Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	28984	29117	134	2 [1]	[1] 2	r1tp45	Structural protein

TTTAAAAATCTTAAGAATCAATTAGATGTTAACCAGGCTTCAAATTTACAAAATCAAATTGATAATCTAGGTAATGAGAAAGCTAATGATCATGAGGTTGTTCATAAAACTGGTGATGAATCAATTGCTGGAAATA  >  NC_004302/28916‑29051                                                                    |                                                                     tttAAAAATCTTAAGAATCAATTAGATGTTAAGCAGGCTTCAAATTTACAAAATCAAATTGATAATCtctggcat                                                               <  1:4409697/75‑8 (MQ=255)                                                              aTAATCTAGGTAATGAGAAAGCTAATGATCATGAGGTTGTTCATAAAACTGGTGATGAATCAATTGCtctcagcc  <  1:6910162/75‑8 (MQ=255)                                                                    |                                                                     TTTAAAAATCTTAAGAATCAATTAGATGTTAACCAGGCTTCAAATTTACAAAATCAAATTGATAATCTAGGTAATGAGAAAGCTAATGATCATGAGGTTGTTCATAAAACTGGTGATGAATCAATTGCTGGAAATA  >  NC_004302/28916‑29051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑