Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	19502	19536	35	3 [1]	[0] 2	r1tp31	Structural protein

CGCGGTAGAGTTGTTAACTGGTGTTGATGCTGATGTAACTGGTATCGCAATCAATCCATCATTCCGTTCAGCCCTCGCT  >  NC_004302/19533‑19611     |                                                                           acatgTAGAGTTGTTAACTGGTGTTGATGCTGATGTAACTGGTATCGCAATCAATCCATCATTCCGTTCAGCCCt      >  1:4084275/5‑75 (MQ=255)     gTAGAGTTGTTAACTGGTGTTGATGCTGATGTAACTGGTATCGCAATCAATCCATCATTCCGTTCAGCCCTCGCt  >  1:1851529/1‑75 (MQ=255)     |                                                                           CGCGGTAGAGTTGTTAACTGGTGTTGATGCTGATGTAACTGGTATCGCAATCAATCCATCATTCCGTTCAGCCCTCGCT  >  NC_004302/19533‑19611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑