Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	22923	22956	34	2 [1]	[1] 3	r1tp40	ORF40

AACAGAATTAGGACAAGCTTATGTGCAAATTATGCCATCTGCCAAAGGAATATCAGGTTCAATGTCTGGTATCTTAGACCCA  >  NC_004302/22848‑22929                                                                           |        aatggtaTTAGAACAAGCTTATGTGCAAATTATGCCATCTGCCAAAGGAATATCAGGTTCAATGTCTGGTATCtt         >  1:5849542/7‑75 (MQ=255)        tgcggACAAGCTTATGTGCAAATTATGCCATCTGCCAAAGGAATATCAGGTTCAATGTCTGGTATCTTAGACCCa  >  1:7540035/4‑75 (MQ=255)                                                                           |        AACAGAATTAGGACAAGCTTATGTGCAAATTATGCCATCTGCCAAAGGAATATCAGGTTCAATGTCTGGTATCTTAGACCCA  >  NC_004302/22848‑22929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑