Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	28984	29117	134	2 [1]	[1] 2	r1tp45	Structural protein

TCTGCCAGTGGTTCGCTTACTTCTAAAATTGTTTCTACAAAAATTGAATCACCAGCAATCAAGCATATCTTTGTAAGAACAGGGAATATGGTTACACTTACTACAG  >  NC_004302/29087‑29192                                |                                                                           tCTGCCAGTGGTTCGCTTACTTCTAAAATTGTTTCTACAAAAATTGAATCACCAGCAATCAAGCATATcaaagaa                                 <  1:3287122/75‑7 (MQ=255)                                tttCTACAAAAATTGAATCACCAGCAATCAAGCATATCTTTGTAAGAACAGGGAATATGGTTACACtttcatatc  <  1:890888/75‑8 (MQ=255)                                |                                                                           TCTGCCAGTGGTTCGCTTACTTCTAAAATTGTTTCTACAAAAATTGAATCACCAGCAATCAAGCATATCTTTGTAAGAACAGGGAATATGGTTACACTTACTACAG  >  NC_004302/29087‑29192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑