mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.38.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP028101 | 618,209 | 0 | C | G | 65.9% | 166.4 / inf | 362 | noncoding (2881/2928 nt) | C7Y58_03125 | 23S ribosomal RNA |
| * | CP028101 | 1,530,400 | 1 | . | C | 45.5% | 39.6 / 73.7 | 33 | pseudogene (3/325 nt) | C7Y58_07345 | hypothetical protein |
| * | CP028101 | 1,054,222 | 0 | G | . | 43.4% | 161.6 / 165.4 | 100 | coding (138/150 nt) | C7Y58_05125 | site‑specific DNA‑methyltransferase (Type III DNA modification enzyme) |
| * | CP028101 | 1,228,379 | 0 | T | . | 35.0% | 86.4 / 46.5 | 40 | intergenic (‑122/‑108) | C7Y58_05905/C7Y58_05910 | hypothetical protein/hypothetical protein |
| * | CP028101 | 2,048,973 | 0 | G | T | 31.6% | 147.3 / 23.7 | 76 | G469G (GGC→GGA) | C7Y58_09935 | helicase SNF |
| * | CP028101 | 1,308,201 | 0 | C | T | 30.8% | 212.8 / 18.5 | 105 | E220K (GAA→AAA) | cobA | uroporphyrinogen‑III C‑methyltransferase |
| * | CP028101 | 1,828,290 | 0 | C | T | 27.3% | 262.8 / 127.0 | 154 | T189M (ACG→ATG) | C7Y58_08830 | MBL fold metallo‑hydrolase |
| * | CP028101 | 1,308,184 | 0 | A | G | 26.9% | 217.5 / 18.1 | 113 | T225T (ACT→ACC) | cobA | uroporphyrinogen‑III C‑methyltransferase |
| * | CP028101 | 216,976 | 0 | T | G | 25.0% | 619.9 / 27.3 | 226 | G513G (GGT→GGG) | C7Y58_01095 | protein translocase subunit SecA |
| * | CP028101 | 2,117,251 | 0 | T | G | 21.4% | 692.0 / 32.6 | 281 | V506G (GTT→GGT) | C7Y58_10195 | PTS fructose transporter subunit IIC |
| * | CP028101 | 1,308,193 | 0 | A | T | 20.0% | 242.1 / 10.9 | 105 | N222K (AAT→AAA) | cobA | uroporphyrinogen‑III C‑methyltransferase |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP028101 | 1018685 = | 95 (0.680) | 19 (0.140) | 16/438 | 2.0 | 16.7% | coding (631/921 nt) | C7Y58_04970 | hypothetical protein |
| ? | CP028101 | = 1018757 | 95 (0.680) | coding (703/921 nt) | C7Y58_04970 | hypothetical protein | |||||
| * | ? | CP028101 | 2060542 = | 263 (1.870) | 17 (0.120) | 12/440 | 2.4 | 6.0% | coding (172/1413 nt) | C7Y58_09990 | alanine:cation symporter family protein |
| ? | CP028101 | = 2060554 | 274 (1.960) | coding (184/1413 nt) | C7Y58_09990 | alanine:cation symporter family protein | |||||
| * | ? | CP028101 | = 1017553 | 136 (0.970) | 10 (0.080) | 7/408 | 2.9 | 7.2% | coding (1848/2319 nt) | C7Y58_04965 | hypothetical protein |
| ? | CP028101 | 1017608 = | 133 (1.030) | coding (1903/2319 nt) | C7Y58_04965 | hypothetical protein | |||||
| * | ? | CP028101 | 14634 = | NA (NA) | 6 (0.040) | 6/432 | 3.2 | NA | coding (278/1482 nt) | C7Y58_00080 | IS1182‑like element ISFnu1 family transposase |
| ? | CP028101 | 15120 = | NA (NA) | coding (764/1482 nt) | C7Y58_00080 | IS1182‑like element ISFnu1 family transposase | |||||
| * | ? | CP028101 | = 1628697 | 129 (0.920) | 6 (0.040) | 4/434 | 3.6 | 7.2% | coding (628/744 nt) | C7Y58_07860 | hypothetical protein |
| ? | CP028101 | = 1628907 | 27 (0.200) | coding (418/744 nt) | C7Y58_07860 | hypothetical protein | |||||
| * | ? | CP028101 | = 1538202 | 40 (0.280) | 4 (0.030) | 4/424 | 3.6 | 6.8% | coding (1082/1995 nt) | aroB | bifunctional 3‑dehydroquinate synthase/phosphatase |
| ? | CP028101 | = 1539472 | 72 (0.530) | coding (692/774 nt) | C7Y58_07385 | hypothetical protein | |||||
| * | ? | CP028101 | = 1378569 | 168 (1.200) | 4 (0.030) | 4/414 | 3.6 | 2.7% | coding (229/561 nt) | C7Y58_06605 | chromate transporter |
| ? | CP028101 | = 1378689 | 127 (0.970) | coding (349/561 nt) | C7Y58_06605 | chromate transporter | |||||
| * | ? | CP028101 | 1002075 = | NA (NA) | 4 (0.030) | 4/422 | 3.6 | 100% | coding (489/1482 nt) | C7Y58_04910 | IS1182‑like element ISFnu1 family transposase |
| ? | CP028101 | 1002413 = | 0 (0.000) | coding (151/1482 nt) | C7Y58_04910 | IS1182‑like element ISFnu1 family transposase | |||||
| * | ? | CP028101 | = 14507 | NA (NA) | 4 (0.030) | 4/422 | 3.6 | NA | coding (151/1482 nt) | C7Y58_00080 | IS1182‑like element ISFnu1 family transposase |
| ? | CP028101 | = 14845 | NA (NA) | coding (489/1482 nt) | C7Y58_00080 | IS1182‑like element ISFnu1 family transposase | |||||
| * | ? | CP028101 | = 134236 | 220 (1.570) | 3 (0.020) | 3/420 | 3.8 | 1.2% | coding (363/534 nt) | C7Y58_00665 | 50S ribosomal protein L6 |
| ? | CP028101 | = 134652 | 280 (2.100) | coding (370/399 nt) | C7Y58_00670 | 30S ribosomal protein S8 | |||||