| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007790 | 1,572 | G→C | intergenic (+576/‑7) | SAUSA300_RS14705 → / → SAUSA300_RS14710 | replication protein/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007790 | 1,572 | 0 | G | C | 87.5% | 14.4 / ‑2.6 | 8 | intergenic (+576/‑7) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base C (5/2); total (5/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.09e-01 | |||||||||||
CCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTT‑AAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTACTTGGA > NC_007790/1499‑1650 | cccccTTAAAATTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTT‑AAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGtt < 1:1361915/100‑1 (MQ=255)cccccTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTT‑AAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGtt < 1:2603264/100‑1 (MQ=255) ccccTTAAAATTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGtt < 1:2321733/100‑1 (MQ=255) aGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTT‑AAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGc > 1:337650/1‑100 (MQ=255) agaaGTCTTGTGATAAAGTTTTTT‑AAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGttt > 1:591011/3‑100 (MQ=255) tgtgATAAAGTTTTTT‑AAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTa > 1:1928985/1‑100 (MQ=255) tgtgATAAAGTTTTTT‑AAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTa > 1:3991439/1‑100 (MQ=255) aaaGTTTTTT‑AAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTACTTGGa > 1:2982867/1‑100 (MQ=255) | CCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTT‑AAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTACTTGGA > NC_007790/1499‑1650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |