breseq  version 0.35.4  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutation
evidence position mutation annotation gene description

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_004302 1 149 149 NA [0] [1] 2 [r1tp01] [r1tp01]
* * ÷ NC_004302 159 567 409 2 [1] [1] 2 r1tp01 Integrase
* * ÷ NC_004302 812 854 43 2 [0] [1] 2 r1tp01 Integrase
* * ÷ NC_004302 1238 1312 75 2 [1] [1] 2 r1tp01/r1tp02 Integrase/ORF2
* * ÷ NC_004302 2762 2907 146 4 [1] [1] 2 rro/tec Repressor protein/tec
* * ÷ NC_004302 2976 3909 934 2 [1] [0] 2 tec–[r1tp05] tec,[r1tp05]
* * ÷ NC_004302 3979 4485 507 2 [0] [1] 2 [r1tp05]–[r1tp07] [r1tp05],r1tp06,[r1tp07]
* * ÷ NC_004302 4499 8498 4000 2 [1] [1] 2 [r1tp07]–[r1tp12] [r1tp07],r1tp08,r1tp09,r1tp10,r1tp11,[r1tp12]
* * ÷ NC_004302 8559 11059 2501 2 [1] [1] 2 [r1tp13]–[r1tp20] [r1tp13],r1tp14,r1tp15,r1tp16,r1tp17,r1tp18,[r1tp19],[r1tp20]
* * ÷ NC_004302 11194 11511 318 2 [1] [1] 2 [r1tp20]–[r1tp21] [r1tp20],[r1tp21]
* * ÷ NC_004302 11580 11674 95 2 [1] [1] 2 r1tp21 ORF21
* * ÷ NC_004302 11744 12304 561 2 [1] [1] 2 r1tp22 ORF22
* * ÷ NC_004302 12329 14096 1768 2 [1] [1] 2 [r1tp22]–[r1tp25] [r1tp22],r1tp23,r1tp24,[r1tp25]
* * ÷ NC_004302 14165 15638 1474 2 [0] [1] 2 [r1tp25]–[r1tp27] [r1tp25],r1tp26,[r1tp27]
* * ÷ NC_004302 15648 16465 818 2 [1] [1] 2 [r1tp27]–[r1tp28] [r1tp27],[r1tp28]
* * ÷ NC_004302 16536 16850 315 2 [1] [1] 2 r1tp28 ORF28
* * ÷ NC_004302 16924 17061 138 2 [1] [1] 2 [r1tp28] [r1tp28]
* * ÷ NC_004302 17114 17212 99 2 [1] [1] 2 r1tp29 putative terminase
* * ÷ NC_004302 17343 17365 23 2 [1] [1] 2 r1tp29 putative terminase
* * ÷ NC_004302 17434 17480 47 2 [1] [1] 2 r1tp29 putative terminase
* * ÷ NC_004302 17626 17764 139 2 [1] [1] 2 r1tp29 putative terminase
* * ÷ NC_004302 17934 18001 68 2 [1] [1] 2 r1tp29 putative terminase
* * ÷ NC_004302 18102 18160 59 2 [1] [1] 2 r1tp29 putative terminase
* * ÷ NC_004302 18266 18971 706 2 [1] [1] 2 [r1tp29]–[r1tp30] [r1tp29],[r1tp30]
* * ÷ NC_004302 19180 19254 75 2 [1] [1] 2 r1tp31 Structural protein
* * ÷ NC_004302 19378 19433 56 2 [1] [0] 2 r1tp31 Structural protein
* * ÷ NC_004302 19502 19536 35 3 [1] [0] 2 r1tp31 Structural protein
* * ÷ NC_004302 19850 19882 33 2 [1] [1] 2 r1tp31 Structural protein
* * ÷ NC_004302 20019 20049 31 2 [1] [1] 2 r1tp32 ORF32
* * ÷ NC_004302 20133 20302 170 2 [1] [1] 2 [r1tp32]–[r1tp33] [r1tp32],[r1tp33]
* * ÷ NC_004302 20456 20606 151 2 [1] [1] 2 r1tp33 ORF33
* * ÷ NC_004302 20690 20781 92 2 [1] [1] 2 r1tp34 ORF34
* * ÷ NC_004302 20794 20936 143 2 [1] [1] 2 r1tp34 ORF34
* * ÷ NC_004302 21006 21071 66 2 [1] [1] 2 r1tp35 ORF35
* * ÷ NC_004302 21147 21358 212 2 [1] [1] 2 [r1tp35]–[r1tp36] [r1tp35],[r1tp36]
* * ÷ NC_004302 21538 21680 143 2 [1] [1] 2 [r1tp36]–[r1tp37] [r1tp36],[r1tp37]
* * ÷ NC_004302 21939 22220 282 2 [1] [1] 2 [r1tp37]–[r1tp38] [r1tp37],[r1tp38]
* * ÷ NC_004302 22232 22479 248 2 [1] [1] 2 [r1tp38] [r1tp38]
* * ÷ NC_004302 22526 22637 112 2 [1] [1] 2 [r1tp39] [r1tp39]
* * ÷ NC_004302 22788 22835 48 2 [1] [1] 3 r1tp39 ORF39
* * ÷ NC_004302 22923 22956 34 2 [1] [1] 3 r1tp40 ORF40
* * ÷ NC_004302 23031 23183 153 2 [1] [1] 2 r1tp40 ORF40
* * ÷ NC_004302 23307 23461 155 2 [1] [1] 2 r1tp40 ORF40
* * ÷ NC_004302 23531 23605 75 2 [1] [1] 2 [r1tp41] [r1tp41]
* * ÷ NC_004302 23674 23740 67 2 [1] [1] 2 r1tp41 ORF41
* * ÷ NC_004302 23863 23968 106 2 [1] [1] 2 r1tp41 ORF41
* * ÷ NC_004302 24104 24208 105 2 [1] [1] 2 [r1tp41] [r1tp41]
* * ÷ NC_004302 24273 24424 152 2 [1] [1] 2 [r1tp42] [r1tp42]
* * ÷ NC_004302 24493 24518 26 2 [1] [0] 2 r1tp42 ORF42
* * ÷ NC_004302 24588 25078 491 3 [1] [1] 2 r1tp42 ORF42
* * ÷ NC_004302 25139 25428 290 2 [1] [1] 2 r1tp42 ORF42
* * ÷ NC_004302 25515 25537 23 2 [1] [1] 2 r1tp42 ORF42
* * ÷ NC_004302 25608 25674 67 2 [1] [1] 2 r1tp42 ORF42
* * ÷ NC_004302 25815 26632 818 2 [1] [1] 2 [r1tp42]–[r1tp43] [r1tp42],[r1tp43]
* * ÷ NC_004302 26789 26886 98 2 [1] [0] 3 r1tp43 ORF43
* * ÷ NC_004302 27142 27244 103 2 [1] [1] 2 [r1tp43]–[r1tp44] [r1tp43],[r1tp44]
* * ÷ NC_004302 27288 27538 251 2 [1] [1] 2 r1tp44 ORF44
* * ÷ NC_004302 27760 27871 112 2 [1] [1] 2 r1tp44 ORF44
* * ÷ NC_004302 27895 27966 72 2 [1] [1] 2 r1tp44 ORF44
* * ÷ NC_004302 28062 28110 49 2 [1] [1] 4 r1tp44 ORF44
* * ÷ NC_004302 28181 28188 8 2 [0] [1] 2 r1tp44 ORF44
* * ÷ NC_004302 28347 28410 64 2 [1] [1] 2 [r1tp44]–[r1tp45] [r1tp44],[r1tp45]
* * ÷ NC_004302 28473 28486 14 2 [1] [1] 2 r1tp45 Structural protein
* * ÷ NC_004302 28678 28710 33 2 [1] [1] 2 r1tp45 Structural protein
* * ÷ NC_004302 28778 28876 99 2 [1] [1] 2 r1tp45 Structural protein
* * ÷ NC_004302 28984 29117 134 2 [1] [1] 2 r1tp45 Structural protein
* * ÷ NC_004302 29611 29855 245 2 [1] [1] 2 [r1tp46]–[r1tp47] [r1tp46],[r1tp47]
* * ÷ NC_004302 29909 30205 297 2 [1] [1] 2 r1tp47 ORF47
* * ÷ NC_004302 30374 30424 51 2 [1] [1] 2 r1tp47 ORF47
* * ÷ NC_004302 30607 30893 287 2 [1] [1] 2 r1tp47 ORF47
* * ÷ NC_004302 31241 31282 42 2 [1] [1] 2 r1tp47 ORF47
* * ÷ NC_004302 31351 31371 21 2 [1] [0] 2 r1tp47 ORF47
* * ÷ NC_004302 32843 32917 75 2 [1] [1] 2 [r1tp49] [r1tp49]
* * ÷ NC_004302 32987 33246 260 2 [1] [1] 2 r1tp50 r1tp50
* * ÷ NC_004302 33313 33350 38 2 [1] [0] NA r1tp50/– ORF50/–