Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007790	378	704	327	36 [4]	[11] 13	SAUSA300_RS14705	replication protein

AAGAGCATTACAAGTTGACTATCGACCTGTTGCTAATGTTAAAGCGATCAAACCGAATAGAAAAGGCGATAAAGACATTGAATCGGCAATCAAAGAGACCTCAAAATATTCGGTTAAATCATCTGATTTTTTAACTGATGATGATGAAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGT  >  NC_007790/618‑805                                                                                        |                                                                                                     gcaagCATTAAAAGTAAATTATCGACCTGTCGTAAATATTAAAGCGATCAAACC‑‑‑‑A‑AAAAGGAGATAAAGATATTGCGTCTGCTATCAAGGAGACATCaaa                                                                                     >  1:3632583/4‑100 (MQ=255)          aaaagtaaattATCGACCTGTCGTAAATATTAAAGCGATCAAACC‑‑‑‑A‑AAAAGGAGATAAAGATATTGCGTCTGCTATCAAGGAGACATCAAAATATTCCGt                                                                            >  1:3180128/11‑100 (MQ=255)                                                                         aGATATTGCGTCTGCTATCAAGGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATAGCGATGAAAAAAATCAAGAAATTATCAGTGAt                  <  1:2343521/100‑1 (MQ=255)                                                                             gattttataacAATCAAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACGAAAAAAATCAAGAAATTTTAAGTGATCTAg              >  1:3523420/11‑100 (MQ=255)                                                                             gattttataacAATCAAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACGAAAAAAATCAAGAAATTTTAAGTGATCTAg              <  1:3770622/90‑1 (MQ=255)                                                                                   ataacAATCAAAGAGACATCAAAATATTCCGTTAAATCATCTGACCTTTTAACTGATGACGACGAAAAAAATCAAGAAATTTTAAGTGATCTAGaaaagg        >  1:5050157/5‑98 (MQ=255)                                                                                   ataacAATCAAAGAGACATCAAAATATTCCGTTAAATCATCTGACCTTTTAACTGATGACGACGAAAAAAATCAAGAAATTTTAAGTGATCTAGaaaagg        >  1:70271/5‑98 (MQ=255)                                                                                    cGGCAATCAAAGAGACCTCAAAATATTCGGTTAAATCATCTGATTTTTTAACTGATGATAATGAAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAgg       >  1:2591394/1‑100 (MQ=255)                                                                                     aacAATCAAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACGAAAAAAATCAAGAAATTTTAAGTGATCTAGaaaaggtt      >  1:4474383/3‑96 (MQ=255)                                                                                     aacAATCAAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACGAAAAAAATCAAGAAATTTTAAGTGATCTAGaaaaggtc      >  1:3998324/3‑96 (MQ=255)                                                                                      acAATCAAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACGAAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGttt    <  1:1007062/99‑1 (MQ=255)                                                                                        aaTCAAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACGAAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGt  <  1:3111065/100‑1 (MQ=255)                                                                                        aaTCAAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACGAAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGt  <  1:80129/100‑1 (MQ=255)                                                                                        |                                                                                                     AAGAGCATTACAAGTTGACTATCGACCTGTTGCTAATGTTAAAGCGATCAAACCGAATAGAAAAGGCGATAAAGACATTGAATCGGCAATCAAAGAGACCTCAAAATATTCGGTTAAATCATCTGATTTTTTAACTGATGATGATGAAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGT  >  NC_007790/618‑805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑