Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_004302 31351 31371 21 2 [1] [0] 2 r1tp47 ORF47

TTATTAGTCAGGCTAATTATATTACTAAACAAAGTGATTTAGGTAAAACGATTCGTATAAGCGCTCCAATACAAATAGGCTCTAAATATAAAACTTT  >  NC_004302/31276‑31372
                                                                          |                      
tagatattCAGGCTAATTATATTACTAAACAAAGTGATTTAGGTAAAACGATTCGTATAAGCGCTCCAATACaaa                        >  1:6718201/8‑75 (MQ=255)
                      tACTAAACAAAGTGATTTAGGTAAAACGATTCGTATATGCGCTCCAATACAAATAGGCTCTAAATATaatgttac  <  1:3168452/75‑7 (MQ=255)
                                                                          |                      
TTATTAGTCAGGCTAATTATATTACTAAACAAAGTGATTTAGGTAAAACGATTCGTATAAGCGCTCCAATACAAATAGGCTCTAAATATAAAACTTT  >  NC_004302/31276‑31372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑