Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	28778	28876	99	2 [1]	[1] 2	r1tp45	Structural protein

GTGGTCTACTCCGTTTGATAATATCAATGTGGATGGTATTGTTGATCAATATAAAGAGA‑TTTTTTCACAAGCAGATGTTCAATTTCAGAAATGGTTTAAAAATCTTAAGAATCAATTAG‑ATGTTAACCA  >  NC_004302/28822‑28950                                                        |                                                                            gtggtCTACTCCGTTTGATAATATCAATGTGGATGGTATTGTTGATCAATATAAAGAGATTTTTTTCACaaagtc                                                          <  1:183798/75‑5 (MQ=255)                                                        gaga‑TTTTTTCACAAGCAGATGTTCAATTTCAGAAATGGTTTAAAAATCTTAAGAATCAATTAGTATGtttcaaa  <  1:3036599/75‑6 (MQ=255)                                                        |                                                                            GTGGTCTACTCCGTTTGATAATATCAATGTGGATGGTATTGTTGATCAATATAAAGAGA‑TTTTTTCACAAGCAGATGTTCAATTTCAGAAATGGTTTAAAAATCTTAAGAATCAATTAG‑ATGTTAACCA  >  NC_004302/28822‑28950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑