| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,405,375 | 0 | G | A | 42.6% | 82.1 / 20.5 | 54 | intergenic (‑11988/+7930) | unknown/unknown | tRNA‑Val‑GAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base G (29/2); new base A (0/23); total (29/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.76e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCAAAAATTGCCACGGAAAAAGAATCCGGTCAGATTATGGCAGATGTTATTTGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGAAGGTGTTTTTAATATTCAACCGACGCCTCCGGCAGAAT > 1/1405157‑1405601 | gaaaaaatgcccACGGAAAAAGAACCCGGTCAGATTATGGCAGTTTTTTTTTGGC‑CCAGTGAATTCCCTGATTTTTTAAATATAAAAGAACCCGGCATGCTAGAATCTTATATTCCGCCCGAAGAAAAAAATATCATTAACCCGATCCCCGTTTTCGACGTTTCTTTTC‑CGCCAATCCGCTTAGGCACATTAGGTATCGCCTACAACCCCCGTTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGata < 1:101095/240‑1 (MQ=255) cAAAAATTGCCACGGAAAAAGAATCCGGTCAGATTATGGCAGATGTTATTTGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAGCCGCCGGCACAATGGGCGGatat < 1:221338/250‑1 (MQ=255) aaaaaTTGCCACGGAAAAAGAATCCGGTCAGATTATGGCAGATGTTATTTGGA‑CCAGTGAAGTCCCTGCCTTCTTCAATATAAAAGAACCCGGCATGCAAGAAACTTATATTCCCCCCGAAGTAAAAAATATCATTAACCCGATCCCCGTTTTCGGCGTTTTTTTTC‑CGCCGATCCGCTTAGGCACATTAGGTACCGCCTACAACCCCCGTTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGATATTc < 1:133018/251‑1 (MQ=255) aaaaaTTGCCACGAAAAAAAAACCGGGTCAGATTTGGGCAGTTGTTATTTGGA‑CCGGTAAAGTCCCTGATTTCTTAAATAAAAAAAAACCCGGCTTGCTAAAAATTTATTTTCCGCCCGAAGTAAAAAATATCATTAACCCGATCCCCGTTTTCGCCGGTTTTTTTA‑CGCCGATCCGTTTAGCCACATTAGGTATCGCCTAAAACCCCCGTTTTGTAAAAAAAAAACCGCCGGCACAATGGGCGGATATTc < 1:294375/251‑1 (MQ=255) gAAAAAGAATCCGGTCAGATTATGGCAGATGTTATTTGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAAtt > 1:515536/1‑251 (MQ=255) aaaaaaaaccgggTCAGATTATGGAAGATTTTATTTGGA‑CCAGTAAAGTCCCTGCCTTCTTCAATATAAAAGAACCCGGCATGCTAAAATTTTATTTTCCGCCCGAAGAAAAAAATATCATAAACCCGTTCCCCGATTTCGACGGTTTTTTTA‑CGCGGAGACGCTTAGGCAATTTAGGTTTCCCTTACACCCCCCGTTTTGTAAAAAAAAAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAAttt < 1:804294/240‑1 (MQ=255) ggTCAGATTATGGCAGATGTTATTTGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAAttt > 1:144638/1‑240 (MQ=255) gATTATGGCAGATGTTATTTGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTa > 1:146997/1‑251 (MQ=255) gATTATGGCAGATGTTATTTGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTa > 1:216074/1‑251 (MQ=255) gATTATGGCAGATGTTATTTGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTa > 1:871829/1‑251 (MQ=255) gATTATGGCAGATGTTATTTGGA‑CCAGGGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTa > 1:622549/1‑251 (MQ=255) tGGCAGATGTTATTTGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGc > 1:687789/1‑250 (MQ=255) taTGTTATTGGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATAAAAGAACCCGGCATGCTAGAAACTTATATTCCGCCGGAAGTAAAAAATATCATTAACCCGATCCCCGATTCCGCCGGTTTTTTTC‑CGCCGATACGCTTGGCCACATTAGGTATCGCCAACACCCCCCGTTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAAccc < 1:737819/250‑1 (MQ=255) aTGTTATTTGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAAcc > 1:345033/1‑249 (MQ=255) aTGTTATTTGGA‑CCAGTGAAGCCCCTGACTTTTTAAATATGAAAGAAACCGGCATGCTAGAAACTTATATTCCGCCCGAAGTAAAAAATATCATTAACCCGATCCCCGATTTCGCCGGTTCTTTTA‑CGCCAATCCGCTTAGGCACATTAGGTACCGCCTACACCCCCCGTTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAAccc < 1:245044/250‑1 (MQ=255) aTGTTA‑TTGGACCCAGTGAAGCCCCTGCCTTCTTCAATATAAAAAAACCCGGCATGCTAGAAATTTATTTTTCGCCCGAAGTAAAAAATATCATTAATCCGATCCCCGATTTCGGCGGTTTTTTTC‑CGCCGATACGTTTAGCCACATTAGGTACCGCCTACAACCCCCGTTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAAccc < 1:222280/250‑1 (MQ=255) aTTTGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAAccc > 1:898528/1‑245 (MQ=255) gTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGccc > 1:729261/1‑240 (MQ=255) gTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTa > 1:86255/1‑250 (MQ=255) aaaGTCCCTGACTTTTTAAATAAAAAAGAACCCGGCTTGCAAAAAACTTATATTTCGCCCGAAGAAAAAAATATCATTAATCCGATCCCCGATTTCGACGGTTTTTTTC‑CGCCGAACCGCTAGGGCACATAAGGTACCGCCAACACCCCCCGCTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACaa < 1:762741/250‑1 (MQ=255) aGTCCCTGTCTTCTTAAATATGAAAGAACCCGGCATGATAGAAATTTATTTTTCGCCCGAAGTAAAAAATATCATTAATCCGATCCCCGTTTTCGACGGTTTTTTTC‑CGCCGATACGCTTAGGCACATTAGGTATGGCCTACAACCCCCGTTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGccc < 1:685829/236‑1 (MQ=255) gTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTAc > 1:998960/1‑194 (MQ=255) aaTATAAAAGAACCCGGCATGCTAAAATCTTATTTTCCCCCCGAAGAAAAAAATATCATTATCCCGTTCCCCTATTTGGCCGTTTTTTTTC‑CGCCAATCCGTTTAGGCACATTAGGTTCCCCCTCCAACCCCCGTTTTGTAAAAAAAAAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAAtt < 1:528036/251‑1 (MQ=255) atatGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAAc > 1:876856/1‑224 (MQ=255) cctaaaaaCTTATTTTCCCCCCAAAGTAAAAAATATCATTAATCCGATCCCCTATTTCGACGGTTTTTTTC‑CGCCGATACGCTAAGCCACATTGGGTACCGCCTACACCACCCGTTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGc < 1:887243/246‑1 (MQ=255) cTAGAAGCTTATATTCCCCCAGAAGTAGAAAATATCATTAATCCAGTTCCCTATTTGGGCGGTTTTTTGA‑CGCGGATGCGATTAGGCAAATTAGTTATCGCCTACAACACCCGTTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGc < 1:705604/250‑1 (MQ=255) aaCTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCa > 1:414369/1‑251 (MQ=255) tttattttccccccGAAGTAAAAAATATCATTAACCCGTTCCCCGATTTCGAGGTTTTTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACACCCCCCGTTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGata < 1:992580/133‑1 (MQ=255) gTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAAttt > 1:966945/1‑251 (MQ=255) tCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTc > 1:716817/1‑126 (MQ=255) tCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCaa > 1:192092/1‑251 (MQ=255) ccgttttccgacgtttttttACCGCCGATACGCTAGGGCACTTTAGATATCGCCTACACCCCCCGTTTTGAAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGa < 1:990783/235‑1 (MQ=255) cgattccgccgtttCTTTTC‑CGCCGATCCGCTTAGACACATTGGTTACCGCCACCACCCCCCGTTTTGAAAAAAAACAGCCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATc < 1:96935/239‑1 (MQ=255) catttccgccGGTTTTTTTC‑CGCCGACACCCTTAGGCACATTAGGTATCCCCTACACCACCCGTTTTATGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATc < 1:602066/242‑1 (MQ=255) cGATTTCGACGTTTCTTTTA‑CGCCGATACTCTTAGCCACATTGGGTCGCGCTTACACCCCCCGCTTTGAAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATc < 1:528563/251‑1 (MQ=255) gaaatgtgtaaaagagacagcGCTGAGGCAAATTAGGTATCCCCAACAACACCCGTTTTGAAAAAAAAAAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGa < 1:4840/230‑1 (MQ=255) gTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGAAGgt > 1:944790/1‑251 (MQ=255) gTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGAAGgt > 1:579080/1‑251 (MQ=255) tttttA‑CGCCGATCCGCTAAGGCACTTTAGGTATCGCCTACACCCCCCGTTTTGAAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGc < 1:646268/185‑1 (MQ=255) ccgctattactgtgagactcaTTAGGAATCCCCTACAACCCCCGTTTGGAAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGAAGGTGTTTTTaa < 1:441055/232‑1 (MQ=255) ccGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATcc > 1:125157/1‑146 (MQ=255) ccGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATc > 1:634657/1‑229 (MQ=255) aCGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTa > 1:474929/1‑218 (MQ=255) aCGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATc > 1:231321/1‑224 (MQ=255) tgaataagagaaagaGGTATCGCCTACAACCCCCGTTTTGTAAAAAAAAAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGAAGGTGTTTTTAATATTCAAc < 1:728144/236‑1 (MQ=255) cGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCgg > 1:308255/1‑142 (MQ=255) cGCTTAGGCACATTAGGTACCGCCTACAACCCCCGTTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAAc < 1:322590/126‑1 (MQ=255) cTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTg > 1:144808/1‑196 (MQ=255) gCACATTAGGTACCGCCTACAACCCCCGTTTTGTAAAAAAAAAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGAAGGTGTTTTTAATATTCAACCGACGcc < 1:179515/250‑1 (MQ=255) acaTTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGAAGGTGTTTTTAATATTCAACCGACGCCTc > 1:976786/1‑250 (MQ=255) caTTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGAAGGTGTTTTTAATATTCAACCGACGCCTCCg > 1:269817/1‑251 (MQ=255) ggTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGAAGGTGTTTTTAATATTCAACCGACGCCTCCGGCAGa > 1:103070/1‑251 (MQ=255) taccgcctccaccccccGTTTTGTAAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGAAGGTGTTTTTAATATTCAACCGACGCCTCCGGCAGAat < 1:341218/237‑1 (MQ=255) gCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAAtt > 1:994644/1‑175 (MQ=255) | GCAAAAATTGCCACGGAAAAAGAATCCGGTCAGATTATGGCAGATGTTATTTGGA‑CCAGTGAAGTCCCTGACTTCTTCAATATGAAAGAAACCGGCATGCTAGAAACTTATATTTCGCCCGAAGTAGAAAATATCATTAATCCGATTCCCGATTTCGACGGTTCTTTTA‑CGCCGATACGCTTAGGCACATTAGGTATCGCCTACAACACCCGCTTTGTGAAAAAAGAACCGCCGGCACAATGGGCGGATATTCTTACTCCGCAATTTAAAGGCGCATTCGGTATTGCCAACCCTGCCCTAAACATTTACAATAATCCGGTGAATAAATTCGTGTTTAATTTCATTGGGCTATCCAATCAGTTGAACGTCAATTTGTCTGCGCAAGGTGTCACTATTGATCATTGTGAAGGTGTTTTTAATATTCAACCGACGCCTCCGGCAGAAT > 1/1405157‑1405601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |