Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	28181	28188	8	2 [0]	[1] 2	r1tp44	ORF44

TATTTGTATATGG‑CAAAGATTACGAACTAGGTGACAGAGTACGGTTTACAAGTAAACTATTCAATTTGACAAAAACA  >  NC_004302/28183‑28259       |                                                                        ataaaatataT‑G‑CAAAGATTACGAACTAGGTGACAGAGTACGGTTTACAAGTAAACTATTCAATTTGACAAAAAc   >  1:2421178/7‑75 (MQ=255)    ttGTATAAGGACAAAGATTACGAACTAGGTGACAGAGTACGGTTTACAAGTAAACTATTCAATTTGACaaaacat  >  1:4124490/1‑72 (MQ=255)       |                                                                        TATTTGTATATGG‑CAAAGATTACGAACTAGGTGACAGAGTACGGTTTACAAGTAAACTATTCAATTTGACAAAAACA  >  NC_004302/28183‑28259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑