| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Xen36_12 | 131 | 0 | A | T | 70.8% | 827.9 / inf | 636 | intergenic (–/+490) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| Reads supporting (aligned to +/- strand): ref base A (91/94); new base T (240/208); total (333/303) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.30e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 640 total aligned reads displayed.
‑‑‑‑‑CCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCACAAGACAAGAAAGGTT > Xen36_12/1‑280 | ccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAaagaaaaaac < 1:3496037‑M1/137‑4 (MQ=255)agcgattgtcacaagacaagaaaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCACAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAAt > 1:323055‑M1/47‑150 (MQ=255) gctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTNTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATg > 1:3554690‑M2/84‑150 (MQ=255) gCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCt < 1:2489473‑M1/149‑1 (MQ=255) gAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAAAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCtcgg > 1:894356/1‑147 (MQ=21) tcacaagacaagaaaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGc > 1:720610‑M1/39‑150 (MQ=255) agcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGc < 1:3621599‑M2/74‑1 (MQ=255) aaCACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGc < 1:581405/150‑1 (MQ=21) caGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAg > 1:2150949/1‑150 (MQ=25) ttAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGTTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGaaaa < 1:928728/150‑1 (MQ=25) tAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAAc > 1:2236219/1‑150 (MQ=25) gtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGt > 1:1319344‑M2/64‑150 (MQ=255) aaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGCGAAGTGAAAACGt > 1:1571629‑M1/26‑150 (MQ=255) gccaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGtt > 1:2906012‑M2/63‑150 (MQ=255) caacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTg < 1:491949‑M2/90‑1 (MQ=255) aacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGa < 1:1679011‑M2/91‑1 (MQ=255) tcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGaa > 1:2663959‑M1/21‑150 (MQ=255) acttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGaa < 1:6720‑M2/92‑1 (MQ=255) tacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCt < 1:3061877‑M2/95‑1 (MQ=255) tacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCt > 1:2097468‑M2/56‑150 (MQ=255) cGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTCTGTCTAAAATGTCAAAGTAAAAAAGGAACCACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCt > 1:1489497/1‑150 (MQ=255) gttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGAc < 1:823919‑M2/98‑1 (MQ=255) cgacgatggtagccAACTTACGTTCCGCTAGAGTAAAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGAc > 1:2805786‑M1/15‑150 (MQ=255) cGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGt > 1:3460322/1‑131 (MQ=255) cgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGaaa > 1:1001251‑M2/49‑150 (MQ=255) gctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGATACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAAc < 1:1133989‑M2/103‑1 (MQ=255) gTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAAc < 1:1838596/150‑1 (MQ=255) gTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACga > 1:534107/1‑150 (MQ=38) tCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACgaga < 1:1981014/150‑1 (MQ=255) gtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTg < 1:1801634‑M2/72‑1 (MQ=255) cGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGACATGAAAACGTTTGAATCTGACGAAACGAGaa > 1:389195/1‑150 (MQ=255) gaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAaga > 1:3759944‑M2/39‑150 (MQ=255) aaCTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGaaaa < 1:1275104/150‑1 (MQ=255) aCTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCACAGTGAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGaaaagagaaaagag > 1:3408446/1‑150 (MQ=38) tACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGa < 1:865055/115‑1 (MQ=38) cGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAgcgc > 1:3366451/1‑150 (MQ=255) cGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCaa > 1:3683678/1‑150 (MQ=255) gccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAAc > 1:1429927‑M2/32‑150 (MQ=255) gTTCCGCGAGAGGAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGaaa < 1:3326857/140‑1 (MQ=255) ggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGt < 1:2567679‑M2/123‑1 (MQ=255) cGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGt > 1:3213938/1‑150 (MQ=39) cTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTCAAAA‑‑TTAACAAAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAGAAGAGCGCAACGAGttt > 1:1036159/1‑150 (MQ=255) aagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGAc > 1:429115‑M2/25‑122 (MQ=255) aagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTta > 1:2255735‑M2/25‑150 (MQ=255) agagTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtag < 1:3027270/150‑1 (MQ=39) agagTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑CTAACCCAAAGAAAAATGGCTCGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAAAGAGTTtag > 1:1952429/1‑150 (MQ=38) agaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTtag > 1:3639699‑M2/24‑150 (MQ=255) gTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtagt > 1:1059441/1‑150 (MQ=255) aatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtagtag < 1:2401540‑M2/130‑1 (MQ=255) aGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATGTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTagag < 1:651395/150‑1 (MQ=38) aGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTagag > 1:1360708/1‑150 (MQ=38) gatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCt > 1:297299‑M2/17‑150 (MQ=255) gcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATATCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAACCGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTaaa > 1:961972‑M2/14‑150 (MQ=255) ttGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTaa < 1:78563/150‑1 (MQ=255) ttGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAAAGCGCAACGAGTTtagccgaactaaat > 1:1875436/1‑139 (MQ=255) ttGCCAGGCAAGTCGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAAAGCGCAACGATTTTAGTCGAGCTAAAt > 1:176607/1‑150 (MQ=37) cgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAAt < 1:1446161‑M2/138‑1 (MQ=255) cgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAAt > 1:2194407‑M2/13‑150 (MQ=255) cgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAAt > 1:1723447‑M2/13‑150 (MQ=255) tGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATg < 1:3652310/150‑1 (MQ=37) tGCCAGGCAAGTTGAGACCGCAAGGCCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACGAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATg < 1:1214310/150‑1 (MQ=37) gatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATg < 1:1662631‑M2/139‑1 (MQ=255) gatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATg < 1:2300906‑M2/139‑1 (MQ=255) gCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAATACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGa > 1:2722108/1‑150 (MQ=37) tgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAg < 1:3306944‑M2/141‑1 (MQ=255) tgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAg < 1:3255598‑M2/141‑1 (MQ=255) cAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGa > 1:3345958/1‑150 (MQ=255) cgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGGGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGt < 1:114919‑M2/146‑1 (MQ=255) cgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAagc > 1:1239854‑M2/5‑149 (MQ=255) gTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtagtag > 1:3277882/1‑131 (MQ=37) attGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTgag < 1:1933668/149‑1 (MQ=25) tGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGagag > 1:628270/1‑150 (MQ=25) tGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTAagag > 1:1862245/1‑150 (MQ=25) agaCCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGcc < 1:3604914/150‑1 (MQ=25) agaCCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAATGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGttt < 1:2475353/122‑1 (MQ=37) gaCCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCg > 1:3163968/1‑150 (MQ=25) gaCCGCAAGGTCTCCTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCg > 1:2631554/1‑150 (MQ=21) ccGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCaa < 1:642278/112‑1 (MQ=38) ccGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCgaa < 1:2167282/150‑1 (MQ=25) gCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACATTTGAATCTGACGAAACGAGAGAAGTGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCgaaga > 1:1905714/1‑150 (MQ=21) gCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAACCgaaga > 1:746540/1‑150 (MQ=25) ggTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGaagaag < 1:466075/150‑1 (MQ=255) tctcTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGa > 1:211619/1‑150 (MQ=21) ctctTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAggga < 1:3116137/150‑3 (MQ=18) ctctTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAggga < 1:2031287/150‑3 (MQ=18) tctTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGaaa > 1:978172/1‑150 (MQ=21) ctTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGaa > 1:2219405/1‑150 (MQ=255) ctTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAaag > 1:3519444/1‑150 (MQ=21) ttttACGTCTGAAGTGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGaagc < 1:3448578/150‑1 (MQ=18) tttATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAaagaag < 1:1518099/150‑1 (MQ=255) tttATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGAAAGaagca > 1:1631080/1‑150 (MQ=18) acgTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAaagaag < 1:2437813/143‑1 (MQ=21) aTGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGAaagaag < 1:2061311/145‑1 (MQ=18) aTGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGAaagaag < 1:1595471/145‑1 (MQ=18) aTGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGAaagaag < 1:2551662/145‑1 (MQ=18) tGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTAAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGAAAGAAGCAAGCg < 1:705560/150‑1 (MQ=18) tCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTcaca > 1:13900/1‑150 (MQ=255) cAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCacaa > 1:1539147/1‑150 (MQ=255) aGTACAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCacaagac > 1:252982/1‑150 (MQ=255) aaGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCACAAGACAAGAAAg < 1:1187633/150‑1 (MQ=255) | ‑‑‑‑‑CCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCACAAGACAAGAAAGGTT > Xen36_12/1‑280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |