Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	159	567	409	2 [1]	[1] 2	r1tp01	Integrase

CTTAATGACATTATTATCAAACTTAATATCATCCCATACTAAGCCAAAAGCTTCACTGGCTCTCATTCCAGTAATTGAAATTATAAACAGCAT  >  NC_004302/550‑642                   |                                                                           cTTAATGACATTATTATCAAACTTAATATCATCCCATACTAAGCCAAAAGCTTCACTGGCTCTCAATccgtgtgg                    <  1:3348055/75‑7 (MQ=255)                   aaaCTTAATATCATCCCATACTAAGCCAAAAGCTTCACTGGCTCTCATTCCAGTAATTGAAATTATAAACAGCAt  <  1:7386920/75‑1 (MQ=255)                   |                                                                           CTTAATGACATTATTATCAAACTTAATATCATCCCATACTAAGCCAAAAGCTTCACTGGCTCTCATTCCAGTAATTGAAATTATAAACAGCAT  >  NC_004302/550‑642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑