAGGCAACTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen36_19/7885‑8089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.