Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	28062	28110	49	2 [1]	[1] 4	r1tp44	ORF44

CTGGCAGGCTTAGAACGTGAAGAAATTTATGTTGATGCACGAGATATTCAAAAGCAAACACAGAATGGAAGTGGAAAA  >  NC_004302/27987‑28064                                                                           |    acatatggCTTAGAACGTGAAGAAATTTATGTTGATGCACGAGATATTCAAAAGCAAACACAGAATGGAAGTGGa     >  1:210961/7‑75 (MQ=255)    attcaagtAGAACGTGAAGAAATTTATGTTGATGCACGACATAATCAAAAGCAAACACAGAATGGAAGTGGaaaa  >  1:7330878/8‑75 (MQ=255)                                                                           |    CTGGCAGGCTTAGAACGTGAAGAAATTTATGTTGATGCACGAGATATTCAAAAGCAAACACAGAATGGAAGTGGAAAA  >  NC_004302/27987‑28064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑