Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	28473	28486	14	2 [1]	[1] 2	r1tp45	Structural protein

ACGTACACGGAGATCGGC‑TTTATGACGCAGATGATTTTATGCGATTTTTTGCAGCGTTCCTGAAAACAGGCGTTGTAATGTC  >  NC_004302/28398‑28479                                                                            |        gattgtgcGGAGATCGGC‑TTTATGACGCAGATGATTTTATGCGATTTTTTGCAGCGTTCCTGAAAACAGGCGTTg         >  1:5359205/8‑75 (MQ=255)         aagattCGGCTTTTATGACGCAGATGATTTTATGCGATTTTTTGCAGCATTCCTGAAAACAGGCGTTGTAATGTc  >  1:1950145/6‑75 (MQ=255)                                                                            |        ACGTACACGGAGATCGGC‑TTTATGACGCAGATGATTTTATGCGATTTTTTGCAGCGTTCCTGAAAACAGGCGTTGTAATGTC  >  NC_004302/28398‑28479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑