Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007790 951 C→A T224T (ACC→ACA)  SAUSA300_RS14705 → replication protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077909510CA100.0% 297.0 / NA 110T224T (ACC→ACA) SAUSA300_RS14705replication protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (108/2);  total (108/2)

Only 100 of 110 total aligned reads displayed.

AAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGA  >  NC_007790/854‑1002
                                                                                                 |                                                   
aaaTTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGACGAAGATAAAACAACAGACGAAGAGGAAAAAGCACATTCAATTACAGc                                                   <  1:4782792/100‑1 (MQ=255)
 ccttttAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCa                                                  >  1:931462/3‑100 (MQ=255)
    tgtAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCaaga                                               >  1:113435/3‑98 (MQ=255)
       aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                            >  1:3878897/1‑100 (MQ=255)
       aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                            >  1:3112489/1‑100 (MQ=255)
       aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                            <  1:4096352/100‑1 (MQ=255)
       aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                            >  1:4054075/1‑100 (MQ=255)
       aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTAgg                                            >  1:2194246/1‑100 (MQ=255)
       aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATATgg                                            >  1:1933850/1‑100 (MQ=255)
       aaaCCTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCaaagatc                                            >  1:1016498/1‑95 (MQ=255)
            tagataaTGTTGAAGATGGTAATTTAATTAATACAAGTGACGAAGATAAAACAACAGACGAAGAGGAAAAAGCACATTCAATTACAGCAATCTGGaaaga                                       >  1:926568/7‑97 (MQ=255)
            tAGACNATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAAttt                                       >  1:1290492/1‑100 (MQ=255)
            tAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCaagatcggaaga                                       >  1:3381636/1‑90 (MQ=255)
            tAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAAttt                                       >  1:4582547/1‑100 (MQ=255)
            tAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAAttt                                       >  1:1190852/1‑100 (MQ=255)
            tAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAAttt                                       >  1:3488724/1‑100 (MQ=255)
             cgACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                      >  1:4269807/2‑100 (MQ=255)
             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGGCAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                      >  1:3075960/1‑100 (MQ=255)
             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                      >  1:3502045/1‑100 (MQ=255)
             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                      >  1:414955/1‑100 (MQ=255)
             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                      >  1:3184108/1‑100 (MQ=255)
             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                      >  1:474460/1‑100 (MQ=255)
             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                      >  1:505508/1‑100 (MQ=255)
             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTgggagatc                                      >  1:3912352/1‑94 (MQ=255)
             aGACGATGCCGAAGATGGCAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGaaagat                                      >  1:1647712/1‑96 (MQ=255)
               aCGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGGCGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAAtaagat                                    >  1:2391716/1‑95 (MQ=255)
               aCGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTCGGagagatcg                                    >  1:5224368/1‑93 (MQ=255)
               aCGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTAGGAAtagatc                                    >  1:3849257/1‑95 (MQ=255)
               aCGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATGTGGaagatcgg                                    >  1:4643995/1‑94 (MQ=255)
                tgATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGaaagatcgg                                   >  1:3187708/2‑93 (MQ=255)
                tgATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                   >  1:4126783/2‑100 (MQ=255)
                tgATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                   >  1:3567782/2‑100 (MQ=255)
                tgATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                   >  1:1829784/2‑100 (MQ=255)
                tgATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                   >  1:4947558/2‑100 (MQ=255)
                tgATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTCGGaagatcgga                                   >  1:615312/2‑93 (MQ=255)
                ccaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATCTGGaagatcgga                                   >  1:1615269/3‑93 (MQ=255)
                cGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                   >  1:3521097/1‑100 (MQ=255)
                cGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                   >  1:58136/1‑100 (MQ=255)
                cGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                   >  1:4494282/1‑100 (MQ=255)
                cGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                   >  1:2313216/1‑100 (MQ=255)
                cGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGACTACAGCAATTTGGAATTTCGaa                                   >  1:1626372/1‑100 (MQ=255)
                atgtgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                   >  1:2237956/7‑100 (MQ=255)
                 naTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                  >  1:3431217/2‑100 (MQ=255)
                 gcggccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                  >  1:4639889/6‑100 (MQ=255)
                 gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGaaagatcgga                                  >  1:1384277/1‑92 (MQ=255)
                 gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                  >  1:1127035/1‑100 (MQ=255)
                 gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                  >  1:3513393/1‑100 (MQ=255)
                 gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                  >  1:3855388/1‑100 (MQ=255)
                 gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                  >  1:879901/1‑100 (MQ=255)
                 gATGCCGAAAATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGaagatcggaa                                  >  1:179832/1‑92 (MQ=255)
                 caTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                  >  1:537447/2‑100 (MQ=255)
                 caTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                  >  1:877606/2‑100 (MQ=255)
                 actgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                  >  1:856309/6‑100 (MQ=255)
                 aaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTGGaagatcggaa                                  >  1:3821780/2‑92 (MQ=255)
                  ttgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                 >  1:3999501/5‑100 (MQ=255)
                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCGCATTCGATTACAGCAATTAGGaagatcggaag                                 >  1:4503372/1‑91 (MQ=255)
                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                 >  1:471166/1‑100 (MQ=255)
                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                 >  1:1197030/1‑100 (MQ=255)
                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                 >  1:934506/1‑100 (MQ=255)
                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                 >  1:3185821/1‑100 (MQ=255)
                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                 >  1:2418898/1‑100 (MQ=255)
                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                 >  1:1939330/1‑100 (MQ=255)
                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAAGTTGGaagatcggaag                                 >  1:2531838/1‑91 (MQ=255)
                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTGGaagatcggaag                                 >  1:3766346/1‑91 (MQ=255)
                   tgccGAAGGTGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                                >  1:1557283/4‑100 (MQ=255)
                   tgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                                >  1:1165464/4‑100 (MQ=255)
                   tgccGAAGATGGAAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                                >  1:776867/4‑100 (MQ=255)
                   ggccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                                >  1:4319591/4‑100 (MQ=255)
                   ggccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                                >  1:1193578/4‑100 (MQ=255)
                   ggccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                                >  1:4923637/4‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:3806033/3‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:3222183/3‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:4823046/3‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:779409/3‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:576244/3‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:3465256/3‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:2979119/3‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:4436497/3‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:2231337/3‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:356874/3‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:3639706/3‑100 (MQ=255)
                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                               >  1:3668742/3‑100 (MQ=255)
                         ccaTGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAat                          >  1:1333145/3‑100 (MQ=255)
                         acaTGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGGAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAat                          >  1:1533087/3‑100 (MQ=255)
                          actGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAatt                         >  1:496171/3‑100 (MQ=255)
                           ttGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAatta                        >  1:4682473/2‑100 (MQ=255)
                           aTGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAGGCAAAatta                        >  1:1370015/1‑100 (MQ=255)
                            tGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattat                       >  1:829016/1‑100 (MQ=255)
                            tGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattat                       >  1:1964286/1‑100 (MQ=255)
                            aggTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattat                       >  1:3608802/2‑100 (MQ=255)
                             ggTAATTTGATTAATACAAGTGATGAAGATAAAACGACATACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt                      >  1:1220072/1‑100 (MQ=255)
                             ggTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt                      >  1:1327673/1‑100 (MQ=255)
                             ggTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt                      >  1:1065191/1‑100 (MQ=255)
                                     gATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTaaaa              >  1:2262278/1‑98 (MQ=255)
                                        tAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTaaaaaat           >  1:2617490/1‑95 (MQ=255)
                                         aaTACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTaaaaaatg          >  1:48856/1‑94 (MQ=255)
                                          atacAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAAAAAttg         >  1:3332414/4‑99 (MQ=255)
                                            acAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAAAAAtttaa       >  1:4788123/2‑97 (MQ=255)
                                             taaGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAAAAAtttaag      >  1:5254427/2‑96 (MQ=255)
                                                 tgatgaAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAAAAAtttaaggagt  >  1:4715017/1‑92 (MQ=255)
                                                                                                 |                                                   
AAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGA  >  NC_007790/854‑1002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑