Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	812	854	43	2 [0]	[1] 2	r1tp01	Integrase

TTCCCGTT‑ACCTTTAACGACTGCTCGAGTGGTGAAATCTTTTTGCAGTCGTCCCTCTTCAATGAGTGGTTGAAT  >  NC_004302/743‑816                                                                      |      gacccGTTAACCTTTAACGACTGCTCGAGTGGTGAAATCTTTTTGCAGTCGTCCCTCTTCAATGAGTGGtgaaga  >  1:2117150/3‑70 (MQ=255) gacccGTTAACCTTTAACGACTGCTCGAGTGGTGAAATCTTTTTGCAGTCGTCCCTCTTCAATGAGTGGtgaaga  >  1:6515516/3‑70 (MQ=255)                                                                      |      TTCCCGTT‑ACCTTTAACGACTGCTCGAGTGGTGAAATCTTTTTGCAGTCGTCCCTCTTCAATGAGTGGTTGAAT  >  NC_004302/743‑816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑