Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	28778	28876	99	2 [1]	[1] 2	r1tp45	Structural protein

TTGCTAGAAATGATACAACATACGAATTAC‑AATTAGCAACAATTTCCGTAAAAACTAATGCCACCCAAATCACTGATGCGGATATCACAGATATGCGTAGTGATTTTACGGTA  >  NC_004302/28704‑28816                                                                           |                                        acatcccaaaTGATACAACATACGAATTACAAATTAGCAACAATTTCCGTAAAAACTAATGCCACCCAAATCACt                                         >  1:5570887/8‑75 (MQ=255)                                        acaaTTTCCGTAAAAACTAATGCCACCCAAATCACTGATGCGGATATCACAGATATGCGTAGTGATTTTACgact  <  1:5861073/75‑4 (MQ=255)                                                                           |                                        TTGCTAGAAATGATACAACATACGAATTAC‑AATTAGCAACAATTTCCGTAAAAACTAATGCCACCCAAATCACTGATGCGGATATCACAGATATGCGTAGTGATTTTACGGTA  >  NC_004302/28704‑28816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑