Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	28678	28710	33	2 [1]	[1] 2	r1tp45	Structural protein

ACGACTGTTGCTAGAAATGATACAACATACGAATTAC‑AATTAGCAACAATTTCCGTAAAAACTAATGCCACCCAAATCACT  >  NC_004302/28697‑28777               |                                                                    aCGACTGTTGCTAGAAATGATACAACATACGAATTAC‑AATTAGCAACAATTTCCGTAAAAACTAATGcacaattg        <  1:493984/75‑8 (MQ=255)        acatcccaaaTGATACAACATACGAATTACAAATTAGCAACAATTTCCGTAAAAACTAATGCCACCCAAATCACt  >  1:5570887/8‑75 (MQ=255)               |                                                                    ACGACTGTTGCTAGAAATGATACAACATACGAATTAC‑AATTAGCAACAATTTCCGTAAAAACTAATGCCACCCAAATCACT  >  NC_004302/28697‑28777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑