| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Xen36_12 | 132 | 0 | A | T | 70.5% | 823.1 / inf | 636 | intergenic (–/+489) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| Reads supporting (aligned to +/- strand): ref base A (92/95); new base T (240/208); total (333/303) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 639 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑CCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCACAAGACAAGAAAGGTTC > Xen36_12/1‑281 | gttcccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAg < 1:11852‑M1/141‑1 (MQ=255) ccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAaagaaaaaac < 1:3496037‑M1/137‑4 (MQ=255) agcgattgtcacaagacaagaaaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCACAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAAt > 1:323055‑M1/47‑150 (MQ=255) gctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTNTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATg > 1:3554690‑M2/84‑150 (MQ=255) gCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCt < 1:2489473‑M1/149‑1 (MQ=255) ccGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGc > 1:1830697/1‑150 (MQ=255) ccGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGc > 1:3075503/1‑150 (MQ=255) gAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAAAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCtcgg > 1:894356/1‑147 (MQ=21) tcacaagacaagaaaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGc > 1:720610‑M1/39‑150 (MQ=255) agcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGc < 1:3621599‑M2/74‑1 (MQ=255) aaCACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGc < 1:581405/150‑1 (MQ=21) acacAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCg < 1:1656821/150‑1 (MQ=25) ttAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGTTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGaaaa < 1:928728/150‑1 (MQ=25) gtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGt > 1:1319344‑M2/64‑150 (MQ=255) aaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGCGAAGTGAAAACGt > 1:1571629‑M1/26‑150 (MQ=255) caacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTg < 1:491949‑M2/90‑1 (MQ=255) aacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGa < 1:1679011‑M2/91‑1 (MQ=255) tcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGaa > 1:2663959‑M1/21‑150 (MQ=255) acttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGaa < 1:6720‑M2/92‑1 (MQ=255) ttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTCAAAATTCA‑‑CACAAAGAAAAATGGCTTTGCGAAGTGGAAAAgtttggatc < 1:2296794‑M1/132‑5 (MQ=255) cGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTCTGTCTAAAATGTCAAAGTAAAAAAGGAACCACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCt > 1:1489497/1‑150 (MQ=255) cGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGa > 1:20968/1‑150 (MQ=37) gttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGAc < 1:823919‑M2/98‑1 (MQ=255) gttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGAc > 1:1515228‑M2/53‑150 (MQ=255) gTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTg < 1:2567826/150‑1 (MQ=255) cgacgatggtagccAACTTACGTTCCGCTAGAGTAAAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGAc > 1:2805786‑M1/15‑150 (MQ=255) cGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGt > 1:3460322/1‑131 (MQ=255) cgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGaaa > 1:1001251‑M2/49‑150 (MQ=255) tGGTAGTCGAACTTACGNTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAATTAAA‑‑ACAAAGAAAAATGGCTTGGTGAAGTGAAAACGTTTGAATCTGACGAAAc > 1:2539098/1‑150 (MQ=38) gctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGATACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAAc < 1:1133989‑M2/103‑1 (MQ=255) tagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAaacaa > 1:3373745‑M2/46‑148 (MQ=255) gTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACga > 1:2732008/1‑150 (MQ=38) gTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACga > 1:534107/1‑150 (MQ=38) agtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGaa > 1:3260246‑M2/43‑150 (MQ=255) tCGAACTTACGTTCCGCTAGAGTAGCCCGCCGCCCAGCAATTTGAGCCCGCACGGTCTCTTCTTTTATTTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAATGTTTGAATCTGACGAAAagagg > 1:1745803/1‑149 (MQ=255) tCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACgaga < 1:1981014/150‑1 (MQ=255) gtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCACGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGaaa > 1:2251351‑M2/42‑150 (MQ=255) gtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTg < 1:1801634‑M2/72‑1 (MQ=255) gtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGaaa > 1:2054687‑M2/42‑150 (MQ=255) gtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGaaa > 1:1947251‑M2/42‑150 (MQ=255) cGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGACATGAAAACGTTTGAATCTGACGAAACGAGaa > 1:389195/1‑150 (MQ=255) agaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAag > 1:3528489‑M2/40‑150 (MQ=255) gaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAaga > 1:3759944‑M2/39‑150 (MQ=255) aaCTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGaaaa < 1:1275104/150‑1 (MQ=255) aCTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCACAGTGAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGaaaagagaaaagag > 1:3408446/1‑150 (MQ=38) aCTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAag < 1:2909191/150‑1 (MQ=255) tACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGa < 1:865055/115‑1 (MQ=38) gttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAgcgc > 1:365243‑M2/35‑150 (MQ=255) cGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCaa > 1:3683678/1‑150 (MQ=255) gccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAAc > 1:1429927‑M2/32‑150 (MQ=255) gTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAAc > 1:2029462/1‑150 (MQ=255) gTTCCGCGAGAGGAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGaaa < 1:3326857/140‑1 (MQ=255) cGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGt > 1:3213938/1‑150 (MQ=39) cTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTCAAAA‑‑TTAACAAAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAGAAGAGCGCAACGAGttt > 1:1036159/1‑150 (MQ=255) tAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTta < 1:221175/150‑1 (MQ=38) aagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGAc > 1:429115‑M2/25‑122 (MQ=255) agagTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtag < 1:3027270/150‑1 (MQ=39) agaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTtag > 1:3639699‑M2/24‑150 (MQ=255) gagTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtagt < 1:3174567/150‑1 (MQ=39) gagTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtagt < 1:2234080/150‑1 (MQ=39) gTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtagt > 1:1059441/1‑150 (MQ=255) tAGAACGTTACCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTaga < 1:243417/150‑1 (MQ=38) aGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATGTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTagag < 1:651395/150‑1 (MQ=38) gatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCt > 1:297299‑M2/17‑150 (MQ=255) gatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAAAGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCt > 1:1890794‑M2/17‑150 (MQ=255) gcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATATCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAACCGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTaaa > 1:961972‑M2/14‑150 (MQ=255) ttGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTaa < 1:78563/150‑1 (MQ=255) ttGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAAAGCGCAACGAGTTtagccgaactaaat > 1:1875436/1‑139 (MQ=255) tgattaGGCGAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTg < 1:1355035/97‑1 (MQ=255) cgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAAt < 1:1446161‑M2/138‑1 (MQ=255) cgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAAt > 1:1723447‑M2/13‑150 (MQ=255) tGCCAGGCAAGTTGAGACCGCAAGGCCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACGAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATg < 1:1214310/150‑1 (MQ=37) tgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAg < 1:3306944‑M2/141‑1 (MQ=255) ccAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAg < 1:2187853/150‑1 (MQ=37) cAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGa > 1:3345958/1‑150 (MQ=255) cgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGGGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGt < 1:114919‑M2/146‑1 (MQ=255) cgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAagc > 1:1239854‑M2/5‑149 (MQ=255) gTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtagtag > 1:3277882/1‑131 (MQ=37) attGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTgag < 1:1933668/149‑1 (MQ=25) ttGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTga < 1:2114978/150‑1 (MQ=255) tGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGagag > 1:628270/1‑150 (MQ=25) tGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTAagag > 1:1862245/1‑150 (MQ=25) agaCCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGcc < 1:3604914/150‑1 (MQ=25) agaCCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAATGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGttt < 1:2475353/122‑1 (MQ=37) gaCCGCAAGGTCTCCTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCg > 1:2631554/1‑150 (MQ=21) aCCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGcc < 1:2166400/150‑1 (MQ=255) ccGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCaa < 1:642278/112‑1 (MQ=38) ccGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAATAGAGCTAAATGAGTAAGCGAGAGCCgaa > 1:2147152/1‑150 (MQ=255) gCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAACCgaaga > 1:746540/1‑150 (MQ=25) ggTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGaagaag < 1:466075/150‑1 (MQ=255) ctctTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAggga < 1:3116137/150‑3 (MQ=18) tctTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGaaa > 1:978172/1‑150 (MQ=21) ttttACGTCTGAAGTGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGaagc < 1:3448578/150‑1 (MQ=18) tttATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGAAAGaagca > 1:1631080/1‑150 (MQ=18) aTGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGAaagaag < 1:2551662/145‑1 (MQ=18) aTGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGAaagaag < 1:1595471/145‑1 (MQ=18) tGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTAAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGAAAGAAGCAAGCg < 1:705560/150‑1 (MQ=18) cgTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCg < 1:235157/149‑1 (MQ=21) tCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTcaca > 1:13900/1‑150 (MQ=255) cAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCacaa > 1:1539147/1‑150 (MQ=255) | ‑‑‑‑‑‑‑‑‑CCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCACAAGACAAGAAAGGTTC > Xen36_12/1‑281 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |