| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Xen36_12 | 123 | 0 | T | . | 38.3% | 1170.5 / inf | 648 | intergenic (–/+498) | –/gabR | –/HTH‑type transcriptional regulatory protein GabR |
| Reads supporting (aligned to +/- strand): ref base T (209/190); new base . (132/116); total (342/306) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 698 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCACAAGACAA > Xen36_12/1‑272 | gcaaggaggtcacacctgttcccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTa < 1:2137203‑M1/124‑1 (MQ=255)gcaaggaggtcacacctgttcccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTGAAATGTCAAAGTa < 1:3398697‑M1/124‑1 (MQ=255) ggaggtcacacctgttcccatgCCGAACACAGAAGTTAAGCTCCTTAGCATCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTaaaaa > 1:178863‑M1/23‑150 (MQ=255) gaggtcacacctgttcccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGtaaaaat > 1:623913‑M1/22‑149 (MQ=255) cacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGtcaaaataaaagttaaca < 1:3366315‑M2/55‑8 (MQ=255) agaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAacgtcaaaataaaagttaacacaa > 1:1094656‑M2/93‑140 (MQ=255) aagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAaaacgtcaaaataaaagttaacacaaag < 1:1203075‑M2/60‑13 (MQ=255) aagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAaaacgtcaaaataaaagttaacacaaag < 1:2923286‑M2/60‑13 (MQ=255) agttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTaaaacgtcaaaataaaagttaacacaaaga > 1:31203‑M2/90‑137 (MQ=255) ttcccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGa > 1:1136019‑M1/9‑150 (MQ=255) cccatgCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGtcaaagtaaaaattaacac < 1:2338952‑M1/135‑8 (MQ=255) cccatgCCGAACAAAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGCCTCTTTTTTTACGTCTACAATGtcaaagtaaaaattaacac < 1:1057613‑M1/135‑8 (MQ=255) gctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTNTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATg > 1:3554690‑M2/84‑150 (MQ=255) cttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCtt < 1:1631556‑M2/71‑1 (MQ=255) gAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAAAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCtcgg > 1:2830768/1‑147 (MQ=21) tcacaagacaagaaaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAATGGCTTGGc > 1:720610‑M1/39‑150 (MQ=255) agcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGc < 1:3621599‑M2/74‑1 (MQ=255) aaCACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGc < 1:581405/150‑1 (MQ=21) acacAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCg < 1:3043290/150‑1 (MQ=25) caagaaaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAGAAATTAA‑‑CACAAAAAAAAATGGATTGGCGa < 1:1669507‑M1/114‑1 (MQ=255) caagaaaggttcttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAATTAA‑‑CACAAAGAAAAAtggcttggcaaagcgga < 1:3304398‑M1/120‑9 (MQ=255) ttAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGTTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGaaaa < 1:928728/150‑1 (MQ=25) agtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACg > 1:1554812‑M2/65‑150 (MQ=255) gtcgaacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGt > 1:1164335‑M2/64‑150 (MQ=255) caacttacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTg < 1:491949‑M2/90‑1 (MQ=255) ttagcgacgatggtagccAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTCAAAATTCA‑‑CACAAAGAAAAATGGCTTTGCGAAGTGGAAAAgtttggatc < 1:2296794‑M1/132‑5 (MQ=255) tAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAGAAATGGCTTGGCGAAGTGAAAACGTTTGAATc > 1:2157714/1‑150 (MQ=37) tacgttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCt > 1:2487353‑M2/56‑150 (MQ=255) tttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGAc < 1:2181183‑M2/98‑1 (MQ=255) gttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGAc < 1:1322801‑M2/98‑1 (MQ=255) ttccgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACg < 1:3732543‑M2/99‑1 (MQ=255) cGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGt > 1:3460322/1‑131 (MQ=255) gATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAAAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACg > 1:2429173/1‑150 (MQ=255) cgctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGaaa > 1:1001251‑M2/49‑150 (MQ=255) ctagagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAAAACAAAGAAGAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAaca > 1:1611521‑M2/47‑149 (MQ=255) gTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACga > 1:534109/1‑150 (MQ=38) tAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACgag < 1:1524434/150‑1 (MQ=38) gagtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGTTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACaaga < 1:3605282‑M2/107‑1 (MQ=255) agtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGaa < 1:2685518‑M2/108‑1 (MQ=255) gtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCACGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGaaa > 1:2251351‑M2/42‑150 (MQ=255) gtagaacgttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTg < 1:1801637‑M2/72‑1 (MQ=255) ttgccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAgagcgta > 1:845334‑M2/34‑148 (MQ=255) aCGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAgcg < 1:190928/150‑1 (MQ=255) cGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAgcgc > 1:3265802/1‑150 (MQ=255) gTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTCTGTCTCAAATGTCAAAGTAAAAA‑‑TCAACACAAAGAAAAATGGCTTGGCGAAGTGGAAACGTTTGAACTTGACGAAAAAAAAAAAGAGCGCaaa > 1:2007788/1‑149 (MQ=255) gTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAAc > 1:1433843/1‑150 (MQ=255) ccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTCTGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACg > 1:3673295‑M2/31‑150 (MQ=255) ccaggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGttt > 1:1395549‑M2/31‑119 (MQ=255) ggcaagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACATCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGt > 1:1884093‑M2/28‑150 (MQ=255) ggcaagaaatggatgcgatgagccgcaTTAAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGt > 1:889846‑M2/28‑150 (MQ=255) caagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGttt < 1:3221884‑M2/125‑1 (MQ=255) cTAGAGTAGAACGTTGCCAGGCGAGTTGAGACCGCGAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGttt < 1:1871924/150‑1 (MQ=38) cTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGttt > 1:1036158/1‑150 (MQ=39) aagaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTta < 1:1840875‑M2/126‑1 (MQ=255) agaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtag < 1:3108380‑M2/127‑1 (MQ=255) agaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTtag > 1:3639699‑M2/24‑150 (MQ=255) gagTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTtagt > 1:1972865/1‑150 (MQ=39) gaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAACACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTtagt > 1:2551299‑M2/23‑150 (MQ=255) gaaatggatgcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTtagt > 1:2107978‑M2/23‑150 (MQ=255) aGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATGTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTagag < 1:651395/150‑1 (MQ=38) gAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGTGCAACGAGTTTAGTAGAGc > 1:331788/1‑150 (MQ=255) gcgatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATATCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAACCGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTaaa > 1:961972‑M2/14‑150 (MQ=255) gTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTa < 1:2773812/150‑1 (MQ=255) gTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTa < 1:702026/150‑1 (MQ=255) ttGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTaa < 1:78563/150‑1 (MQ=255) tGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATg < 1:1499089/150‑1 (MQ=37) gatgagccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAg > 1:1242072‑M2/12‑133 (MQ=255) gatgagccgcaTTGAGACCGCAAGGTCCCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATg < 1:2225883‑M2/139‑1 (MQ=255) ccAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATg < 1:2044685/150‑1 (MQ=255) ccAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAg < 1:1584582/150‑1 (MQ=37) cAGGCAAGTTGAGACCACAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGt > 1:1935559/1‑150 (MQ=37) agccgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTa < 1:3244403‑M2/143‑1 (MQ=255) aGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAATGAGTTTAGTAGAGCTAAATGAg < 1:2525743/150‑1 (MQ=255) cgcaTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGGGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGt < 1:2599805‑M2/146‑1 (MQ=255) aGTTGAGACCGCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGCAACGAGTTTAGTAGAGCTa > 1:1220262/1‑137 (MQ=37) gTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTgag > 1:42776/1‑150 (MQ=37) tGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGagag < 1:383/150‑1 (MQ=37) gagaCCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGc < 1:245035/150‑1 (MQ=25) gaCCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTCGAGCTAAATGAGTAAGCGAGAGCCg > 1:680008/1‑150 (MQ=255) gaCCGCAAGGTCTCCTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCg > 1:2631555/1‑150 (MQ=21) ccGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCaa < 1:642275/112‑1 (MQ=38) cGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCgaag < 1:1373238/150‑1 (MQ=21) gCAAGGTCTCTTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAACCgaaga > 1:746540/1‑150 (MQ=25) aaGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGaagaag < 1:2087580/150‑1 (MQ=25) ggTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGaagaag < 1:466075/150‑1 (MQ=255) gTCTCTTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAgg < 1:3344651/150‑1 (MQ=21) ctctTTTTTTGTGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAGAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACAAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGaa > 1:2562006/1‑150 (MQ=18) tctTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGaaa > 1:128066/1‑150 (MQ=21) tctTTTTTTATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACAAGAAAAGAGCGTAACGAGCTTAGCAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGaaa > 1:978173/1‑150 (MQ=255) ctTTTTTTACGTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAaag > 1:3519444/1‑150 (MQ=21) ttttATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAaagaa < 1:3649962/150‑1 (MQ=255) ttttATGTCTAAAACGTCAAA‑‑ATAAAAGTTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGGAAGaagc > 1:2199173/1‑150 (MQ=18) ttttACGTCTGAAGTGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGaagc < 1:3448578/150‑1 (MQ=18) tttATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAaagaag < 1:2990476/150‑1 (MQ=255) acgTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGaagcaagc < 1:811103/148‑1 (MQ=21) cgTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCg > 1:1705675/2‑150 (MQ=21) gTCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGTTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGa > 1:3175081/1‑150 (MQ=21) tCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAGGAATAGGAAAGAAGCAAGCg < 1:3496332/150‑1 (MQ=255) tCTAAAATGTCAAAGTAAAAA‑‑TTAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGAt > 1:145792/1‑150 (MQ=21) gTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCTGAAGAAGAGGAAAGAAGCAAGCGATTGTCacaagaca < 1:1738779/150‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAGTTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAATGTCAAAGTAAAAAAGAAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGTGAGAGCCGAAGAAGAGGAAAGAAGCAAGCGATTGTCACAAGACAA > Xen36_12/1‑272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |