breseq  version 0.29.0  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation annotation gene description
RA NC_007790 249 A→G intergenic (–/‑31) – / → SAUSA300_RS14705 –/replication protein
RA NC_007790 258 G→A intergenic (–/‑22) – / → SAUSA300_RS14705 –/replication protein
RA NC_007790 277 G→T intergenic (–/‑3) – / → SAUSA300_RS14705 –/replication protein
RA NC_007790 298 G→T A7S (GCT→TCC)  SAUSA300_RS14705 → replication protein
RA NC_007790 300 T→C A7S (GCT→TCC)  SAUSA300_RS14705 → replication protein
RA NC_007790 316 A→G K13E (AAA→GAA)  SAUSA300_RS14705 → replication protein
RA NC_007790 321 2 bp→GT coding (42‑43/717 nt) SAUSA300_RS14705 → replication protein
RA NC_007790 327 G→A K16K (AAG→AAA)  SAUSA300_RS14705 → replication protein
RA NC_007790 336 A→G P19P (CCA→CCG)  SAUSA300_RS14705 → replication protein
RA NC_007790 339 2 bp→TT coding (60‑61/717 nt) SAUSA300_RS14705 → replication protein
RA NC_007790 342 A→T A21A (GCA→GCT)  SAUSA300_RS14705 → replication protein
RA NC_007790 355 T→C L26L (TTA→CTT)  SAUSA300_RS14705 → replication protein
RA NC_007790 357 A→T L26L (TTA→CTT)  SAUSA300_RS14705 → replication protein
RA NC_007790 361 C→T L28L (CTT→TTA)  SAUSA300_RS14705 → replication protein
RA NC_007790 363 T→A L28L (CTT→TTA)  SAUSA300_RS14705 → replication protein
RA NC_007790 368 C→T T30I (ACA→ATA)  SAUSA300_RS14705 → replication protein
RA NC_007790 370 2 bp→CG coding (91‑92/717 nt) SAUSA300_RS14705 → replication protein
RA NC_007790 717 C→A T146T (ACC→ACA)  SAUSA300_RS14705 → replication protein
RA NC_007790 729 G→C S150S (TCG→TCC)  SAUSA300_RS14705 → replication protein
RA NC_007790 744 T→C D155D (GAT→GAC)  SAUSA300_RS14705 → replication protein
RA NC_007790 759 T→C D160D (GAT→GAC)  SAUSA300_RS14705 → replication protein
RA NC_007790 781 G→T V168L (GTA→TTA)  SAUSA300_RS14705 → replication protein
RA NC_007790 790 T→C L171L (TTA→CTA)  SAUSA300_RS14705 → replication protein
RA NC_007790 837 G→A L186L (TTG→TTA)  SAUSA300_RS14705 → replication protein
RA NC_007790 844 C→G Q189E (CAA→GAA)  SAUSA300_RS14705 → replication protein
RA NC_007790 849 A→G K190K (AAA→AAG)  SAUSA300_RS14705 → replication protein
RA NC_007790 875 T→C V199A (GTC→GCC)  SAUSA300_RS14705 → replication protein
RA NC_007790 898 G→A A207T (GCA→ACA)  SAUSA300_RS14705 → replication protein
RA NC_007790 918 A→G T213T (ACA→ACG)  SAUSA300_RS14705 → replication protein
RA NC_007790 945 A→G S222S (TCA→TCG)  SAUSA300_RS14705 → replication protein
RA NC_007790 951 C→A T224T (ACC→ACA)  SAUSA300_RS14705 → replication protein
RA NC_007790 1,266 (T)5→4 intergenic (+270/‑313) SAUSA300_RS14705 → / → SAUSA300_RS14710 replication protein/membrane protein
RA NC_007790 1,276 C→T intergenic (+280/‑303) SAUSA300_RS14705 → / → SAUSA300_RS14710 replication protein/membrane protein
RA NC_007790 1,278 C→T intergenic (+282/‑301) SAUSA300_RS14705 → / → SAUSA300_RS14710 replication protein/membrane protein
RA NC_007790 1,280 C→T intergenic (+284/‑299) SAUSA300_RS14705 → / → SAUSA300_RS14710 replication protein/membrane protein
RA NC_007790 1,303 T→G intergenic (+307/‑276) SAUSA300_RS14705 → / → SAUSA300_RS14710 replication protein/membrane protein
RA NC_007790 1,451 T→G intergenic (+455/‑128) SAUSA300_RS14705 → / → SAUSA300_RS14710 replication protein/membrane protein
RA NC_007790 1,468 C→A intergenic (+472/‑111) SAUSA300_RS14705 → / → SAUSA300_RS14710 replication protein/membrane protein
RA NC_007790 1,478 2 bp→TA intergenic (+482/‑100) SAUSA300_RS14705 → / → SAUSA300_RS14710 replication protein/membrane protein
RA NC_007790 1,502 C→T intergenic (+506/‑77) SAUSA300_RS14705 → / → SAUSA300_RS14710 replication protein/membrane protein
RA NC_007790 1,510 C→T intergenic (+514/‑69) SAUSA300_RS14705 → / → SAUSA300_RS14710 replication protein/membrane protein
RA NC_007790 1,572 G→C intergenic (+576/‑7) SAUSA300_RS14705 → / → SAUSA300_RS14710 replication protein/membrane protein
RA NC_007790 1,588 A→G N4D (AAC→GAC)  SAUSA300_RS14710 → membrane protein
RA NC_007790 1,603 G→A E9K (GAA→AAA)  SAUSA300_RS14710 → membrane protein
RA NC_007790 1,671 G→T L31F (TTG→TTT)  SAUSA300_RS14710 → membrane protein
RA NC_007790 1,694 C→T P39L (CCG→CTG)  SAUSA300_RS14710 → membrane protein
RA NC_007790 1,744 A→T M56L (ATG→TTG)  SAUSA300_RS14710 → membrane protein
RA NC_007790 1,778 G→A intergenic (+11/+315) SAUSA300_RS14710 → / ← SAUSA300_RS14715 membrane protein/hypothetical protein
RA NC_007790 1,871 C→A intergenic (+104/+222) SAUSA300_RS14710 → / ← SAUSA300_RS14715 membrane protein/hypothetical protein
RA NC_007790 1,954 2 bp→TGC intergenic (+187/+138) SAUSA300_RS14710 → / ← SAUSA300_RS14715 membrane protein/hypothetical protein
RA NC_007790 1,967 C→G intergenic (+200/+126) SAUSA300_RS14710 → / ← SAUSA300_RS14715 membrane protein/hypothetical protein
MC NC_007791 1 Δ4,439 bp SAUSA300_RS14725–SAUSA300_RS14735 SAUSA300_RS14725, SAUSA300_RS14730, SAUSA300_RS14735
MC NC_007792 1 Δ37,136 bp SAUSA300_RS14740–SAUSA300_RS14925 38 genes
MC NC_007793 1 Δ2,872,769 bp ssrA–SAUSA300_RS14700 2937 genes

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_007790 101 241 141 13 [9] [0] 24 –/SAUSA300_RS14705 –/replication protein
* * ÷ NC_007790 378 704 327 36 [4] [11] 13 SAUSA300_RS14705 replication protein
* * ÷ NC_007790 983 1253 271 12 [8] [7] 13 [SAUSA300_RS14705] [SAUSA300_RS14705]
* * ÷ NC_007790 1983 3125 1143 14 [10] [0] NA SAUSA300_RS14715 SAUSA300_RS14715