| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP028101 | 2060542 = | 263 (1.870) | 17 (0.120) | 12/440 | 2.4 | 6.0% | coding (172/1413 nt) | C7Y58_09990 | alanine:cation symporter family protein |
| ? | CP028101 | = 2060554 | 274 (1.960) | coding (184/1413 nt) | C7Y58_09990 | alanine:cation symporter family protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTTTACTTTATAAGTTTGAGCCAAAGTATTTTCGATTAAACTTGTTGCAGCACCTAAAAGAGCAATTATCCACATCCAAAACAATGCTCCTGGGCCACCAACTACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP028101/2060758‑2060542‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACCTGTCCTCAAAGTATAAAATAACCCTGATAGTAGTAAAAGTGCAATAAGAACATAAGACCATAAAACTGTGTTGATTTGTCCAATT < CP028101/2060554‑2060391 CTTTTACTTTATAAGTTTGAGCCAAAGTATTTTCGATTAAACTTGTTGCAGCACCTAAAAGAGCAATTATCCACATCCAAAACAATGCTCCTGGGCCACCAACTACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGT > 2:75363/1‑251CTTTTACTTTATAAGTTTGAGCCAAAGTATTTTCGATTAAACTTGTTGCAGCACCTAAAAGAGCAATTATCCACATCCAAAACAATGCTCCTGGGCCACCAACTACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGT > 2:633290/1‑251 TGAGCCAAAGTATTTTCGATTAAACTTGTTGCAGCACCTAAAAGAGCAATTATCCACATCCAAAACAATGCTCCTGGGCCACCAACTACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATAT < 1:33177/251‑1 ACCTAAAAGAGCAATTATCCACATCCAAAACAATGCTCCTGGGCCACCAACTACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACCTGTCCT > 2:645514/1‑250 AATTATCCACATCCAAAACAATGCTCCTGGGCCACCAACTACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAAGCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACCTGTCCTCAAAGTATAAAAT < 1:633290/251‑1 AATTATCCACATCCAAAACAATGCTCCTGGGCCACCAACTACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACCTGTCCTCAAAGTATAAAAT < 1:75363/251‑1 AACTACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTTATAATCTTCCTTGTGCAAAACCTGTCCTCAAAGTATAAAATAACCCTGATAGTAGTAAAAGTGCAATAAGAACATAA > 2:2853/1‑251 ACTACAAGTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTGTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACCTGTCCTCAAAGTATAAAATAACCCTGATAGTAGTAAAAGTGCAATAAGAACATAAG < 1:645514/251‑1 CTACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACC < 1:651557/194‑1 CTACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACC > 2:651557/1‑194 tgggttcggagaggtttttagagacAGGTTACCTGTTCCAACGTGATAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTGTCACCATCTTTTCTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACCTGTCCTCAAAGTATAAAATAACCCTGATAGTAGTAAAAGTGCAATAAGAACATAAGAC < 1:624569/226‑1 TACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTTATAATCTTCCTTGTGCAAAACCTGTCCTCAAAGTATAAAATAACCCTGATAGTAGTAAAAGTGCAATAAGAACATAAGAC < 1:2853/251‑1 TCCTGCAAGGTTACCTGTTCTAACGTGAGAAGCAACAGCTATACAGAACGCTTTGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACCTGTCCTCAAAGTATAAAATAACCCTGATAGTAGTAAAAGTGCAATAAGAACATAAGACCATAAAACTGTGTTGATT < 1:472732/251‑1 GTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACCTGTCCTCAAAGTATAAAATAACCCTGATAGTAGTAAAAGTGCAATAAGAACATAAGACCATAAAACTGTGTTGATTTGTCCAATT > 2:328438/1‑251 GTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACCTGTCCTCAAAGTATAAAATAACCCTGATAGTAGTAAAAGTGCAATAAGAACATAAGAC > 2:624569/1‑224 GTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACC < 1:716779/159‑1 GTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTTTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACC > 2:716779/1‑159 CTTTTACTTTATAAGTTTGAGCCAAAGTATTTTCGATTAAACTTGTTGCAGCACCTAAAAGAGCAATTATCCACATCCAAAACAATGCTCCTGGGCCACCAACTACAACTGCTATTGCAACTCCTGCAAGGTTACCTGTTCCAACGTGAGAAGCAACAGCTATACAGAACGCTTGGAAACCAGTTACTTGTCCAGCAATTTTCTTTTCACCATCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP028101/2060758‑2060542‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTTCACCATCTTTAAGTGAAGAAAGTTTGCCAGTAATTAATGCAACCATATCACCTAATAATCTTCCTTGTGCAAAACCTGTCCTCAAAGTATAAAATAACCCTGATAGTAGTAAAAGTGCAATAAGAACATAAGACCATAAAACTGTGTTGATTTGTCCAATT < CP028101/2060554‑2060391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |