Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	31241	31282	42	2 [1]	[1] 2	r1tp47	ORF47

TATGTGCCATTGAATGCTGAAGTTGGACATGAAATCCCTATCCAGCTTAAAGGTCAAAGTTCTCAGGCTTACGGAAAT  >  NC_004302/31173‑31250                                                                    |           tATGTGCCATTGAATGCTGAAGTTGGACATGAAATCCCTATCCAGCTTAAAGGTCAAAGTTCTCAGGcatttcca     <  1:6017056/75‑8 (MQ=255)    gtgCCATTGAATGCTGAAGTTGGACATGAAATCCCTATCCAGCTTAAAGGTCAAAGTTCTCAGGGTTACGTAAat  <  1:1088964/75‑1 (MQ=255)                                                                    |           TATGTGCCATTGAATGCTGAAGTTGGACATGAAATCCCTATCCAGCTTAAAGGTCAAAGTTCTCAGGCTTACGGAAAT  >  NC_004302/31173‑31250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑