Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	24493	24518	26	2 [1]	[0] 2	r1tp42	ORF42

ATGTTTTGGGGAACTTATCACTAGGCCGTGATTTGCAAGGGCCATTGAATGCGTTAGTGTCAACGACATCAACAT  >  NC_004302/24513‑24587       |                                                                     tcatgctGGGGAACTTATCACTAGGCCGTGATTTGCAAGGGCCATTGAATGCGTTAGTGTCAACGACATCAACAt  >  1:3611946/7‑75 (MQ=255) tcatgctGGGGAACTTATCACTAGGCCGTGATTTGCAAGGGCCATTGAATGCGTTAGTGTCAACGACATCAACAt  >  1:5727188/7‑75 (MQ=255)       |                                                                     ATGTTTTGGGGAACTTATCACTAGGCCGTGATTTGCAAGGGCCATTGAATGCGTTAGTGTCAACGACATCAACAT  >  NC_004302/24513‑24587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑