D22 :: BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007790	898	G→A	A207T (GCA→ACA)	SAUSA300_RS14705 →	replication protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007790	898	0	G	A	100.0%	750.9 / NA	249	A207T (GCA→ACA)	SAUSA300_RS14705	replication protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (234/15); total (234/15)

Only 100 of 250 total aligned reads displayed.

TTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTGCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGAT‑GAAGATAAAAC‑AACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGA  >  NC_007790/801‑990

 ttGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACag                                                                                             <  1:596133/100‑2 (MQ=37)

  tGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAg                                                                                            >  1:4792768/1‑100 (MQ=37)

   gTATCGAAAACGTATGTTAAGTTATGGTAGATTGCTTAAACAAAAGCATAAAATTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGt                                                                                           >  1:1143427/1‑100 (MQ=25)

      ccGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGtgat                                                                                        >  1:5031323/2‑100 (MQ=37)

       ngAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGtgat‑g                                                                                      >  1:2563510/2‑100 (MQ=37)

       cGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGtgat‑g                                                                                      >  1:3275277/1‑100 (MQ=37)

       cGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGACGGTAATTTGATTAATACAAGtgat‑g                                                                                      <  1:1709081/100‑1 (MQ=37)

        acccccGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGtgat‑ga                                                                                     >  1:2796479/6‑100 (MQ=255)

           accGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGa                                                                                  >  1:485892/3‑100 (MQ=255)

            aCGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGAt                                                                                 >  1:3386326/1‑100 (MQ=38)

             cGTATGTTAAGTTATGGTAGATTGCTTAAACAAAAGCATAAAATTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGAC‑GAAGATa                                                                                >  1:4465781/1‑100 (MQ=25)

             cGTATGTTAAGTTATGGTAGATTGCTTAAACAAAAGCATAAAATTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGAC‑GAAGATa                                                                                >  1:2167662/1‑100 (MQ=255)

              gTATGTTATGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATaa                                                                               >  1:2235586/1‑100 (MQ=255)

              atATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGGAAGAtc                                                                                >  1:3715227/2‑99 (MQ=255)

                gctgtgtgctATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATaaaa                                                                             >  1:2395537/10‑100 (MQ=255)

                aTGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATaaaa                                                                             >  1:2739604/1‑100 (MQ=255)

                  gTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAaacg                                                                           >  1:308795/1‑99 (MQ=255)

                    tAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATaaaatcga                                                                         >  1:5157603/1‑96 (MQ=255)

                    tAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAgac‑gac                                                                        <  1:949061/100‑1 (MQ=255)

                       gTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAaacgagcag                                                                      <  1:937910/100‑7 (MQ=255)

                        ctATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAATAC‑GACAGat                                                                    >  1:4542097/2‑99 (MQ=255)

                         tctggtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAATAC‑GACAGatc                                                                   >  1:4351662/3‑98 (MQ=255)

                         tATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTCATTTGATTAATACAAGTGAT‑GAAGATAAGAC‑GACAGatc                                                                   >  1:4204706/1‑98 (MQ=255)

                         tATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAaac‑aagcagat                                                                   >  1:3137634/1‑94 (MQ=255)

                         tATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAGAT‑GACAGatc                                                                   >  1:1268927/1‑98 (MQ=255)

                         tATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAACAC‑GACAGatc                                                                   >  1:1828131/1‑98 (MQ=255)

                         tATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAGC‑AACAGatc                                                                   >  1:267243/1‑98 (MQ=255)

                         cttggtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAaac‑acagatcg                                                                   >  1:530341/3‑93 (MQ=255)

                          gtggtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAac‑gacaagatc                                                                  >  1:4732522/2‑95 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGGTGGTAATTTGATTAATACAAGTGAT‑GAAGATAAaac‑gaccaaatc                                                                  >  1:4834399/1‑94 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAaac‑gaccagatc                                                                  >  1:509112/1‑94 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAac‑gacaagaga                                                                  >  1:2886136/1‑95 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAGC‑GACAGatcg                                                                  >  1:3553086/1‑97 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAACGAACAGatc                                                                   >  1:1874474/1‑98 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAgccca                                                                  >  1:3295375/1‑96 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGatcg                                                                  >  1:814429/1‑97 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACga                                                                  >  1:573722/1‑100 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACga                                                                  >  1:4313446/1‑100 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑AACAGatcg                                                                  >  1:3471113/1‑97 (MQ=255)

                           tggtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGatcgg                                                                 >  1:4248687/1‑96 (MQ=255)

                           tggtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACgaa                                                                 >  1:198881/1‑100 (MQ=255)

                            ggtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGatcgga                                                                >  1:4367955/1‑95 (MQ=255)

                            ggtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACgaaa                                                                >  1:2851411/1‑99 (MQ=255)

                            gctggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAaac‑gactagatcgg                                                                >  1:4953447/3‑92 (MQ=255)

                            cgtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGatcgga                                                                >  1:2331043/2‑95 (MQ=255)

                            agtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAac‑gacacagaaga                                                                >  1:364125/2‑93 (MQ=255)

                              acgATTGCTTAAACAAAAGCATAAAATTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGAC‑GAAGATAAAAC‑AACAGACgaagat                                                              >  1:2957162/3‑99 (MQ=255)

                               ggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAGGC‑GACAGatcggaaga                                                             >  1:5191940/1‑92 (MQ=255)

                               ggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGatcggaaga                                                             >  1:150351/1‑92 (MQ=255)

                                gATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACATATgaagatcg                                                            >  1:3824130/1‑97 (MQ=255)

                                 aTTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGatcggaagagc                                                           >  1:2902291/1‑90 (MQ=255)

                                               agcATAAAATTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGAC‑GAAGATAAAAC‑AACAGACGAAGAGGAAAAAGCACATTCAAt                                             >  1:2622231/3‑100 (MQ=255)

                                                  aTAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTAc                                          <  1:3816586/100‑1 (MQ=255)

                                                     aaaTTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGAC‑GAAGATAAAAC‑AACAGACGAAGAGGAAAAAGCACATTCAATTACAGc                                       <  1:4782792/100‑1 (MQ=255)

                                                            aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                >  1:3112489/1‑100 (MQ=255)

                                                            aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                <  1:4096352/100‑1 (MQ=255)

                                                            aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                >  1:4054075/1‑100 (MQ=255)

                                                            aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                >  1:3878897/1‑100 (MQ=255)

                                                            aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTAgg                                >  1:2194246/1‑100 (MQ=255)

                                                            aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATATgg                                >  1:1933850/1‑100 (MQ=255)

                                                            aaaCCTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCaaagatc                                >  1:1016498/1‑95 (MQ=255)

                                                                 tagataaTGTTGAAGATGGTAATTTAATTAATACAAGTGAC‑GAAGATAAAAC‑AACAGACGAAGAGGAAAAAGCACATTCAATTACAGCAATCTGGaaaga                           >  1:926568/7‑97 (MQ=255)

                                                                 tAGACNATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAAttt                           >  1:1290492/1‑100 (MQ=255)

                                                                  cgACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                          >  1:4269807/2‑100 (MQ=255)

                                                                  aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                          >  1:3502045/1‑100 (MQ=255)

                                                                  aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTgggagatc                          >  1:3912352/1‑94 (MQ=255)

                                                                  aGACGATGCCGAAGATGGCAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGaaagat                          >  1:1647712/1‑96 (MQ=255)

                                                                     tgATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                       >  1:4126783/2‑100 (MQ=255)

                                                                     tgATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTCGGaagatcgga                       >  1:615312/2‑93 (MQ=255)

                                                                     cGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                       >  1:4494282/1‑100 (MQ=255)

                                                                     cGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                       >  1:2313216/1‑100 (MQ=255)

                                                                     cGATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGACTACAGCAATTTGGAATTTCGaa                       >  1:1626372/1‑100 (MQ=255)

                                                                      naTGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                      >  1:3431217/2‑100 (MQ=255)

                                                                      gcggccGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                      >  1:4639889/6‑100 (MQ=255)

                                                                      gATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGaaagatcgga                      >  1:1384277/1‑92 (MQ=255)

                                                                      gATGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                      >  1:879901/1‑100 (MQ=255)

                                                                      gATGCCGAAAATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGaagatcggaa                      >  1:179832/1‑92 (MQ=255)

                                                                      actgccGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                      >  1:856309/6‑100 (MQ=255)

                                                                       ttgccGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                     >  1:3999501/5‑100 (MQ=255)

                                                                       cctccGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                     >  1:323055/5‑100 (MQ=255)

                                                                       aTGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                     >  1:3185821/1‑100 (MQ=255)

                                                                       aTGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                     >  1:1197030/1‑100 (MQ=255)

                                                                       aTGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAAGTTGGaagatcggaag                     >  1:2531838/1‑91 (MQ=255)

                                                                       aTGCCGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTGGaagatcggaag                     >  1:3766346/1‑91 (MQ=255)

                                                                        tgccGAAGGTGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                    >  1:1557283/4‑100 (MQ=255)

                                                                        tgccGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                    >  1:1165464/4‑100 (MQ=255)

                                                                        tgccGAAGATGGAAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                    >  1:776867/4‑100 (MQ=255)

                                                                        ggccGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                    >  1:4923637/4‑100 (MQ=255)

                                                                         gccGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                   >  1:3222183/3‑100 (MQ=255)

                                                                         gccGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                   >  1:2979119/3‑100 (MQ=255)

                                                                         gccGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                   >  1:779409/3‑100 (MQ=255)

                                                                         gccGAAGATGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                   >  1:356874/3‑100 (MQ=255)

                                                                              ccaTGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAat              >  1:1333145/3‑100 (MQ=255)

                                                                                ttGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAatta            >  1:4682473/2‑100 (MQ=255)

                                                                                 tGGTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattat           >  1:1964286/1‑100 (MQ=255)

                                                                                 aggTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattat           >  1:3608802/2‑100 (MQ=255)

                                                                                  ggTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACATACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt          >  1:1220072/1‑100 (MQ=255)

                                                                                  ggTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt          >  1:1823001/1‑100 (MQ=255)

                                                                                  ggTAATTTGATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt          >  1:1065191/1‑100 (MQ=255)

                                                                                          gATTAATACAAGTGAT‑GAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTaaaa  >  1:2262278/1‑98 (MQ=255)

TTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTGCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGAT‑GAAGATAAAAC‑AACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGA  >  NC_007790/801‑990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`