Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	28062	28110	49	2 [1]	[1] 4	r1tp44	ORF44

CAGATTCACAATATAAAGCAGCTTTAACAAGTCGTGGAA‑TTGAAAAACTTGCAGAACAAGAAGAAGTGCTCACGATAAATGGAGATATCGATTTAGAAAGTGA  >  NC_004302/28078‑28180                                  |                                                                       agattgaacaATATAAAGCAGCTTTAACAAGTCGTGGAA‑TTGAAAAACTTGCAGAACAAGAAGAAGTGCTCACGa                              >  1:2506642/8‑75 (MQ=255)                           tataaaggTGGAA‑TTGAAAAACTTGCAGAACAAGAAGAAGTGCTCACGATAAATGGAGATATCGATTTAGAAAGt    >  1:1131290/8‑75 (MQ=255)                              atgggTGGAATTTGAAAAACTTGTAGAACAAGAAGAAGTGCTCACGATAAATGGAGATATCGATTTAGAAAGTGa  >  1:3793861/5‑75 (MQ=255)                              atgggTGGAATTTGAAAAACTTGTAGAACAAGAAGAAGTGCTCACGATAAATGGAGATATCGATTTAGAAAGTGa  >  1:3928959/5‑75 (MQ=255)                                  |                                                                       CAGATTCACAATATAAAGCAGCTTTAACAAGTCGTGGAA‑TTGAAAAACTTGCAGAACAAGAAGAAGTGCTCACGATAAATGGAGATATCGATTTAGAAAGTGA  >  NC_004302/28078‑28180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑