New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP028101 14634 =NA (NA)6 (0.040) 6/432 3.2 NA coding (278/1482 nt) C7Y58_00080 IS1182‑like element ISFnu1 family transposase
?CP028101 15120 = NA (NA)coding (764/1482 nt) C7Y58_00080 IS1182‑like element ISFnu1 family transposase
Rejected: Coverage evenness skew score above cutoff.

TCTCACTTAATTTAAAAAGTTTTTCCACAAATTGACAAAACAATTCATAGATGATATCACTAGCCTTTGAAAGAAAGCGAGAAATAGTTGAATAACTAGGAACATTAAGCGAATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/14750‑14634
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttaTGAGAATGAAGGAAGATTACATGCGCAATGGACAATTAAAACCAGGGTATAATCTTCAGATTGGTGTAATTAGCGAATATATTGCTTCCTATGAAATTTTCCATAATCCAGCAGATACAAAAACTTTAATTCCATTTCTTGAAAAAACAAAATCTCAAAATATAGAAATCAAGAATGTAGTAGCAGATGCAGGATATGAAAGTTTTCCTAATTATGAATAT  >  CP028101/15120‑15340
                                                                                                                                                                                                                                                                                                                                                  
TCTCACTTAATTTAAAAAGTTTTTCCACAAATTGACAAAACAATTCATAGATGATATCACTAGCCTTTGAAAGAAAGCGAGAAATAGTTGAATAACTAGGAACATTAAGCGAATTTATGAGAATGAAGGAAGATTACATGCGCAATGGACAATTAAAACCAGGGTATAATCTTCAGATTGGTGTAATTAGCGAATATCTTGCTTCCTATGATATTTTCCATAATCCAGCAGATACAAAAACTTTAATTCCA                                                                                         >  1:515419/1‑251
           TTAAAAAGTTTTTCCACAAATTGACAAAACAATTCATAGATGATATCACTAGCCTTTGAAAGAAAGCGAGAAATAGTTGAATAACTAGGAACATTAAGCGAATTTATGAGAATGAAGGAAGATTACATGCGCAATGGACAATTAAAACCAGGGTATAATCTTCAGATTGGTGTAATTAGCGAATATATTGCTTCCTATGATATTTTCCATAATCCAGCAGATACAAAAACTTTAATTCCATTTCTTGAAAA                                                                              >  2:698222/1‑251
                                        CAATTCATAGATGATATCACTAGCCTTTGAAAGAAAGCGAGAAATAGTTGAATAACTAGGAACATTAAGCGAATTTATGAGAATGAAGGAAGATTACATGCGCAATGGACAATTAAAACCAGGGTATAATCTTCAAATTGGTGTAATTAGCGAATATATTGCTTCCTATGAAATTTTCCATAATCCAGCAGATACAAAAACTTTAATTCCATTTCTTGAAAAAACAAAATCTCAAAATATAGAAATCAAGA                                                 >  1:46742/1‑251
                                              ATAGATGATATCACTAGCCTTTGAAAGAAAGCGAGAAATAGTTGAATAACTAGGAACATTAAGCGAATTTATGAGAATGAAGTAAGATTACATGCGCAATGGACAATTAAAACCAGGGTATAATCTTCAGATTGGTGTAATTAGCGAATATATTGCTTCCTATGATATTTTCCATAATCCAGCAGATACAAAAACTTTAATTCCATTTCTTGAAAAAACAAAATCTCAAAATATAGAAATCAAGAATGTAG                                           <  2:515419/251‑1
                                                                     AAAGAAAGCGAGAAATAGTTGAATAACTAGGAACATTAAGCGAATTTATGAGAATGAAGGAAGATTACATGCGCAATGGACAATTAAAACCAGGGTATAATCTTCAGATTGGTGTAATTAGCGAATATATTGCTTCCTATGATATTTTCCATAATCCAGCAGATACAAAAACTTTAATTCCATTTCTTGAAAAAACAAAATCTCAAAATATAGAAATCAAGAATGTAGTAGCAGATGCAGGACATGAAAG                     <  1:698222/250‑1
                                                                                       TTGAATAACTAGGAACATTAAGCGAATTTATGAGAATGAAGGAAGATTACATGCGCAATGGACAATTAAAACCAGGGTATAATCTTCAAATTGGTGTAATTAGCGAATATATTGCTTCCTATGAAATTTTCCATAATCCAGCAGATACAAAAACTTTAATTCCATTTCTTGAAAAAACAAAATCTCAAAATATAGAAATCAAGAATGTAGTAGCAGATGCAGGATATGAAAGTTTTCCTAATTATGAATAT  <  2:46742/251‑1
                                                                                                                                                                                                                                                                                                                                                  
TCTCACTTAATTTAAAAAGTTTTTCCACAAATTGACAAAACAATTCATAGATGATATCACTAGCCTTTGAAAGAAAGCGAGAAATAGTTGAATAACTAGGAACATTAAGCGAATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/14750‑14634
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttaTGAGAATGAAGGAAGATTACATGCGCAATGGACAATTAAAACCAGGGTATAATCTTCAGATTGGTGTAATTAGCGAATATATTGCTTCCTATGAAATTTTCCATAATCCAGCAGATACAAAAACTTTAATTCCATTTCTTGAAAAAACAAAATCTCAAAATATAGAAATCAAGAATGTAGTAGCAGATGCAGGATATGAAAGTTTTCCTAATTATGAATAT  >  CP028101/15120‑15340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.