Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	28678	28710	33	2 [1]	[1] 2	r1tp45	Structural protein

TGTTGCCTCATCAATACAAGATCGTGTTGATTCTATTGTTTTACGAATGGATAAAAATGCAAGAACTACACAATTGTTCTATAAACCAGG  >  NC_004302/28603‑28692                                                                           |                agtaaccTCATCAATACAAGATCGTGTTGATTCTATTGTTTTACGAATGGATAAAAATGCAAGAACTACACAAtt                 >  1:2965343/6‑75 (MQ=255)                aCAAGATCGTGTTGATTCTATTGTTTTACGAATGGATAAAAATGCAAGAACTACACAATTGTTCTATAAACCAga  <  1:2093471/75‑2 (MQ=255)                                                                           |                TGTTGCCTCATCAATACAAGATCGTGTTGATTCTATTGTTTTACGAATGGATAAAAATGCAAGAACTACACAATTGTTCTATAAACCAGG  >  NC_004302/28603‑28692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑