mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 294 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,757,453 | 0 | C | T | 50.0% | 36.2 / 34.8 | 64 | intergenic (+115095/‑24272) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| * | 1 | 1,154,537 | 0 | T | G | 49.5% | 141.0 / 23.0 | 93 | intergenic (+15407/+238774) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 2 | 118 | 0 | T | C | 48.1% | 67.1 / 19.4 | 54 | intergenic (–/–) | –/– | –/– |
| * | 1 | 1,939,088 | 0 | A | C | 47.9% | 183.7 / 45.1 | 119 | intergenic (‑39345/–) | unknown/– | tRNA‑Met‑CAT/– |
| * | 1 | 1,520,748 | 0 | A | C | 46.8% | 168.5 / 37.4 | 109 | intergenic (‑4626/‑45316) | unknown/unknown | tRNA‑Arg‑CCG/tRNA‑Asn‑GTT |
| * | 1 | 1,555,360 | 0 | A | C | 45.1% | 140.7 / 29.6 | 82 | intergenic (‑39238/‑10704) | unknown/unknown | tRNA‑Arg‑CCG/tRNA‑Asn‑GTT |
| * | 1 | 321,786 | 0 | A | C | 44.7% | 123.0 / 16.7 | 76 | intergenic (‑37157/‑41541) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA |
| * | 1 | 1,154,540 | 0 | T | G | 43.0% | 168.1 / 10.2 | 93 | intergenic (+15410/+238771) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 114,884 | 0 | A | C | 42.7% | 120.9 / 31.1 | 90 | intergenic (+110277/+15621) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| * | 1 | 1,405,375 | 0 | G | A | 42.6% | 82.1 / 20.5 | 54 | intergenic (‑11988/+7930) | unknown/unknown | tRNA‑Val‑GAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| * | 1 | 421,860 | 0 | T | G | 41.1% | 295.4 / 34.8 | 147 | intergenic (+58443/‑150159) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| * | 1 | 1,785,899 | 0 | T | G | 40.2% | 235.5 / 41.8 | 122 | intergenic (+3999/+49485) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| * | 1 | 1,405,369 | 0 | C | T | 40.0% | 79.7 / 23.1 | 55 | intergenic (‑11982/+7936) | unknown/unknown | tRNA‑Val‑GAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| * | 1 | 1,785,914 | 0 | T | G | 38.5% | 249.1 / 27.7 | 118 | intergenic (+4014/+49470) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| * | 1 | 1,129,501 | 0 | T | C | 38.3% | 107.2 / 15.5 | 60 | intergenic (+14011/‑9553) | unknown/unknown | tRNA‑Gln‑TTG/tRNA‑Met‑CAT |
| * | 1 | 1,287,522 | 0 | A | C | 37.8% | 153.3 / 16.8 | 75 | intergenic (+148392/+105789) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,873,479 | 0 | A | C | 37.8% | 185.4 / 19.5 | 98 | intergenic (‑37816/+10150) | unknown/unknown | tRNA‑Lys‑TTT/tRNA‑Ser‑TGA |
| * | 1 | 466,561 | 0 | T | G | 37.5% | 361.3 / 11.9 | 160 | intergenic (+103144/‑105458) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| * | 1 | 560,529 | 0 | T | G | 37.5% | 228.0 / 18.0 | 96 | intergenic (+197112/‑11490) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| * | 1 | 1,060,697 | 0 | A | C | 37.1% | 235.1 / 14.7 | 105 | intergenic (‑135980/‑54411) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT |
| Marginal new junction evidence (lowest skew 10 of 42 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | = 132349 | NA (NA) | 8 (0.070) | 8/430 | 6.8 | NA | noncoding (1179/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 132354 | NA (NA) | noncoding (1174/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | 389373 = | 99 (0.880) | 7 (0.070) | 6/420 | 7.5 | 6.3% | intergenic (+25956/‑182646) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| ? | 1 | 389467 = | 115 (1.080) | intergenic (+26050/‑182552) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA | |||||
| * | ? | 1 | 1282705 = | 94 (0.830) | 5 (0.050) | 5/428 | 8.0 | 5.2% | intergenic (+143575/+110606) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| ? | 1 | 1282804 = | 91 (0.840) | intergenic (+143674/+110507) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC | |||||
| * | ? | 1 | 235391 = | 151 (1.330) | 5 (0.050) | 5/426 | 8.0 | 3.3% | intergenic (‑21507/+44292) | unknown/unknown | tRNA‑Ser‑GCT/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | 235618 = | 150 (1.390) | intergenic (‑21734/+44065) | unknown/unknown | tRNA‑Ser‑GCT/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | = 515551 | 163 (1.440) | 8 (0.070) | 5/436 | 8.1 | 5.2% | intergenic (+152134/‑56468) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| ? | 1 | = 516037 | 132 (1.190) | intergenic (+152620/‑55982) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA | |||||
| * | ? | 1 | = 133177 | NA (NA) | 7 (0.060) | 5/440 | 8.2 | NA | noncoding (351/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 133314 | NA (NA) | noncoding (214/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | 1786208 = | 120 (1.060) | 4 (0.040) | 4/424 | 8.5 | 3.6% | intergenic (+4308/+49176) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| ? | 1 | 1786307 = | 102 (0.950) | intergenic (+4407/+49077) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT | |||||
| * | ? | 1 | 94733 = | 131 (1.160) | 5 (0.050) | 4/438 | 8.6 | 3.6% | intergenic (+90126/+35772) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | 95111 = | 138 (1.240) | intergenic (+90504/+35394) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | = 1166874 | 127 (1.120) | 3 (0.030) | 3/402 | 8.8 | 2.6% | intergenic (+27744/+226437) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| ? | 1 | = 1166924 | 112 (1.100) | intergenic (+27794/+226387) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC | |||||
| * | ? | 1 | = 132241 | NA (NA) | 3 (0.030) | 3/412 | 8.9 | NA | noncoding (1287/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 132346 | NA (NA) | noncoding (1182/3023 nt) | unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||