mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007790 | 1,476 | 1 | . | T | 79.0% | 43.7 / 7.0 | 19 | intergenic (+480/‑103) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,301 | 1 | . | G | 78.6% | 52.7 / 17.8 | 28 | intergenic (+305/‑278) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 762 | 0 | T | C | 76.3% | 208.8 / 69.8 | 152 | D161D (GAT→GAC) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 1,474 | 0 | T | A | 76.0% | 39.8 / 11.6 | 25 | intergenic (+478/‑105) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 794 | 0 | A | . | 75.6% | 463.8 / 309.6 | 325 | coding (515/717 nt) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 1,330 | 0 | T | C | 74.1% | 31.4 / 10.0 | 27 | intergenic (+334/‑249) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,488 | 0 | C | T | 68.4% | 16.6 / 6.4 | 19 | intergenic (+492/‑91) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 711 | 0 | A | G | 64.5% | 17.2 / 19.8 | 31 | K144K (AAA→AAG) | SAUSA300_RS14705 | replication protein |
| * | NC_007790 | 1,482 | 0 | C | T | 63.2% | 11.0 / 9.7 | 19 | intergenic (+486/‑97) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,373 | 0 | C | T | 52.5% | 3.4 / 37.5 | 41 | intergenic (+377/‑206) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,461 | 0 | T | . | 51.6% | 21.6 / 68.3 | 37 | intergenic (+465/‑118) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,366 | 0 | T | A | 50.0% | ‑3.8 / 33.5 | 36 | intergenic (+370/‑213) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,464 | 0 | A | G | 47.2% | ‑1.0 / 34.1 | 36 | intergenic (+468/‑115) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,463 | 0 | A | G | 40.0% | 18.6 / 25.8 | 36 | intergenic (+467/‑116) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,462 | 0 | T | A | 38.9% | 31.7 / 31.1 | 37 | intergenic (+466/‑117) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,357 | 1 | . | T | 36.1% | 20.7 / 50.9 | 36 | intergenic (+361/‑222) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,414 | 0 | T | G | 30.9% | 69.8 / 49.0 | 55 | intergenic (+418/‑165) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,406 | 0 | C | G | 29.6% | 87.3 / 43.2 | 54 | intergenic (+410/‑173) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,361 | 0 | A | C | 27.8% | 50.2 / 25.3 | 36 | intergenic (+365/‑218) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| * | NC_007790 | 1,469 | 0 | C | A | 24.0% | 48.9 / 11.8 | 25 | intergenic (+473/‑110) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |