| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Xen36_12 | 122 | 0 | G | . | 39.0% | 1034.3 / inf | 657 | intergenic (–/+499) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| Reads supporting (aligned to +/- strand): ref base G (203/193); new base . (136/117); total (342/315) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 700 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCACAAGACA > Xen36_12/1‑271 | aagaagaggaaagaagcaagcgattgtcacaagacaagaaaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTaaaa > 1:1137045‑M1/65‑150 (MQ=255) ggaggtcacacctgttcccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTaaaaa > 1:2123375‑M1/23‑150 (MQ=255) ggaggtcacacctgttcccatgCCGAACACAGAAGTTAAGCTCCTTAGCATCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTaaaaa > 1:178863‑M1/23‑150 (MQ=255) gccgaacacagaagttaagctcctgagcgtcgatggtagtcggacttacgttccgctagagtagaatgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAAtaaaag < 1:1122396‑M2/49‑2 (MQ=255) tcacacctgttcccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCaaagtaaaaattaac > 1:1525653‑M1/18‑145 (MQ=255) aggaaagaaccaagcgattgtcacaagacaagaaaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCaaagtaaaaattaac > 1:565071‑M1/59‑145 (MQ=255) aagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAaaacgtcaaaataaaagttaacacaaag < 1:2923286‑M2/60‑13 (MQ=255) tgttcccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGAACGCAAGGTATCTTTTTTTAAGTCTAAAATGTCGAAgtaaaaatt < 1:3636234‑M1/130‑3 (MQ=255) agttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTaaaacgtcaaaataaaagttaacacaaaga > 1:31203‑M2/90‑137 (MQ=255) tcccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAATAAAAAAGAAAACACAAAGaa < 1:1956404‑M1/143‑1 (MQ=255) cccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGtcaaagtaaaaattaacac < 1:1057615‑M1/135‑8 (MQ=255) ccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAaagaaaaaac < 1:3496037‑M1/137‑4 (MQ=255) cGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAACTGGCt > 1:215373/1‑150 (MQ=255) gAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAAAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCtcgg > 1:2830768/1‑147 (MQ=21) tcgcgatgcaagaaaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGc > 1:720608‑M1/39‑150 (MQ=255) cacaagacaagaaaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGCg > 1:2198000‑M1/38‑150 (MQ=255) aGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAg > 1:1883701/1‑111 (MQ=255) aGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTg < 1:3552577/150‑1 (MQ=255) aGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAGAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGaa > 1:614411/1‑150 (MQ=25) ggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGaaa < 1:3397849‑M2/83‑1 (MQ=255) ttAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGTTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGaaaa < 1:928728/150‑1 (MQ=25) ttAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTg > 1:419640/1‑138 (MQ=25) gCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAAGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGtt > 1:3431584/1‑150 (MQ=37) acttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGaa < 1:6720‑M2/92‑1 (MQ=255) acttaagttctgctagagtagaacgttgccaggcaagaaagggatgcgatgagccgcaTTGAGACCGCACGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGaa < 1:2336152‑M2/92‑1 (MQ=255) ttAGCGACGATGGTAG‑CCAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCCACGTAAAAA‑‑TTCACAAAAAAAAAAACGGCTTGGAGAAGTGAAAAAGTTTTAATc > 1:2296791/1‑150 (MQ=12) cgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGAc < 1:1409483‑M1/136‑1 (MQ=255) gATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACg > 1:1710045/1‑150 (MQ=255) cgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGaaa > 1:1001251‑M2/49‑150 (MQ=255) cgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaCTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATGAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGaaa > 1:304151‑M2/49‑150 (MQ=255) gctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTcaaaataaaagttaac < 1:3621504‑M2/54‑7 (MQ=255) gTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACga > 1:534107/1‑150 (MQ=38) tAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACgag < 1:373238/150‑1 (MQ=38) agtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGaa < 1:2685518‑M2/108‑1 (MQ=255) gtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTg < 1:1801637‑M2/72‑1 (MQ=255) gtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGaaa > 1:2560583‑M2/42‑150 (MQ=255) gtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGaaa < 1:2475695‑M2/109‑1 (MQ=255) gaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAaga > 1:259938‑M2/39‑150 (MQ=255) aacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAagag > 1:3360951‑M2/38‑150 (MQ=255) ttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCa < 1:1250086‑M2/117‑1 (MQ=255) ttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAgagcgta > 1:3517532‑M2/34‑148 (MQ=255) ttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAgagcgta > 1:845334‑M2/34‑148 (MQ=255) cGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAgcgc < 1:1344719/150‑1 (MQ=255) cGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAgcgc > 1:3265802/1‑150 (MQ=255) gTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAAc > 1:1634004/1‑150 (MQ=255) ccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTgacgaaccaagaaacgaacgtaacg > 1:1906081‑M2/31‑139 (MQ=255) ggcaagaaatggatgcgatgagccgcaTTAAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGt > 1:889846‑M2/28‑150 (MQ=255) cGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGt < 1:2223136/150‑1 (MQ=39) gcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGtt < 1:701731‑M2/124‑1 (MQ=255) caagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGttt < 1:3221884‑M2/125‑1 (MQ=255) cTAGAGTAGAACGTTGCCAGGCGAGTTGAGACCGCGAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGttt < 1:1871924/150‑1 (MQ=38) cTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTCAAAA‑‑TTAACAAAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAGAAGAGCGCAACGAGttt > 1:1036159/1‑150 (MQ=255) aagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTta < 1:1840875‑M2/126‑1 (MQ=255) agaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtag < 1:3108380‑M2/127‑1 (MQ=255) agaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtag < 1:1166669‑M2/127‑1 (MQ=255) atggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTaga < 1:3297165‑M2/131‑1 (MQ=255) gatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCt > 1:2180274‑M2/17‑150 (MQ=255) aaCGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCt > 1:1612064/1‑150 (MQ=38) aCGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGc < 1:1561741/150‑1 (MQ=255) tgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTaa > 1:2429052‑M2/15‑150 (MQ=255) gcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATATCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAACCGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTaaa > 1:961972‑M2/14‑150 (MQ=255) gTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTa < 1:2773812/150‑1 (MQ=255) ttGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTagag > 1:2249065/1‑146 (MQ=255) ttGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTaa < 1:78563/150‑1 (MQ=255) tGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGTAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATg < 1:2001760/150‑1 (MQ=37) ccAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAg < 1:1584584/150‑1 (MQ=37) cAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAATGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGa < 1:1500919/150‑1 (MQ=255) cAGGCAAGTTGAGACCACAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGCAACGAATTTAGTAGAGCTAAACGAGt > 1:1935556/1‑150 (MQ=255) agccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTa < 1:464361‑M2/143‑1 (MQ=255) agccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTa < 1:3244403‑M2/143‑1 (MQ=255) aGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAg < 1:3330175/150‑1 (MQ=255) ggCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAAc > 1:486624/1‑125 (MQ=38) gccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGGAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTaa > 1:1468229‑M2/7‑150 (MQ=255) gccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAaca < 1:641044‑M2/104‑2 (MQ=255) gCAAGTTGAGACCGCAAGGTCTCTTTTTT‑ACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGt < 1:2085227/150‑1 (MQ=25) tGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGagag < 1:2037185/150‑1 (MQ=25) gagaCCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTgaga > 1:3311701/1‑150 (MQ=255) agaCCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGcc < 1:3604914/150‑1 (MQ=25) gaCCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCg > 1:1205271/1‑150 (MQ=25) gaCCGCAAGGTCTCCTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCg > 1:2631555/1‑150 (MQ=21) ccGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCgaa > 1:25071/1‑150 (MQ=21) gCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAACCgaaga > 1:746540/1‑150 (MQ=25) ggTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATANAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAagag < 1:1380870/150‑1 (MQ=21) tctcTTTTTTTATGTCTAAAACGTCAAA‑‑AGAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAggg < 1:2103837/150‑2 (MQ=21) ctctTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAgg > 1:2549407/1‑150 (MQ=255) tctTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGaaa > 1:3455869/1‑150 (MQ=21) tctTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGCTTAGCAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGaaa > 1:978173/1‑150 (MQ=255) ttttATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAaagaa < 1:3649961/150‑1 (MQ=255) ttttATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTGGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGaagc < 1:382691/150‑1 (MQ=21) tttATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAaagaag < 1:1438702/150‑1 (MQ=255) tttATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAaagaag < 1:2990476/150‑1 (MQ=255) tATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGGAGAGGAAAGaagcaag < 1:647590/150‑1 (MQ=18) acgTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGaagcaagc < 1:811103/148‑1 (MQ=21) aTGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAaagaag < 1:1674246/145‑1 (MQ=21) aTGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGAaagaag < 1:3671459/145‑1 (MQ=18) gTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGTTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGa > 1:3175081/1‑150 (MQ=21) gTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGGGCCGAAGAAGAGGAAAGAAGCAAGCGa > 1:2442806/1‑150 (MQ=21) tCTAAAATGTCAAAGTAAAAAAGAAAACATAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCg > 1:1281988/1‑150 (MQ=255) tGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAaaga > 1:1224799/1‑135 (MQ=255) gTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCTGAAGAAGAGGAAAGAAGCAAGCGATTGTCacaagaca < 1:1738779/150‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCACAAGACA > Xen36_12/1‑271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |