Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	1238	1312	75	2 [1]	[1] 2	r1tp01/r1tp02	Integrase/ORF2

CTTGTCGTCAAACTTGAGCGGATTTTTTTGTTTATTTAACTACACCATTATTGAAATCTAAATACATTACCCAGCCGTCA  >  NC_004302/1308‑1387      |                                                                           taagtcgtcAAACTTGAGCGGATTTTTTTGTTTATTTAACTACACCATTATTGAAATCTAAATACATTAccttgc       <  1:7538308/72‑5 (MQ=255)      cgtcAGACTTGAGCGGATTTTTTTGTTTATTTAACTACACCATTATTGAAATCTAAATACATTACCCAGcttaaa  <  1:7113086/75‑6 (MQ=255)      |                                                                           CTTGTCGTCAAACTTGAGCGGATTTTTTTGTTTATTTAACTACACCATTATTGAAATCTAAATACATTACCCAGCCGTCA  >  NC_004302/1308‑1387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑