Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0281011,228,3790T.35.0% 86.4 / 46.5 40intergenic (‑122/‑108)C7Y58_05905/C7Y58_05910hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (15/11);  new base . (6/8);  total (21/19)
Fisher's exact test for biased strand distribution p-value = 5.10e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.17e-01
Rejected as consensus: Frequency below/above cutoff threshold.

ATAACTAGCATTATAAAAATAAGAATTATAATAAAGTTCATTATTTTCCCACTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTTATTATAATGATGATAGTTTTTTCACTTTTAACTTTTTTAGTTGACATAGTTTTACTTATCAGATTTATTACATTAATAAAACAAATATTCTATAAAGATTACTC  >  CP028101/1228135‑1228608
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                         
ttaACAAGCATTAAAAAAAAAAAAATTAAAAAAAAGTTCATTTTTTTCCAACTTTATTAAAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCAGGACTTGAAAAAACATTCACAAAAAATAAAAAAAAAAAAGTAAAAATTAAAAAAATTTTTTTCAAAAACTCCTTTCAATTTTTTAAAATAA‑TTTTTTAAAAAAACATCTTTTTTATTTTAGTCGTTTTTTTTTTTTTTTTT‑‑‑‑CAAGCAc                                                                                                                                                                                                                                 <  2:181715/250‑1 (MQ=255)
ataACTTGCATTATAAAAATAAAAATTATAATAAAGTTTATTATTTTTCCACTTTATATCAAATTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTTAAAAAACATTCACACAAAATACAAAAAAAAAAATCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTTTAAAATAA‑TTTTTTATAAAATCATCTTTTCTATTATAGTCGTTTTTTTTTTTTTTTTT‑‑‑‑CAAGCAc                                                                                                                                                                                                                                 <  1:301888/251‑1 (MQ=255)
 aaacaggCATTAAAAAAATAAAAATTATAAAAAAATTTATTATTTTCCCACTTTATATCAAATTTAATTCTTCCATTAAGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAAAACAAAAAATAAAATCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTTTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCAc                                                                                                                                                                                                                                 <  1:244692/245‑1 (MQ=255)
       gCATTATAAAAATAAGAATTATAATAAAGTTCATTATTTTCCCACTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑AAAGCAc                                                                                                                                                                                                                                 >  2:244692/1‑245 (MQ=255)
         aTTATAAAAATAAGAATTATAATAAAGTTCATTATTTTCCCACTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTT‑‑‑‑‑CAAGCACTGTTTGaaaa                                                                                                                                                                                                                       <  2:502056/251‑1 (MQ=255)
          ttATAAAAATAATAATTATAATAAATTTCATTATTTTCCAACTTTATATCAATTTTAAAATTTCCATTAGGATAAATTTTAAAAAAATCTTCTGGACTTGCAAAAACATTCACAAAAAATTAAAAAAATAAAGACAAAATTAAAAAAATCTTTTTCAAAAACTCCTTTTATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTTTATTATTGTCGTTTTTTTTTTTTTTTTT‑‑‑‑CAAGCACTGTTTGaaaa                                                                                                                                                                                                                       <  2:307106/251‑1 (MQ=255)
                                   gTTCATTATTTTCCCACTTTATATCAAGTTTAATTCTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAAAAAAATCAAAATTAAAAAAAACTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTTTTTCAAGCACTGTTTGaaaa                                                                                                                                                                                                                       <  1:49542/230‑1 (MQ=255)
                                   gTTCATTATTTTCCCACTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTTTTTCAATCACTGTTTGaaaactgtttcttatacacttcttt                                                                                                                                                                                                  >  2:49542/1‑230 (MQ=255)
                                      cATTATTTTCCCACTTTATATCAAGTTTAATACTTTCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTT‑‑‑‑CAAGCACTGTTTGaaaa                                                                                                                                                                                                                       <  2:660840/223‑1 (MQ=255)
                                      cATTATTTTCCCACTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTT‑‑‑‑CAAGCACTGTTTGaaaa                                                                                                                                                                                                                       >  1:660840/1‑223 (MQ=255)
                                        ttattTTCCCACTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑TAAACACTTTTTGAAAATATTTTTAAAATATATATTtaatttaaaa                                                                                                                                                                                          >  2:312139/1‑244 (MQ=255)
                                          attTTCCCACTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGaa                                                                                                                                                                                                                         <  1:195268/218‑1 (MQ=255)
                                          attTTCCCACTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTGTTTT‑‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAa‑tt                                                                                                                                                                                      >  1:508184/1‑251 (MQ=255)
                                             ttCCCACTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGAAAatatat                                                                                                                                                                                                                  <  2:571592/222‑1 (MQ=255)
                                             ttCCCACTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCAGAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTGCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGAACTGTTTGAAAatatat                                                                                                                                                                                                                  >  1:571592/1‑222 (MQ=255)
                                                  aCTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTT‑‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTATAATAAAAA‑TTAttttttt                                                                                                                                                                              >  2:492085/1‑248 (MQ=255)
                                                   ttttATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCAATGTTTGAAATTATATTTAAAAAATATTTCTAAATTAAAAA‑TTATTTTCtt                                                                                                                                                                              >  2:382154/2‑251 (MQ=255)
                                                     ttATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTT‑‑‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGc                                                                                                                                                                          <  1:130442/251‑1 (MQ=255)
                                                       atatCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑TAAACACATTTTTAAAAAAAATTTTAAAAATATTTTTTAAATTAAAA‑TTTTTTTCTTaata                                                                                                                                                                          >  2:318418/1‑248 (MQ=255)
                                                              gTTTAATACTTCCATTAGGATAACTTTTAAATAAATCTGCTGGACTTGCAAAGAAATTCACACAAAATACAAAAGATAAAGTCATAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTATTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGc                                                                                                                                                                          <  1:517128/244‑1 (MQ=255)
                                                              gTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTGTTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTT‑‑‑‑CAAGCACTGTTTGAAAATATATGTAAAAAATATATc                                                                                                                                                                                                    >  1:640214/1‑218 (MQ=255)
                                                              gTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTATAATAAAAA‑TTATTTTTTTATGcctttctt                                                                                                                                                                   >  2:517128/1‑244 (MQ=255)
                                                              gTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑‑AA‑CACTTTTTTAAAAAAAATTTTAAAAATTTTTTTTAAATAAAAAATTAtttttttttattataataa                                                                                                                                                                  >  2:225731/1‑236 (MQ=255)
                                                                          cATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTTT‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATTTAAAATAAAAA‑TTATTTTTTTTTGTTATAATTAAAAtctgc                                                                                                                                                          >  1:71462/1‑245 (MQ=255)
                                                                                          aaaaaaaTCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑TAAACACTTTTTGGAAATATATTTTAAAAAAATTTTTAAATTAAAAA‑TTATTTTTTTATTATATAATTAAAAAAAAGAAATTTTTTTGAAAGGAtt                                                                                                                                       >  2:506671/1‑251 (MQ=255)
                                                                                               aatttgcttgatttGCAAAAACATTCACAAAAAAAAAAAAAAAAAAAGTCAAACTTAAATAAATCTTTTTCATAATCTCCTTTAAAATTTAAAAAATAA‑TTTAAAAAAAAATCATTTTTTCAATTAAAATCATTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTaaaaa                                                                                                                                  <  1:506671/239‑1 (MQ=255)
                                                                                               aaattgaaggaatttcgaaaaCATTTAAAAAAAATAAAAAAAATAAAATTAAAATAAAAAAAATTTTTTTAATAAATTCTTTATAAATTTATAAAATAA‑TTTATTATAAAATCAAATTTTATAATAAAATAATTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTaaaaa                                                                                                                                  <  1:312139/234‑1 (MQ=255)
                                                                                               aaTCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTT‑‑‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTCTTTTCTTATGCt                                                                                                                                                                         >  1:484460/1‑210 (MQ=255)
                                                                                                                     atttacaaaaaaaaaaaaaaaTAAAATAAAAATTAAAAAAATTTTTTTTATAAACTCCTTTTATATTTTTAAAATAA‑TTTATTATAAAATAAACTATTTTATTATAATAGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAatat                                                                                                            <  1:255758/236‑1 (MQ=255)
                                                                                                                                      aaaataaaatTAAAATTAAAAAAATTATTTTCATAAAATACTCTCATATTTCTAAAATAA‑TTTATTATAAAATAATCTGTTTTATTATAGTCGTTTTTTTTTTTTTTTTT‑‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTTATTATAATGATGATAg                                                                                          <  2:708420/251‑1 (MQ=255)
                                                                                                                                       aaataaaataAAAATTAAAAAAATATTTTTCAAAAATAACTTTAAAATTTATAAAATAA‑TTTATTATAAAAACAATTATTATAATAAAATTATTTTTTTTTTTTTTTTTT‑‑‑CAAACACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTTATTATAATGATGATAg                                                                                          <  2:489768/251‑1 (MQ=255)
                                                                                                                                                                tttttcataaaatatttttatatTTATAAAATAAATTTATT‑TAAAATTATCTGTTATATTATAGTTGTTTTTTTTTTTTTTTTTTT‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTTATTATAATGATGATAGTTTTTTCACTTTTAACTTTTTTAg                                                                  <  2:641428/232‑1 (MQ=255)
                                                                                                                                                                                             aataa‑tTTATTATAAAATCATCTTTTTTATTATAGTCGTTTTTTTTTTTTTTTGT‑‑‑‑CAAGTACTGTTTGAAAATATTTTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTTATTATAATGATGATAGTTTTTTCACTTTTAACTTTTTTAGTTGACATAGTTTTACTTATCAGATTTATTAc                                   <  1:492085/251‑1 (MQ=255)
                                                                                                                                                                                                                catcTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTTT‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTttttat                                                                                                     >  1:173642/1‑169 (MQ=255)
                                                                                                                                                                                                                        cTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGAAAATATCTTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTTATTATAATGATGATAGTTTTTTCACTTTTAACTTTTTTAGTTGACATAGTTTTACTTATCAGATTTATTACATTAATAAAACAAATATTTTATaaa          >  1:397214/1‑251 (MQ=255)
                                                                                                                                                                                                                        cTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTTTTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTTATTATAATGATGATAGTTTTTTCACTTTTAACTTTTTTAGTTCACATAGTTTTACTTATCAGACTTATTACATtagt                             >  1:477477/1‑230 (MQ=255)
                                                                                                                                                                                                                        cTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATGATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTTATTATAATGATGATAGTTTTTTCACTTTTAACTTTTTTAGTTGACATAGTTTTACTTATCAGATTTATTACATtaat                             <  2:477477/232‑1 (MQ=255)
                                                                                                                                                                                                                        cTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACAAGTTGACAAACGATTTTAAAAATATTTCCAAAATCACAA‑TTATTTTTTTAAGAAAAAATTAAAATAAAGAATTTTTTTTTTTTTTTTTTAAAATATATTATGAATAAAGTAATATTTATTATAATGATGATAGTTTTTTCACTTTTAAATTTTTTAGTTTACATAGTTTTATTTATTATATTTATTACATAAATAAAACAAATATTCTATaaa          >  2:673510/1‑251 (MQ=255)
                                                                                                                                                                                                                        cTATTATAGTCGTTTTTTTTTTTTTTTTT‑‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTTATTATAATGATGATAGTTTTTGCACTTTTAATTTTTTAAGTTGGCATAGTTTTACTTATCAGTTTTATTACATTAATAAAACAAATATTCTATAAAg         >  1:497499/1‑251 (MQ=255)
                                                                                                                                                                                                                           ctataGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACGGTTTGAAAAAATATTTAAAAAATATTTTTAAAATAAAAG‑TTATTTTTTTATGCTATAATTAAAATAAAGATTTTTTTTTTTTTGTTTTAAAAATATATTTTGAATGAAGTAATATTTTTTATAATGATGATAGTTTTTTAACTTTTAAATTTTTTATTTGACTTATTTTTATTTTTTAGTTTTATTAATTTAATAAAAAAAATTTTTTATAAAgtt       >  2:391415/2‑249 (MQ=255)
                                                                                                                                                                                                                                atttattttttttttttttttt‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTTATTATAATGATGATAGTTTTTTCACTTTTAACTTTTTTAGTTGACATAGTTTTACTTATCAGATTTATTACATTAATAAAACAAATATTCTATAAAGATTACTc  <  2:497499/246‑1 (MQ=255)
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                         
ATAACTAGCATTATAAAAATAAGAATTATAATAAAGTTCATTATTTTCCCACTTTATATCAAGTTTAATACTTCCATTAGGATAACTTTTAAAAAAATCTGCTGGACTTGCAAAAACATTCACACAAAATACAAAAAATAAAGTCAAAATTAAAAAAATCTTTTTCATAAACTCCTCTCATATTTCTAAAATAA‑TTTATTATAAAATCATCTGTTCTATTATAGTCGTTTTTTTTTTTTTTTTTT‑‑‑CAAGCACTGTTTGAAAATATATTTAAAAAATATATCTAAAATAAAAA‑TTATTTTCTTATGCTATAATTAAAATAAAGAATATTTTTGGAAAGGATTAAAAATATATTATGAATGAAGTAATATTTATTATAATGATGATAGTTTTTTCACTTTTAACTTTTTTAGTTGACATAGTTTTACTTATCAGATTTATTACATTAATAAAACAAATATTCTATAAAGATTACTC  >  CP028101/1228135‑1228608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑