Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	22788	22835	48	2 [1]	[1] 3	r1tp39	ORF39

AGGAGGAAGTTAATGGCAACAGAATTAGGACAAGCTTATGTGCAAATTATGCCATCTGCCAAAGGAATATCAGGTTCA  >  NC_004302/22831‑22908      |                                                                         caaaggaAGTTAATGGCAACAGAATTAGGACAAGCTTATGTGCAAATTATGCCATCTGCCAAAGGAATATCAGGt     >  1:2496417/4‑75 (MQ=255)    atgaAGTTAATGGCAACAGAATTAGGACAAGCTTATGTGCAAATTATGCCATCTGCCAAAGGAATATCAGGTTCa  >  1:7428664/3‑75 (MQ=255)    atgaAGTTAATGGCAACAGAATTAGGACAAGCTTATGTGCAAATTATGCCATCTGCCAAAGGAATATCAGGTTCa  >  1:7437618/3‑75 (MQ=255)      |                                                                         AGGAGGAAGTTAATGGCAACAGAATTAGGACAAGCTTATGTGCAAATTATGCCATCTGCCAAAGGAATATCAGGTTCA  >  NC_004302/22831‑22908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑