New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP028101	= 1628697	129 (0.920)	6 (0.040)	4/434	3.6	7.2%	coding (628/744 nt)	C7Y58_07860	hypothetical protein
	?	CP028101	= 1628907	27 (0.200)					coding (418/744 nt)	C7Y58_07860	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTTTTCACTTCTTTTATTAGATAAAAATTCAACTAAACTTTGCCACACAAAATCTGTATCAATATATACTCCCATCTGTGATAGATTTGGATTATAAATAAATTTATATAGAGAAGGAGAATAATACCTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATGGGTATATACACCATTTTCAGTAAAAAATAAATGTATTAATTTCTCTCCTATAAAAAGTATTTTATGAATATTTTT  >  CP028101/1628676‑1629126                                                                                                                                                                                                                                        |                                                                                                                                                                                                                            cTTTTTCACTTCTTTTATTAGATAAAAATTCAACTAAACTTTGCCACACAAAATCTGTATCAATATATACTCCCATCTGTGATAGATTTGGATTATAAATAAATTTATATAGAGAAGGAGAATAATACCTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATaataaa                                                                                                                                                                                                          >  2:576483/1‑251 (MQ=255)  tttttCACTTCTTTTATTAGATAAAAATTCAACTAAACTTTGCCACACAAAATCTGTATCAATATATACTCCCATCTGTGATAGATTTGGATTATAAATAAATTTATATAGAGAAGGAGAATAATACCTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATaataaat                                                                                                                                                                                                         <  1:172309/251‑1 (MQ=255)                                 aCTAAACTTTGCCACACAAAATCTGTATCAATATATACTCCCATCTGTGATAGATTTGGATTATAAATAAATTTATATAGAGAAGGAGAATAATACCTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAat                                                                                                                                                                          <  2:266867/251‑1 (MQ=255)                                        tttGCCACACAAAATCTGTATCAATATATACTCCCATCTGTGATAGATTTGGATTATAAATAAATTTATATAGAGAAGGAGAATAATACCTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAAt                                                                                                                                                                   <  1:109727/251‑1 (MQ=255)                                                                 atataCTCCCATCTGTGATAGATTTGGATTATAAATAAATTTATATAGAGAAGGAGAATAATACCTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAAttt                                                                                                                                          >  2:270991/1‑251 (MQ=255)                                                                   ataCTCCCATCTGTGATAGATTTGGATTATAAATAAATTTATATAGAGAAGGAGAATAATACCTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAAttt                                                                                                                                          >  2:207340/1‑249 (MQ=255)                                                                                                                         aataatACCTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATaataaat                                                                                                                                                                                                         <  2:506709/132‑1 (MQ=255)                                                                                                                         aataatACCTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATaataaat                                                                                                                                                                                                         >  1:506709/1‑132 (MQ=255)                                                                                                                                ccTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAg                                                                                                                         <  1:324906/205‑1 (MQ=255)                                                                                                                                ccTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAg                                                                                                                         >  2:324906/1‑205 (MQ=255)                                                                                                                                        cTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATGGGTATATac                                                                    <  2:233930/250‑1 (MQ=255)                                                                                                                                        cTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATGGCTATATac                                                                    <  1:207340/250‑1 (MQ=255)                                                                                                                                        cTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGACATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATGGGTATATac                                                                    <  1:272514/250‑1 (MQ=255)                                                                                                                                        cTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGACTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATGGGTATATac                                                                    <  1:576483/250‑1 (MQ=255)                                                                                                                                        cTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGACTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTACTATAAGATAATAGATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATGGGTATATac                                                                    <  1:640521/250‑1 (MQ=255)                                                                                                                                         tttttCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATGGGTATATacac                                                                  <  1:270991/251‑1 (MQ=255)                                                                                                                                                ttattaCATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTTATATAATATCATCTTTATTGATATTAAGATTTATTCATTTTTTTCAATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATGGGTATATACACCATTTTc                                                           <  1:548685/251‑1 (MQ=255)                                                                                                                                                  attaCATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATggg                                                                           >  1:372302/1‑233 (MQ=255)                                                                                                                                                  attaCATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATgga                                                                           <  2:372302/233‑2 (MQ=255)                                                                                                                                                          cACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAg                                                                                                                                                                                                                  >  1:53093/1‑90 (MQ=255)                                                                                                                                                          cACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAg                                                                                                                                                                                                                  <  2:53093/90‑1 (MQ=255)                                                                                                                                                          cACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATg                                                                             >  2:206998/1‑223 (MQ=255)                                                                                                                                                          cACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATg                                                                             <  1:206998/223‑1 (MQ=255)                                                                                                                                                          cACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCATTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTGATTTTTTATATCAAAATGGGTATATACACCATTTTCAGTAAAaaat                                                 >  1:635788/1‑251 (MQ=255)                                                                                                                                                                                                         tcTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATGGGTATATACACCATTTTCAGTAAAAAATAAATGTATTAATTTCTCTCCTATAAAAAGTATTTTATGAATAttttt  >  1:311266/1‑251 (MQ=255)                                                                                                                                                                                                          cTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAg                                                                                                                                                <  1:640047/108‑1 (MQ=255)                                                                                                                                                                                                          cTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAg                                                                                                                                                >  2:640047/1‑108 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                            CTTTTTCACTTCTTTTATTAGATAAAAATTCAACTAAACTTTGCCACACAAAATCTGTATCAATATATACTCCCATCTGTGATAGATTTGGATTATAAATAAATTTATATAGAGAAGGAGAATAATACCTTTTAGCTTTTTCATTATTACATTCACCAATATATTCTATTAAAAGGATTGGCTCATTTAATATAATATCATCTTTATTGATATTAAGATTTATTAATTTTTTTCTATTATAAGATAATAAATAGTCCCAATCACTTCTAAATCTACTGTAAATATTAAATTTCTCCCCATCTTTAAAAGTAATTTCTTTTTTATATTCAAAGTTAGTCAACTTTCTCAAATTTTCTTCATTTTTTATATCAAAATGGGTATATACACCATTTTCAGTAAAAAATAAATGTATTAATTTCTCTCCTATAAAAAGTATTTTATGAATATTTTT  >  CP028101/1628676‑1629126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.