| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007790 | 1,510 | C→T | intergenic (+514/‑69) | SAUSA300_RS14705 → / → SAUSA300_RS14710 | replication protein/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007790 | 1,510 | 0 | C | T | 91.7% | 22.2 / ‑4.6 | 12 | intergenic (+514/‑69) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (8/3); total (8/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01 | |||||||||||
TTATTTGGCTCATATTTGCGTTTTAAGAGCTTGTATATATTTTTAAGTTAAAAACCTATATGA‑TA‑C‑CCC‑CTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTT‑AAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTT > NC_007790/1414‑1598 | ttatttGGCTCATATTTGCGTTTTAAGAGCTTGTATAGATTTTTAAG‑TAGAAAACTATAAGA‑TTTA‑CCT‑CTAAATCTTTAAAATACCCTCTTAAAATTCa > 1:203965/1‑100 (MQ=255) ccttGGCTCATATTTGCGTTTTAAGAGCTTGTATAGATTTTTAAG‑TAGAAAACTATAAGATTT‑A‑CCT‑CTAAATCTTTAAAATACCCTCTTAAAATTCaaa > 1:5032882/3‑100 (MQ=255) atttGGCTCATATTTTCGTTTTAAAAGC‑‑GTATATAAGTTTTGGATGGAAAAATATATGATTT‑A‑CCC‑CTAAACCTTTAAAAT‑GCCCCTTAAAATTCAAAAt > 1:4067522/1‑100 (MQ=255) atttGGCTCATATTTGCGTTTTAAGAGCTTGTATAGATTTTTAAG‑TAGAAAACTATAAGATTT‑A‑CCT‑CTAAATCTTTAAAATACCCTCTTAAAATTCaaa > 1:4120700/1‑100 (MQ=255) cttGGCTCATATTTGCGTTTTAAGAGCTTGTATAGATTTTTAAG‑TAGAAAACTATAAGATTT‑A‑CCT‑CTAAATCTTTAAAATACCCTCTTAAAATTCaaaa > 1:2503208/2‑100 (MQ=255) tGGCTCATATTTGCGTTTTAAGAGCTTGTATAGATTTTTAAGTAGAAAA‑CTATAAGA‑TT‑TACCT‑CTAAATCTTTAAAATACCCTCTTAAAATTCAAAATa > 1:1831520/1‑100 (MQ=255) tGGCTCATATTTGCGTTTTAAGAGCTTGTATAGATTTTTAAG‑TAGAAAACTATAAGATTT‑A‑CCT‑CTAAATCTTTAAAATACCCTGTTAAAATTCGAAATa > 1:2193689/1‑100 (MQ=255) ggCTCATATTTGCGTTTTAAGAGCTTGTATAGATTTTTAAGT‑‑AGAA‑CTATAAGATTT‑A‑CCT‑CTAAATCTTTAAAATACCCTCTTAAAATTCAAAATAAAg > 1:3071619/1‑100 (MQ=255) tcttagCGTTTTAAGAGCTTGTATAGATTTTTAAG‑TAGAAAACTATAAGA‑TT‑T‑ACCTCTAAATCTTTAAAATACCCTCTTAAAATTCAAAATAAAGGtgt < 1:4539785/95‑3 (MQ=255) cccccTTAAAATTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTT‑AAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGtt < 1:1361915/100‑1 (MQ=255) cccccTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTT‑AAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGtt < 1:2603264/100‑1 (MQ=255) ccccTTAAAATTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGtt < 1:2321733/100‑1 (MQ=255) | TTATTTGGCTCATATTTGCGTTTTAAGAGCTTGTATATATTTTTAAGTTAAAAACCTATATGA‑TA‑C‑CCC‑CTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTT‑AAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTT > NC_007790/1414‑1598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |