Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP028101	1,530,400	1	.	C	45.5%	39.6 / 73.7	33	pseudogene (3/325 nt)	C7Y58_07345	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (10/8);  new base C (8/7);  total (18/15)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.00e-01
Rejected as consensus: Frequency below/above cutoff threshold.

GCTTTAAACTTTGGAGTGTCAGTAATTAAACCTACATCCCCATATTCTTCCAT‑TTCAATCTGCATCTTAGCTTTTTTCTTTTTTCCTTTTGCATAAGAAT‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACTATTTTTAGTTCCTCTGTATTGAACATCAAATAATAAATC  >  CP028101/1530155‑1530645                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                       gCTTTAAACTTTGGAGTGTCAGTAATTAAACCTACATCCCCATATTCTTCCAT‑TTCAATCTGCATCTTAGCTTTTTTCTTTTTTCCTTTTGCATAAGAAT‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATA‑TAAAACAAACAAATTATAATCTGTATCT‑ATTCTACCCCCCCCCCC‑aaaaaa                                                                                                                                                                                                                                                  >  2:147957/1‑246 (MQ=255)                  ttCAGTAATTAAACCTACATCCCCATATTCTTCCAT‑TTCAATCTGCATCTTAGCTTTTTTCTTTTTTCCTTTTGCATAAGAAT‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑agagggggggtagaatatatac                                                                                                                                                                                                                                  <  1:111132/250‑19 (MQ=255)                   tCAGTAATTAAACCTTCATCCCCATATTCTTCCAT‑TTCAATCTGCATCTTAGCTTTTTTCTTTTTTCCTTTTGCATAAGAAT‑CTTCATTTGTTCCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAata                                                                                                                                                                                                                                     <  2:558795/247‑1 (MQ=255)                   tCAGTAATTAAACCTACATCCCCATATTCTTCCAT‑TTCAATCTGCATCTTAGCTTTTTTCTTTTTTCCTTTTGCATAAGAAT‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAAGTCTCTCCTCG‑TTTTATTCTATAATAAAACAAGCAAATTATAATCGGTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAata                                                                                                                                                                                                                                     >  1:558795/1‑247 (MQ=255)                        aaTTAAACCTACATCCCCATATTCTTCCAT‑TTCAATCTGCATCTTAGCTTTTTTCTTTTTTCCTTTTGCATAAGAAT‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑A‑AGaaaaaaaaaacaaaaaatatctttt                                                                                                                                                                                                                           >  1:8032/1‑234 (MQ=255)                         tttaagtcttcattcccATATTCTTC‑ATATACAATCTGCATCTTAGCTTTTTTATATTTTCCTTTTGCATAAGAAT‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTT‑TAATATTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAAAAAAAATCTGTTTAT‑ATTCTTCCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTtat                                                                                                                                                                                                                           <  2:534518/237‑1 (MQ=255)                            aaaCCTACATCCCCATATTCTTCCAT‑TTCAATCTGCATCTTAGCTTTTTTCTTTTTTCCTTTTGCATAAGAAT‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAAAAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCCCAGAGAATAAAAATCAAATATATTCTTtatat                                                                                                                                                                                                                         <  1:669742/251‑1 (MQ=255)                                       cccATATTCTTCCAT‑TTCAATCTGCATCTTAGCTTTTTTCTTTTTTCCTTTTGCATAAGAAT‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTTTTTATATAGTAAGTataaa                                                                                                                                                                                                             >  1:198396/1‑251 (MQ=255)                                          caaatttttcaatttcaatcggatacTTAGTTTTTTTCTTTTTTC‑TATTTCAAAAAAATTCTTCATTTGAACCAAAAAAAACAA‑AAATGCCAAAATGGATTAA‑AAAAAACTTGGTCCTTTTTAATTCCTAATT‑AAAACTCTCTCTTCT‑TTTTATCCTATAAAAAAACAAACAATTTAAAATCT‑TAAATTATTTTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTataaata                                                                                                                                                                                                           <  1:580675/226‑1 (MQ=255)                                          atatTCTTCCAT‑TTCAATCTGCATCTTAGCTTTTTTCTTTTTTCCTTTTGCATAAGAAT‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTataaataa                                                                                                                                                                                                          <  1:415963/251‑1 (MQ=255)                                               cttcCAT‑TTCAATCTGCATCTTAGCTTTTTTCTTTTTTCCTTTTGCATAAGAAT‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCA‑AGAGAATAAAAATCAATTATATTCTTTACATAGTACGTATAATTAttataa                                                                                                                                                                                                     >  2:356792/1‑250 (MQ=255)                                                                                                     t‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAActt                                                                                                                                               >  2:219885/1‑250 (MQ=255)                                                                                                       cTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTCCCCCCCCCCCCCAgaga                                                                                                                                                                                                                                                   <  1:33866/152‑1 (MQ=255)                                                                                                       cTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCCCAgaga                                                                                                                                                                                                                                                   >  2:33866/1‑152 (MQ=255)                                                                                                          cATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCCCAGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAA‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTg                                                                                                                                            >  1:497080/1‑251 (MQ=255)                                                                                                                         ggATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCCCAGAAAAAAAAAATAAAATATATTCTTTATATAGTAAGTATAAATAAAATATAT‑TAAATTTAATAAATTTTAAAAATTTGTTTAAAATAAAAAAATGATTaattttttttttttcaaaaatta                                                                                                                             >  2:324029/2‑230 (MQ=255)                                                                                                                         aGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCCCAAAAAAAAAAAATAAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAATTTTTAAAAATTTGCTTAAAATAAAAAAAGAATTAATTTTTGTTTCTTGCAAAAGt                                                                                                                              >  2:328501/1‑250 (MQ=255)                                                                                                                         aGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCa                                                                                                                            >  1:456978/1‑251 (MQ=255)                                                                                                                          gATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑AAAAAAAAAAAATCAAATATATTTTTTTTTAAGTAAATATAAATAA‑ATAAAAATAAATTTAATAAATTTTAAAAATTTGTTTAAAAAAAAAAAAAGATTTACTATTGTTTTTTGAAAAAGTCaa                                                                                                                           >  2:290627/1‑251 (MQ=255)                                                                                                                                     cTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAg                                                                                                                 <  1:691741/250‑1 (MQ=255)                                                                                                                                            g‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTataaataa                                                                                                                                                                                                          >  1:116037/1‑155 (MQ=255)                                                                                                                                                  ataaACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCCCAGAGAAAAAAAATAAAATATATTCTTTTTATAGTAATTATAAAAAATATAAAA‑TAAATTTAAAAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTTTTTTTTTTTGAAAAAGTAAAACCTAATTAAaaaattaaattt                                                                                                     >  2:591965/1‑249 (MQ=255)                                                                                                                                                       aaaaactgttcTTTTTAATTTCATTTTTAAAAC‑CTCTCC‑CTCTTTTATTTTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAattaaatattaaat                                                                                                <  1:147957/241‑1 (MQ=255)                                                                                                                                                                    tttAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCCCAGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAAt                                                                                    <  1:328501/251‑1 (MQ=255)                                                                                                                                                                                                                   aacaaacaAATTATAATCTGTATAT‑AGTCTACCCCCCCCCCCCAGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTACAAATAATATATAG‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCaacaac                                                           <  1:618859/231‑1 (MQ=255)                                                                                                                                                                                                                            aagacagtCTGTATAT‑ATTCTACCCCCCCCCCCCAGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACTATTTTTAGTTc                              <  2:540233/244‑1 (MQ=255)                                                                                                                                                                                                                                   tCTGTATAT‑ATTCTACCCCCCCCCCCCAGAGAATAAAAATCAAATATATTCTTTATATCGTAAGTATAAATAATATATAC‑AAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTGAATCCTTATTAGAAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCAAAATCCAAAAACACTGTCATAAAATTTACTATTTTTAGTTCATCTgaa                       >  2:637055/1‑249 (MQ=255)                                                                                                                                                                                                                                   tCTGTATAT‑ATTCTACCCCCCCCCCCCAGAGAATAAAAATCAAAAATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAGAATTAGATTTTTTTAAAAATACTGTGTAAATCCAACTCCACCAACACTGTCATAAAATTTACTATTTTTATTTc                              >  1:540233/1‑244 (MQ=255)                                                                                                                                                                                                                                      gTATAT‑ATTCTACCCCCCCCCCCCAGAGAATAAAAATCAAATATATTCTTTATATATTAAGTATAAATAATATATAC‑AAAATTTAATAAATTTTAAAAATTTGCTTAAAAAAAAAAAAGGATTAACTTTTGTTTCTTGCAAAAGTCAATCTTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTTTAAATCCAACTCAAAAAACACTGTTATAAAATTTACTATTTTTAGTTCCTCTTTAt                      >  2:372292/1‑249 (MQ=255)                                                                                                                                                                                                                                      gTATAT‑ATTCTACCCCCCCCCCCCAGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATaaaa                                               <  1:368445/224‑1 (MQ=255)                                                                                                                                                                                                                                      gTATAT‑ATTCTACCCCCCCCCCCCAGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACTATTTTTAGTTCCTCTGTAt                      <  1:372292/249‑1 (MQ=255)                                                                                                                                                                                                                                      gTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACTATTTTTAGTTCCTCTGTATTGa                   >  2:570857/1‑251 (MQ=255)                                                                                                                                                                                                                                      gTATAT‑ATTCTACCCCCCCCCC‑‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTATCTCTTGTTTCTTGCAAATGTCAATCCTTATTATTAATTTAAATATTAAATTTTTTTAAAAATAGTGGGTAAATCCAACTCATACAACACTGTCATAAAATTTACTATTTTTAGTTCCTCTGTATTGaa                  >  1:573312/1‑251 (MQ=255)                                                                                                                                                                                                                                        ttat‑atTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACTATTTTTAGTTCCTCTGTATTGAAc                 <  2:198396/250‑1 (MQ=255)                                                                                                                                                                                                                                        aaat‑atTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACTATTTTTAGTTCCTCTGTATTGAAc                 <  1:290627/249‑1 (MQ=255)                                                                                                                                                                                                                                         tatataatataaccacccaac‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACTATTTTTAGTTCCTCTGTATTGAAc                 <  2:573312/231‑1 (MQ=255)                                                                                                                                                                                                                                                tacccccccccccc‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACTATTTTTAGTTCCTCTGTATTGAACATCAaat          <  1:111953/248‑1 (MQ=255)                                                                                                                                                                                                                                                        cccccc‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAATACTGTCATAAAATTTACTATTTTTAGTTCCTCTGTATTg                    >  2:715436/1‑233 (MQ=255)                                                                                                                                                                                                                                                        cccccc‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACTATTTTTAGTTCCTTTGTATTg                    <  1:715436/233‑1 (MQ=255)                                                                                                                                                                                                                                                        cccccc‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGAAAATCCAACTCCAACAACACTGTCATAAAATTTACTATTTTTAGTTCCTCTGTATTGAACATCAAATAATAAatc  <  1:219885/251‑1 (MQ=255)                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                       GCTTTAAACTTTGGAGTGTCAGTAATTAAACCTACATCCCCATATTCTTCCAT‑TTCAATCTGCATCTTAGCTTTTTTCTTTTTTCCTTTTGCATAAGAAT‑CTTCATTTGTACCAATAAAGATAATAAATGCTAAAATG‑ATTAATAAACAACTTG‑TACTTTTTAATTTCATATT‑AAAACTCTCTCCTCT‑TTTTATTCTATAATAAAACAAACAAATTATAATCTGTATAT‑ATTCTACCCCCCCCCCC‑AGAGAATAAAAATCAAATATATTCTTTATATAGTAAGTATAAATAATATATAC‑TAAATTTAATAAATTTTAAAAATTTGCTTAAAATAAAAAAAGGATTAACTCTTGTTTCTTGCAAAAGTCAATCCTTATTAGTAAATTAAATATTAAATTTTTTTAAAAATAGTGTGTAAATCCAACTCCAACAACACTGTCATAAAATTTACTATTTTTAGTTCCTCTGTATTGAACATCAAATAATAAATC  >  CP028101/1530155‑1530645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑