New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP028101	= 1017553	136 (0.970)	10 (0.080)	7/408	2.9	7.2%	coding (1848/2319 nt)	C7Y58_04965	hypothetical protein
	?	CP028101	1017608 =	133 (1.030)					coding (1903/2319 nt)	C7Y58_04965	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

GGTTTTAATAGAAAACGTATGAATCAATCCACAAAAACAGCTTATGATTTCAATGGTTTTGATTATAAAGGAATTCATAAAGAGACTAAGAAAGCCTATGATGAAAGAGGATTTAATGCAAAGTCATATAATGTATTTACAAATAGTCTCTATGATAAAGATGGATTCAATCATGAAGGAATCCATAAAGTTACAAAAAAACCTTATAATGAAAATGGTTGGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP028101/1017329‑1017553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaaaatggttgggatATAAATGGAATTAATAAAAGAAGTTTTAACAGAGATGGTTGGAATATAGAAACCAAAAGTAAATATGATTATGCTGGTTTTGACTTTGAAGGAATCCATAAAGATACTAAAAAAACTTATGATGAAAGAGGTTTTGATGTAAATTTAAACAATGTATTTACAAATAGTCCTTATGATAAAAATGGATTTAATTATGAAGGAATCCATAAAGTAACAGGTAAAGAGTATGATGA  >  CP028101/1017608‑1017840                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gggTTTAATAGAAAACGTATGAATCAATCCACAAAAACAGCTTATGATTTCAATGGTTTTGATTATAAAGGAATTCATAAAGAGACTAAGAAAGCCTATGATGAAAGAGGATTTAATGCAAAGTCATATAATGTATTCACAAATAGTCTCTATGATAAAGATAGATTCAATCATGAAGGAATCCATAAAGTTACAAAAAAACATTATAATGAAAATGGTTGGGATATAAATGGAATTAATAAAAGAAGTTT                                                                                                                                                                                                                 >  2:468791/4‑251                CGTATGAATCAATCCACAAAAACAGCTTATGATTTCAATGGTTTTGATTATAAAGGAATTCATAAAGAGACTAAGAAAGCCTATGATGAAAGAGGATTTAATGCAAAGTCATATAATGTATTTACAAATAGTCTCTATGATAAAGATGGATTCAATCATGAAGGAATCCATAAAGTTACAAAAAAACCTTATAATGAAAATGGTTGGGATATAAATGGAATTAATAAAAGAAGTTTTAACAGAGATGGTTG                                                                                                                                                                                                  >  1:305582/1‑251                                                   CAATGGTTTTGATTATAAAGGAATTCATAAAGAGACTAAGAAAGCCTATGATGAAAGAGGATTTAATGCAAAGTCATATAATGTATTTACAAATAGTCTCTATGATAAAGATGGATTCAATCATGAAGGAATCCATAAAGTTACAAAAAAACCTTATAATGAAAATGGTTGGGATATAAATGGAATTAATAAAAGAAGTTTTAACAGAGATGGTTGGAATATAGAAACCAAAAGTAAATATGATTATG                                                                                                                                                                  >  1:243875/1‑248                                                                               AAAGAGACTAAGAAAGCCTATGATGAAAGAGGATTTAATGCAAAGTCATATAATGTATTTACAAATAGTCTCTATGATAAAGATGGATTCAATCATGAAGGAATCCATAAAGTTACAAAAAAACCTTATAATGAAAATGGTTGGGATATAAATGGAATTAATAAAAGAAGTTTTAACAGAGATGGTTGGAATATAGAAACCAAAAGTAAATATGATTATGCTGGTTTTGACTTTGAAGGAATCCATAAAGA                                                                                                                                   <  2:305582/251‑1                                                                                  GAGACTAAGAAAGCCTATGATGATAGAGGATTTAATGCAAAGTCATATAATGTATTTACAAATAGTCTCTATGATAAAGATGGATTCAATCACGAAGGAATCCATAAAGTTACAAAAAAACCTTATAATGAAAATGGTTGGGATATAAATGGAATTAATAAAAGAAGTTTTAACAGAGATGGTTGGAATATAGAAACCAAAAGTAAATATGATTATGCTGGTTTTGAC                                                                                                                                                       <  1:619445/228‑1                                                                                  GAGACTAAGAAAGCCTATGATGAAAGAGGATTTAATGCAAAGTCATATAATGTATTTACAAATAGTCTCTATGATAAAGATGGATTCAATCATGAAGGAATCCATAAAGTTACAAAAAAACCTTATAATGAAAATGGTTGGGATATAAATGGAATTAATAAAAGAAGTTTTAACAGAGATGGTTGGAATATAGAAACCAAAAGTAAATATGATTATGCTGGTTTTGACTTTGAAGGAATCCATAAAGATA                                                                                                                                 >  1:415566/1‑250                                                                                  GAGACTAAGAAAGCCTATGATGAAAGAGGATTTAATGCAAAGTCATATAATGTATTTACAAATAGTCTCTATGATAAAGATGGATTCAATCATGAAGGAATCCATAAAGTTACAAAAAAACCTTATAATGAAAATGGTTGGGATATAAATGGAATTAATAAAAGAAGTTTTAACAGAGATGGTTGGAATATAGAAACCAAAAGTAAATATGATTATGCTGGTTTTGAC                                                                                                                                                       >  2:619445/1‑228                                                                                                                                     GTATTTACAAATAGTCTCTATGATAAAGATGGATTCAATCATGAAGGAATCCATAAAGTTACAAAAAAACCTTATAATGAAAATGGTTGGGATATAAATGGAATTAATAAAAGAAGTTTTAACAGAGATGGTTGGAATATAGAAACCATAAGTAAATATGATTATGCTGGTTTTGACTTTGAAGGAATCCATAAAGATACTAAACAAACTTATGATGAAAGAGGTTTTGATGTAAATTTAAACAATGTATT                                                                             >  1:620466/1‑251                                                                                                                                     GTATTTACAAATAGTCTCTATGATAAAGATGGATTCAATCATGAAGGAATCCATAAAGTTACAAAAAAACCTTATAATGAAAATGGTTGGGATATAAATGGAATTAATAAAAGAAGTTTTAACAGAGATGGTTGGAATATAGAAACCAAAAGTAAATATGATTATGCTGGTTTTGACTTTGAAGGAATCCATAAAGATACTAAAAAAACTTATGATGAAAGAGGTTTTGATGTAAATTTAAACAATGTATT                                                                             >  1:436707/1‑251                                                                                                                                                                                                                AATGAAAATGGTTGGGATATAAATGGAATTAATAAAAGAAGTTTTAACAGAGATGGTTGGAATATAGAAACCAAAAGTAAATATGATTATGCTGGTTTTGACTTTGAAGGAATCCATAAAGATACTAAAAAAACTTATGATGAAAGAGGTTTTGATGTAAATTTAAACAATGTATTTACAAATAGTCCTTATGATAAAAATGGATTTAATTATGAAGGAATCCATAAAGTAACAGGTAAAGAGTATGATGA  <  2:415566/251‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGTTTTAATAGAAAACGTATGAATCAATCCACAAAAACAGCTTATGATTTCAATGGTTTTGATTATAAAGGAATTCATAAAGAGACTAAGAAAGCCTATGATGAAAGAGGATTTAATGCAAAGTCATATAATGTATTTACAAATAGTCTCTATGATAAAGATGGATTCAATCATGAAGGAATCCATAAAGTTACAAAAAAACCTTATAATGAAAATGGTTGGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP028101/1017329‑1017553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaaaatggttgggatATAAATGGAATTAATAAAAGAAGTTTTAACAGAGATGGTTGGAATATAGAAACCAAAAGTAAATATGATTATGCTGGTTTTGACTTTGAAGGAATCCATAAAGATACTAAAAAAACTTATGATGAAAGAGGTTTTGATGTAAATTTAAACAATGTATTTACAAATAGTCCTTATGATAAAAATGGATTTAATTATGAAGGAATCCATAAAGTAACAGGTAAAGAGTATGATGA  >  CP028101/1017608‑1017840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.