#=GENOME_DIFF	1.0
#=CREATED	12:28:01 20 Jan 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa31S.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/AA-31R-unknown_S8_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/fq31R_vs_gbk31S
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa31S.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/AA-31R-unknown_S8_L001_R1_001.fastq.gz
#=CONVERTED-BASES	243808987
#=CONVERTED-READS	1088358
#=INPUT-BASES	243843952
#=INPUT-READS	1089357
#=MAPPED-BASES	239385439
#=MAPPED-READS	1070223
SNP	1	146	1	1029359	C
DEL	2	327	1	1143909	5	repeat_length=5	repeat_new_copies=3	repeat_ref_copies=4	repeat_seq=CACCT
RA	3	.	1	1787	0	A	G	bias_e_value=1.68261e-05	bias_p_value=8.00209e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.2	fisher_strand_p_value=2.67174e-13	frequency=2.742e-01	ks_quality_p_value=1	major_base=A	major_cov=29/61	major_frequency=7.258e-01	minor_base=G	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.742e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=29/61	total_cov=65/61
RA	4	.	1	25260	0	G	A	bias_e_value=1.70325e-11	bias_p_value=8.1002e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.3	fisher_strand_p_value=1.83503e-19	frequency=3.704e-01	ks_quality_p_value=1	major_base=G	major_cov=62/23	major_frequency=6.296e-01	minor_base=A	minor_cov=0/50	new_cov=0/50	polymorphism_frequency=3.704e-01	polymorphism_score=53.7	prediction=polymorphism	ref_cov=62/23	total_cov=62/73
RA	5	.	1	25272	0	T	C	bias_e_value=0.499895	bias_p_value=2.37738e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.9	fisher_strand_p_value=1.23774e-08	frequency=2.266e-01	ks_quality_p_value=1	major_base=T	major_cov=53/46	major_frequency=7.734e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.266e-01	polymorphism_score=23.4	prediction=polymorphism	ref_cov=53/46	total_cov=53/75
RA	6	.	1	25290	0	C	T	bias_e_value=0.00990972	bias_p_value=4.71281e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.9	fisher_strand_p_value=2.2215e-10	frequency=2.605e-01	ks_quality_p_value=0.90962	major_base=C	major_cov=53/35	major_frequency=7.395e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.605e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=53/35	total_cov=53/68
RA	7	.	1	25294	0	G	A	bias_e_value=0.0959263	bias_p_value=4.56201e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.8	fisher_strand_p_value=2.17811e-09	frequency=2.397e-01	ks_quality_p_value=1	major_base=G	major_cov=53/39	major_frequency=7.603e-01	minor_base=A	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.397e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=53/39	total_cov=53/69
RA	8	.	1	25298	0	T	G	bias_e_value=0.000434528	bias_p_value=2.0665e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.9	fisher_strand_p_value=7.77461e-12	frequency=2.927e-01	ks_quality_p_value=1	major_base=T	major_cov=53/34	major_frequency=7.073e-01	minor_base=G	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.927e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=53/34	total_cov=53/70
RA	9	.	1	25334	0	G	T	bias_e_value=8.83402e-17	bias_p_value=4.20123e-23	consensus_reject=FREQUENCY_CUTOFF	consensus_score=357.8	fisher_strand_p_value=7.47812e-25	frequency=2.992e-01	ks_quality_p_value=0.993299	major_base=G	major_cov=8/81	major_frequency=7.008e-01	minor_base=T	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.992e-01	polymorphism_score=32.7	prediction=polymorphism	ref_cov=8/81	total_cov=46/81
RA	10	.	1	30873	0	T	A	bias_e_value=0.000517125	bias_p_value=2.45931e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.9	fisher_strand_p_value=9.31582e-12	frequency=2.874e-01	ks_quality_p_value=1	major_base=T	major_cov=15/47	major_frequency=7.126e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.874e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=15/47	total_cov=40/47
RA	11	.	1	30893	0	G	A	bias_e_value=0.000572864	bias_p_value=2.72439e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.2	fisher_strand_p_value=1.03617e-11	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=17/48	major_frequency=7.143e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.857e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=17/48	total_cov=43/48
RA	12	.	1	84828	0	A	C	bias_e_value=7.33625e-11	bias_p_value=3.48893e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=371.1	fisher_strand_p_value=8.1809e-19	frequency=2.377e-01	ks_quality_p_value=1	major_base=A	major_cov=81/12	major_frequency=7.623e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.377e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=81/12	total_cov=81/42
RA	13	.	1	84843	0	G	T	bias_e_value=2.44712e-10	bias_p_value=1.16379e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=360.2	fisher_strand_p_value=2.81018e-18	frequency=2.302e-01	ks_quality_p_value=1	major_base=G	major_cov=83/14	major_frequency=7.698e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.302e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=83/14	total_cov=83/43
RA	14	.	1	108437	0	C	A	bias_e_value=1.86174e-12	bias_p_value=8.85398e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=347.5	fisher_strand_p_value=1.90795e-20	frequency=2.979e-01	ks_quality_p_value=1	major_base=C	major_cov=78/21	major_frequency=7.021e-01	minor_base=A	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=2.979e-01	polymorphism_score=48.7	prediction=polymorphism	ref_cov=78/21	total_cov=78/64
RA	15	.	1	108450	0	A	C	bias_e_value=1.44228e-15	bias_p_value=6.85909e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.8	fisher_strand_p_value=1.27694e-23	frequency=3.643e-01	ks_quality_p_value=1	major_base=A	major_cov=69/13	major_frequency=6.357e-01	minor_base=C	minor_cov=0/47	new_cov=0/47	polymorphism_frequency=3.643e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=69/13	total_cov=69/61
RA	16	.	1	114747	0	A	C	bias_e_value=2.8266e-06	bias_p_value=1.34426e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=261.5	fisher_strand_p_value=4.22797e-14	frequency=2.435e-01	ks_quality_p_value=1	major_base=A	major_cov=16/71	major_frequency=7.565e-01	minor_base=C	minor_cov=27/1	new_cov=27/1	polymorphism_frequency=2.435e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=16/71	total_cov=43/72
RA	17	.	1	114761	0	G	A	bias_e_value=1808730	bias_p_value=0.860187	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.8	fisher_strand_p_value=0.520222	frequency=2.672e-01	ks_quality_p_value=1	major_base=G	major_cov=34/51	major_frequency=7.328e-01	minor_base=A	minor_cov=10/21	new_cov=10/21	polymorphism_frequency=2.672e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=34/51	total_cov=44/72
RA	18	.	1	114765	0	T	A	bias_e_value=3.28259e-09	bias_p_value=1.56112e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.9	fisher_strand_p_value=4.02863e-17	frequency=2.768e-01	ks_quality_p_value=1	major_base=T	major_cov=14/67	major_frequency=7.232e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.768e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=14/67	total_cov=45/72
RA	19	.	1	114773	0	G	A	bias_e_value=106.719	bias_p_value=5.07526e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.5	fisher_strand_p_value=3.76209e-06	frequency=2.301e-01	ks_quality_p_value=1	major_base=G	major_cov=22/65	major_frequency=7.699e-01	minor_base=A	minor_cov=20/6	new_cov=20/6	polymorphism_frequency=2.301e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=22/65	total_cov=42/73
RA	20	.	1	114813	0	G	C	bias_e_value=485.873	bias_p_value=0.000231069	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.2	fisher_strand_p_value=1.95083e-05	frequency=2.062e-01	ks_quality_p_value=1	major_base=G	major_cov=24/53	major_frequency=7.938e-01	minor_base=C	minor_cov=17/3	new_cov=17/3	polymorphism_frequency=2.062e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=24/53	total_cov=42/56
RA	21	.	1	114843	0	A	C	bias_e_value=0.0310942	bias_p_value=1.47876e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.3	fisher_strand_p_value=6.68329e-10	frequency=3.200e-01	ks_quality_p_value=1	major_base=A	major_cov=45/23	major_frequency=6.800e-01	minor_base=C	minor_cov=1/31	new_cov=1/31	polymorphism_frequency=3.200e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=45/23	total_cov=47/54
RA	22	.	1	114881	0	T	C	bias_e_value=3.83707e-05	bias_p_value=1.82481e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.7	fisher_strand_p_value=6.27135e-13	frequency=3.118e-01	ks_quality_p_value=1	major_base=T	major_cov=48/16	major_frequency=6.882e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.118e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=48/16	total_cov=48/45
RA	23	.	1	114884	0	A	C	bias_e_value=3.79009	bias_p_value=1.80247e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.9	fisher_strand_p_value=1.05634e-07	frequency=4.270e-01	ks_quality_p_value=1	major_base=A	major_cov=40/11	major_frequency=5.730e-01	minor_base=C	minor_cov=8/30	new_cov=8/30	polymorphism_frequency=4.270e-01	polymorphism_score=31.1	prediction=polymorphism	ref_cov=40/11	total_cov=48/42
RA	24	.	1	151565	0	C	A	bias_e_value=3.24911e-10	bias_p_value=1.54519e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=375.7	fisher_strand_p_value=3.75751e-18	frequency=2.239e-01	ks_quality_p_value=1	major_base=C	major_cov=17/87	major_frequency=7.761e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.239e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=17/87	total_cov=48/87
RA	25	.	1	168096	0	C	T	bias_e_value=1.46175e-06	bias_p_value=6.95169e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.3	fisher_strand_p_value=2.15643e-14	frequency=2.317e-01	ks_quality_p_value=0.992671	major_base=C	major_cov=58/5	major_frequency=7.683e-01	minor_base=T	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.317e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=58/5	total_cov=58/24
RA	26	.	1	219367	0	A	C	bias_e_value=4.41976e-07	bias_p_value=2.10193e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=260.9	fisher_strand_p_value=6.2356e-15	frequency=3.431e-01	ks_quality_p_value=1	major_base=A	major_cov=56/34	major_frequency=6.569e-01	minor_base=C	minor_cov=0/47	new_cov=0/47	polymorphism_frequency=3.431e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=56/34	total_cov=56/81
RA	27	.	1	233906	0	T	A	bias_e_value=0.00490557	bias_p_value=2.33296e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.3	fisher_strand_p_value=9.69784e-11	frequency=2.069e-01	ks_quality_p_value=1	major_base=T	major_cov=64/28	major_frequency=7.931e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.069e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=64/28	total_cov=64/52
RA	28	.	1	237152	0	A	G	bias_e_value=0.0176261	bias_p_value=8.38252e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=310.6	fisher_strand_p_value=3.68943e-10	frequency=2.519e-01	ks_quality_p_value=1	major_base=A	major_cov=43/55	major_frequency=7.481e-01	minor_base=G	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.519e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=43/55	total_cov=76/55
RA	29	.	1	245401	0	A	C	bias_e_value=6.39655e-09	bias_p_value=3.04204e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.0	fisher_strand_p_value=7.99158e-17	frequency=2.917e-01	ks_quality_p_value=1	major_base=A	major_cov=66/19	major_frequency=7.083e-01	minor_base=C	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.917e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=66/19	total_cov=66/55
RA	30	.	1	251230	0	T	G	bias_e_value=2.68754e-10	bias_p_value=1.27812e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=317.5	fisher_strand_p_value=3.09344e-18	frequency=3.130e-01	ks_quality_p_value=1	major_base=T	major_cov=22/68	major_frequency=6.870e-01	minor_base=G	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=3.130e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=22/68	total_cov=65/68
RA	31	.	1	251235	0	C	A	bias_e_value=0.000131163	bias_p_value=6.2378e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=363.1	fisher_strand_p_value=2.2419e-12	frequency=2.263e-01	ks_quality_p_value=1	major_base=C	major_cov=36/70	major_frequency=7.737e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.263e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=36/70	total_cov=67/70
RA	32	.	1	251248	0	A	G	bias_e_value=2.78591e-05	bias_p_value=1.32491e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=347.7	fisher_strand_p_value=4.50204e-13	frequency=2.302e-01	ks_quality_p_value=1	major_base=A	major_cov=35/72	major_frequency=7.698e-01	minor_base=G	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.302e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=35/72	total_cov=69/72
RA	33	.	1	251260	0	T	A	bias_e_value=6.85956e-05	bias_p_value=3.26223e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=371.5	fisher_strand_p_value=1.14481e-12	frequency=2.059e-01	ks_quality_p_value=1	major_base=T	major_cov=32/76	major_frequency=7.941e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.059e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=32/76	total_cov=63/76
RA	34	.	1	251271	0	G	A	bias_e_value=7.8353e-11	bias_p_value=3.72627e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.4	fisher_strand_p_value=8.75123e-19	frequency=3.099e-01	ks_quality_p_value=1	major_base=G	major_cov=22/76	major_frequency=6.901e-01	minor_base=A	minor_cov=43/1	new_cov=43/1	polymorphism_frequency=3.099e-01	polymorphism_score=54.9	prediction=polymorphism	ref_cov=22/76	total_cov=65/77
RA	35	.	1	251293	0	T	A	bias_e_value=1.16906e-05	bias_p_value=5.55974e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=366.3	fisher_strand_p_value=1.84094e-13	frequency=2.180e-01	ks_quality_p_value=0.995816	major_base=T	major_cov=29/75	major_frequency=7.820e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.180e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=29/75	total_cov=59/75
RA	36	.	1	258469	0	C	A	bias_e_value=5.26025e-10	bias_p_value=2.50164e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=453.7	fisher_strand_p_value=6.1573e-18	frequency=2.455e-01	ks_quality_p_value=1	major_base=C	major_cov=36/90	major_frequency=7.545e-01	minor_base=A	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=2.455e-01	polymorphism_score=28.0	prediction=polymorphism	ref_cov=36/90	total_cov=77/90
RA	37	.	1	259368	0	G	A	bias_e_value=2.63216e-06	bias_p_value=1.25179e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.7	fisher_strand_p_value=3.92803e-14	frequency=2.797e-01	ks_quality_p_value=1	major_base=G	major_cov=61/24	major_frequency=7.203e-01	minor_base=A	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.797e-01	polymorphism_score=36.6	prediction=polymorphism	ref_cov=61/24	total_cov=61/57
RA	38	.	1	259389	0	C	A	bias_e_value=0.00108345	bias_p_value=5.15261e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=339.8	fisher_strand_p_value=2.01037e-11	frequency=2.203e-01	ks_quality_p_value=1	major_base=C	major_cov=64/28	major_frequency=7.797e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.203e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=64/28	total_cov=64/54
RA	39	.	1	259419	0	T	C	bias_e_value=1.06955e-12	bias_p_value=5.08653e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.8	fisher_strand_p_value=1.08288e-20	frequency=3.109e-01	ks_quality_p_value=1	major_base=T	major_cov=70/12	major_frequency=6.891e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.109e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=70/12	total_cov=70/50
RA	40	.	1	263975	0	T	G	bias_e_value=5.64131e-06	bias_p_value=2.68287e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=401.4	fisher_strand_p_value=8.63193e-14	frequency=2.653e-01	ks_quality_p_value=1	major_base=T	major_cov=40/68	major_frequency=7.347e-01	minor_base=G	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.653e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=40/68	total_cov=79/68
RA	41	.	1	270216	0	C	T	bias_e_value=3.18559e-08	bias_p_value=1.51499e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.0	fisher_strand_p_value=4.16024e-16	frequency=2.222e-01	ks_quality_p_value=1	major_base=C	major_cov=2/61	major_frequency=7.778e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.222e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=2/61	total_cov=20/61
RA	42	.	1	287488	0	A	G	bias_e_value=1.07623e-10	bias_p_value=5.11827e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.3	fisher_strand_p_value=1.21129e-18	frequency=2.810e-01	ks_quality_p_value=1	major_base=A	major_cov=15/72	major_frequency=7.190e-01	minor_base=G	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.810e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=15/72	total_cov=49/72
RA	43	.	1	287539	0	T	C	bias_e_value=0.0314522	bias_p_value=1.49579e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=346.4	fisher_strand_p_value=6.7639e-10	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=36/64	major_frequency=8.000e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.000e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=36/64	total_cov=61/64
RA	44	.	1	294937	0	T	G	bias_e_value=4.58326e-10	bias_p_value=2.17968e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.4	fisher_strand_p_value=5.34628e-18	frequency=3.385e-01	ks_quality_p_value=1	major_base=T	major_cov=23/63	major_frequency=6.615e-01	minor_base=G	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=3.385e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=23/63	total_cov=68/63
RA	45	.	1	294953	0	T	G	bias_e_value=3.43737e-09	bias_p_value=1.63473e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=296.9	fisher_strand_p_value=4.22375e-17	frequency=3.385e-01	ks_quality_p_value=1	major_base=T	major_cov=25/61	major_frequency=6.615e-01	minor_base=G	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=3.385e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=25/61	total_cov=72/61
RA	46	.	1	315289	0	A	C	bias_e_value=5.26705	bias_p_value=2.50487e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.9	fisher_strand_p_value=1.49871e-07	frequency=2.245e-01	ks_quality_p_value=1	major_base=A	major_cov=45/31	major_frequency=7.755e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.245e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=45/31	total_cov=45/53
RA	47	.	1	319469	0	C	T	bias_e_value=1.08445e-07	bias_p_value=5.15737e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.9	fisher_strand_p_value=1.46701e-15	frequency=3.140e-01	ks_quality_p_value=1	major_base=C	major_cov=8/51	major_frequency=6.860e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.140e-01	polymorphism_score=29.7	prediction=polymorphism	ref_cov=8/51	total_cov=35/51
RA	48	.	1	319502	0	G	T	bias_e_value=0.000878405	bias_p_value=4.17747e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=268.2	fisher_strand_p_value=1.62901e-11	frequency=2.737e-01	ks_quality_p_value=0.992099	major_base=G	major_cov=19/50	major_frequency=7.263e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.737e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=19/50	total_cov=45/50
RA	49	.	1	319521	0	A	T	bias_e_value=0.108167	bias_p_value=5.14412e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.9	fisher_strand_p_value=2.47092e-09	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=24/48	major_frequency=7.500e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=24/48	total_cov=48/48
RA	50	.	1	319550	0	C	T	bias_e_value=0.0056184	bias_p_value=2.67197e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.2	fisher_strand_p_value=1.11728e-10	frequency=2.812e-01	ks_quality_p_value=1	major_base=C	major_cov=22/47	major_frequency=7.188e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.812e-01	polymorphism_score=28.7	prediction=polymorphism	ref_cov=22/47	total_cov=49/47
RA	51	.	1	320841	0	G	A	bias_e_value=1.6201e-09	bias_p_value=7.70476e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.5	fisher_strand_p_value=1.9518e-17	frequency=2.621e-01	ks_quality_p_value=1	major_base=G	major_cov=67/9	major_frequency=7.379e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.621e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=67/9	total_cov=67/36
RA	52	.	1	321786	0	A	C	bias_e_value=0.0239262	bias_p_value=1.13787e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.0	fisher_strand_p_value=5.07964e-10	frequency=4.474e-01	ks_quality_p_value=1	major_base=A	major_cov=27/15	major_frequency=5.526e-01	minor_base=C	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=4.474e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=27/15	total_cov=27/49
RA	53	.	1	340789	0	G	A	bias_e_value=1.69108e-06	bias_p_value=8.04234e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.7	fisher_strand_p_value=2.48799e-14	frequency=2.264e-01	ks_quality_p_value=1	major_base=G	major_cov=68/14	major_frequency=7.736e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.264e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=68/14	total_cov=68/38
RA	54	.	1	340821	0	T	C	bias_e_value=1.82128e-07	bias_p_value=8.66155e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.9	fisher_strand_p_value=2.50176e-15	frequency=2.315e-01	ks_quality_p_value=1	major_base=T	major_cov=70/13	major_frequency=7.685e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.315e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=70/13	total_cov=70/39
RA	55	.	1	347771	0	T	G	bias_e_value=0.0075687	bias_p_value=3.59948e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=312.9	fisher_strand_p_value=1.52495e-10	frequency=2.240e-01	ks_quality_p_value=1	major_base=T	major_cov=35/62	major_frequency=7.760e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.240e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=35/62	total_cov=63/62
RA	56	.	1	349769	0	G	T	bias_e_value=2.25917e-10	bias_p_value=1.07441e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.1	fisher_strand_p_value=2.58923e-18	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=8/56	major_frequency=6.667e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.333e-01	polymorphism_score=24.4	prediction=polymorphism	ref_cov=8/56	total_cov=41/56
RA	57	.	1	349801	0	G	T	bias_e_value=0.00740562	bias_p_value=3.52192e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=319.6	fisher_strand_p_value=1.49066e-10	frequency=2.336e-01	ks_quality_p_value=1	major_base=G	major_cov=26/56	major_frequency=7.664e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.336e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=26/56	total_cov=51/56
RA	58	.	1	349834	0	G	T	bias_e_value=0.0339144	bias_p_value=1.61288e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=299.2	fisher_strand_p_value=7.31953e-10	frequency=2.371e-01	ks_quality_p_value=1	major_base=G	major_cov=23/51	major_frequency=7.629e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=23/51	total_cov=46/51
RA	59	.	1	352301	0	A	C	bias_e_value=3.85825e-09	bias_p_value=1.83489e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=398.4	fisher_strand_p_value=4.75548e-17	frequency=2.649e-01	ks_quality_p_value=1	major_base=A	major_cov=79/32	major_frequency=7.351e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=2.649e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=79/32	total_cov=79/72
RA	60	.	1	352866	0	T	G	bias_e_value=3.45298e-14	bias_p_value=1.64215e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=467.5	fisher_strand_p_value=3.25325e-22	frequency=2.177e-01	ks_quality_p_value=1	major_base=T	major_cov=13/102	major_frequency=7.823e-01	minor_base=G	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.177e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=13/102	total_cov=45/102
RA	61	.	1	352883	0	G	T	bias_e_value=1.73355e-14	bias_p_value=8.24434e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=470.6	fisher_strand_p_value=1.61085e-22	frequency=2.185e-01	ks_quality_p_value=1	major_base=G	major_cov=14/104	major_frequency=7.815e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.185e-01	polymorphism_score=34.5	prediction=polymorphism	ref_cov=14/104	total_cov=47/104
RA	62	.	1	366440	0	C	A	bias_e_value=1.08102e-07	bias_p_value=5.14106e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=433.5	fisher_strand_p_value=1.46224e-15	frequency=2.333e-01	ks_quality_p_value=1	major_base=C	major_cov=82/33	major_frequency=7.667e-01	minor_base=A	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.333e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=82/33	total_cov=82/69
RA	63	.	1	366447	0	C	T	bias_e_value=2.1305e-08	bias_p_value=1.01321e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=327.7	fisher_strand_p_value=2.7511e-16	frequency=2.710e-01	ks_quality_p_value=1	major_base=C	major_cov=81/32	major_frequency=7.290e-01	minor_base=T	minor_cov=1/41	new_cov=1/41	polymorphism_frequency=2.710e-01	polymorphism_score=44.2	prediction=polymorphism	ref_cov=81/32	total_cov=82/73
RA	64	.	1	366455	0	C	A	bias_e_value=1.4417e-07	bias_p_value=6.85635e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=428.6	fisher_strand_p_value=1.96669e-15	frequency=2.516e-01	ks_quality_p_value=1	major_base=C	major_cov=78/38	major_frequency=7.484e-01	minor_base=A	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=2.516e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=78/38	total_cov=78/77
RA	65	.	1	380531	0	T	G	bias_e_value=3.13147e-13	bias_p_value=1.48925e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=340.8	fisher_strand_p_value=3.08801e-21	frequency=2.941e-01	ks_quality_p_value=1	major_base=T	major_cov=17/79	major_frequency=7.059e-01	minor_base=G	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.941e-01	polymorphism_score=33.3	prediction=polymorphism	ref_cov=17/79	total_cov=57/79
RA	66	.	1	380534	0	A	G	bias_e_value=4.42864e-10	bias_p_value=2.10615e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=361.8	fisher_strand_p_value=5.16146e-18	frequency=2.536e-01	ks_quality_p_value=1	major_base=A	major_cov=22/81	major_frequency=7.464e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.536e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=22/81	total_cov=57/81
RA	67	.	1	389316	0	G	T	bias_e_value=1.1179	bias_p_value=5.31645e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.0	fisher_strand_p_value=2.98059e-08	frequency=2.444e-01	ks_quality_p_value=0.971651	major_base=G	major_cov=43/25	major_frequency=7.556e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.444e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=43/25	total_cov=43/47
RA	68	.	1	389325	0	G	C	bias_e_value=0.00971676	bias_p_value=4.62104e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.0	fisher_strand_p_value=1.97963e-10	frequency=2.826e-01	ks_quality_p_value=1	major_base=G	major_cov=46/20	major_frequency=7.174e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.826e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=46/20	total_cov=46/46
RA	69	.	1	421860	0	T	G	bias_e_value=6.33668e-22	bias_p_value=3.01357e-28	consensus_reject=FREQUENCY_CUTOFF	consensus_score=295.4	fisher_strand_p_value=4.39311e-30	frequency=4.110e-01	ks_quality_p_value=1	major_base=T	major_cov=11/75	major_frequency=5.890e-01	minor_base=G	minor_cov=60/0	new_cov=60/0	polymorphism_frequency=4.110e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=11/75	total_cov=72/75
RA	70	.	1	421873	0	C	T	bias_e_value=2.62357e-16	bias_p_value=1.2477e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.9	fisher_strand_p_value=2.2501e-24	frequency=3.566e-01	ks_quality_p_value=1	major_base=C	major_cov=17/75	major_frequency=6.434e-01	minor_base=T	minor_cov=51/0	new_cov=51/0	polymorphism_frequency=3.566e-01	polymorphism_score=48.7	prediction=polymorphism	ref_cov=17/75	total_cov=70/75
RA	71	.	1	421909	0	G	T	bias_e_value=4.27639e-14	bias_p_value=2.03374e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=375.2	fisher_strand_p_value=4.04652e-22	frequency=3.007e-01	ks_quality_p_value=1	major_base=G	major_cov=23/84	major_frequency=6.993e-01	minor_base=T	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=3.007e-01	polymorphism_score=55.7	prediction=polymorphism	ref_cov=23/84	total_cov=70/84
RA	72	.	1	421918	0	C	T	bias_e_value=9.07429e-07	bias_p_value=4.3155e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=394.9	fisher_strand_p_value=1.30904e-14	frequency=2.075e-01	ks_quality_p_value=1	major_base=C	major_cov=38/88	major_frequency=7.925e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.075e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=38/88	total_cov=71/88
RA	73	.	1	441561	0	C	T	bias_e_value=0.00157084	bias_p_value=7.47053e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.6	fisher_strand_p_value=2.98393e-11	frequency=2.436e-01	ks_quality_p_value=0.991777	major_base=C	major_cov=10/49	major_frequency=7.564e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.436e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=10/49	total_cov=29/49
RA	74	.	1	441586	0	C	A	bias_e_value=0.00482222	bias_p_value=2.29332e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.9	fisher_strand_p_value=9.6283e-11	frequency=2.778e-01	ks_quality_p_value=0.989373	major_base=C	major_cov=10/42	major_frequency=7.222e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.778e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=10/42	total_cov=30/42
RA	75	.	1	453890	0	G	A	bias_e_value=0.000102009	bias_p_value=4.8513e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.4	fisher_strand_p_value=1.7274e-12	frequency=2.623e-01	ks_quality_p_value=1	major_base=G	major_cov=61/29	major_frequency=7.377e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.623e-01	polymorphism_score=24.4	prediction=polymorphism	ref_cov=61/29	total_cov=61/61
RA	76	.	1	453908	0	C	A	bias_e_value=1.53743e-08	bias_p_value=7.31164e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=345.1	fisher_strand_p_value=1.96736e-16	frequency=3.071e-01	ks_quality_p_value=1	major_base=C	major_cov=64/24	major_frequency=6.929e-01	minor_base=A	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=3.071e-01	polymorphism_score=51.0	prediction=polymorphism	ref_cov=64/24	total_cov=64/63
RA	77	.	1	453928	0	G	A	bias_e_value=3.75338e-08	bias_p_value=1.78501e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.0	fisher_strand_p_value=4.92455e-16	frequency=2.969e-01	ks_quality_p_value=1	major_base=G	major_cov=65/25	major_frequency=7.031e-01	minor_base=A	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.969e-01	polymorphism_score=30.4	prediction=polymorphism	ref_cov=65/25	total_cov=65/63
RA	78	.	1	453932	0	G	A	bias_e_value=1.30812e-11	bias_p_value=6.2211e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.3	fisher_strand_p_value=1.40077e-19	frequency=3.438e-01	ks_quality_p_value=1	major_base=G	major_cov=65/19	major_frequency=6.562e-01	minor_base=A	minor_cov=0/44	new_cov=0/44	polymorphism_frequency=3.438e-01	polymorphism_score=42.9	prediction=polymorphism	ref_cov=65/19	total_cov=65/63
RA	79	.	1	453954	0	T	C	bias_e_value=6.28947e-05	bias_p_value=2.99111e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=319.0	fisher_strand_p_value=1.04637e-12	frequency=2.443e-01	ks_quality_p_value=1	major_base=T	major_cov=66/33	major_frequency=7.557e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.443e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=66/33	total_cov=66/65
RA	80	.	1	453958	0	A	C	bias_e_value=1.71231e-08	bias_p_value=8.14329e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=302.3	fisher_strand_p_value=2.19768e-16	frequency=2.917e-01	ks_quality_p_value=1	major_base=A	major_cov=65/20	major_frequency=7.083e-01	minor_base=C	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.917e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=65/20	total_cov=65/58
RA	81	.	1	453962	0	G	A	bias_e_value=0.00146394	bias_p_value=6.96212e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=292.3	fisher_strand_p_value=2.79495e-11	frequency=2.047e-01	ks_quality_p_value=0.983915	major_base=G	major_cov=69/32	major_frequency=7.953e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.047e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=69/32	total_cov=69/58
RA	82	.	1	453976	0	A	C	bias_e_value=6.27551e-05	bias_p_value=2.98447e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=330.8	fisher_strand_p_value=1.04396e-12	frequency=2.598e-01	ks_quality_p_value=1	major_base=A	major_cov=67/27	major_frequency=7.402e-01	minor_base=C	minor_cov=1/32	new_cov=1/32	polymorphism_frequency=2.598e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=67/27	total_cov=68/60
RA	83	.	1	459131	0	C	T	bias_e_value=1.02292e-05	bias_p_value=4.86477e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=375.7	fisher_strand_p_value=1.59681e-13	frequency=2.042e-01	ks_quality_p_value=1	major_base=C	major_cov=81/32	major_frequency=7.958e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.042e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=81/32	total_cov=81/61
RA	84	.	1	459140	0	C	T	bias_e_value=1.87936e-06	bias_p_value=8.93777e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=346.3	fisher_strand_p_value=2.77435e-14	frequency=2.101e-01	ks_quality_p_value=1	major_base=C	major_cov=81/28	major_frequency=7.899e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.101e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=81/28	total_cov=81/57
RA	85	.	1	459152	0	A	T	bias_e_value=3.55931e-07	bias_p_value=1.69272e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=365.5	fisher_strand_p_value=4.98861e-15	frequency=2.132e-01	ks_quality_p_value=1	major_base=A	major_cov=82/25	major_frequency=7.868e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.132e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=82/25	total_cov=82/55
RA	86	.	1	466540	0	T	G	bias_e_value=8.66755e-19	bias_p_value=4.12206e-25	consensus_reject=FREQUENCY_CUTOFF	consensus_score=428.9	fisher_strand_p_value=6.72842e-27	frequency=3.474e-01	ks_quality_p_value=1	major_base=T	major_cov=32/92	major_frequency=6.526e-01	minor_base=G	minor_cov=66/0	new_cov=66/0	polymorphism_frequency=3.474e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=32/92	total_cov=98/92
RA	87	.	1	466558	0	T	G	bias_e_value=6.33471e-15	bias_p_value=3.01263e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=345.4	fisher_strand_p_value=5.77058e-23	frequency=3.625e-01	ks_quality_p_value=1	major_base=T	major_cov=27/75	major_frequency=6.375e-01	minor_base=G	minor_cov=58/0	new_cov=58/0	polymorphism_frequency=3.625e-01	polymorphism_score=29.9	prediction=polymorphism	ref_cov=27/75	total_cov=85/75
RA	88	.	1	466561	0	T	G	bias_e_value=4.35567e-16	bias_p_value=2.07144e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=361.3	fisher_strand_p_value=3.77073e-24	frequency=3.750e-01	ks_quality_p_value=1	major_base=T	major_cov=25/75	major_frequency=6.250e-01	minor_base=G	minor_cov=60/0	new_cov=60/0	polymorphism_frequency=3.750e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=25/75	total_cov=85/75
RA	89	.	1	466581	0	A	G	bias_e_value=4.46165e-06	bias_p_value=2.12185e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=417.8	fisher_strand_p_value=6.77407e-14	frequency=2.275e-01	ks_quality_p_value=1	major_base=A	major_cov=48/81	major_frequency=7.725e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.275e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=48/81	total_cov=86/81
RA	90	.	1	486680	0	G	T	bias_e_value=1.76772e-07	bias_p_value=8.40683e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.7	fisher_strand_p_value=2.42604e-15	frequency=3.217e-01	ks_quality_p_value=1	major_base=G	major_cov=21/57	major_frequency=6.783e-01	minor_base=T	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.217e-01	polymorphism_score=36.8	prediction=polymorphism	ref_cov=21/57	total_cov=58/57
RA	91	.	1	505473	0	T	G	bias_e_value=7.24147e-09	bias_p_value=3.44386e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=320.7	fisher_strand_p_value=9.07756e-17	frequency=2.941e-01	ks_quality_p_value=1	major_base=T	major_cov=27/69	major_frequency=7.059e-01	minor_base=G	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.941e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=27/69	total_cov=68/70
RA	92	.	1	524347	0	T	G	bias_e_value=2.81124e-13	bias_p_value=1.33695e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.6	fisher_strand_p_value=2.76591e-21	frequency=3.475e-01	ks_quality_p_value=1	major_base=T	major_cov=12/65	major_frequency=6.525e-01	minor_base=G	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=3.475e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=12/65	total_cov=53/65
RA	93	.	1	529308	0	G	A	bias_e_value=0.00117551	bias_p_value=5.59041e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=351.5	fisher_strand_p_value=2.18843e-11	frequency=2.148e-01	ks_quality_p_value=1	major_base=G	major_cov=46/71	major_frequency=7.852e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.148e-01	polymorphism_score=25.4	prediction=polymorphism	ref_cov=46/71	total_cov=79/71
RA	94	.	1	560529	0	T	G	bias_e_value=1.41869e-17	bias_p_value=6.74695e-24	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.0	fisher_strand_p_value=1.15489e-25	frequency=3.750e-01	ks_quality_p_value=1	major_base=T	major_cov=1/59	major_frequency=6.250e-01	minor_base=G	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.750e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=1/59	total_cov=37/59
RA	95	.	1	560546	0	G	T	bias_e_value=3.07225e-13	bias_p_value=1.46108e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.1	fisher_strand_p_value=3.02838e-21	frequency=3.407e-01	ks_quality_p_value=1	major_base=G	major_cov=3/57	major_frequency=6.593e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.407e-01	polymorphism_score=37.6	prediction=polymorphism	ref_cov=3/57	total_cov=34/57
RA	96	.	1	560566	0	C	T	bias_e_value=0.000399408	bias_p_value=1.89948e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.5	fisher_strand_p_value=7.12277e-12	frequency=2.444e-01	ks_quality_p_value=1	major_base=C	major_cov=14/54	major_frequency=7.556e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.444e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=14/54	total_cov=36/54
RA	97	.	1	586007	0	G	A	bias_e_value=1.43996e-08	bias_p_value=6.84807e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=295.8	fisher_strand_p_value=1.84867e-16	frequency=2.261e-01	ks_quality_p_value=0.994932	major_base=G	major_cov=76/13	major_frequency=7.739e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.261e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=76/13	total_cov=76/39
RA	98	.	1	623613	0	C	T	bias_e_value=0.00531285	bias_p_value=2.52666e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=284.7	fisher_strand_p_value=1.05395e-10	frequency=2.124e-01	ks_quality_p_value=1	major_base=C	major_cov=27/62	major_frequency=7.876e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.124e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=27/62	total_cov=51/62
RA	99	.	1	624607	0	A	T	bias_e_value=9.89986e-11	bias_p_value=4.70812e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.1	fisher_strand_p_value=1.11197e-18	frequency=3.162e-01	ks_quality_p_value=1	major_base=A	major_cov=15/65	major_frequency=6.838e-01	minor_base=T	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.162e-01	polymorphism_score=45.0	prediction=polymorphism	ref_cov=15/65	total_cov=52/65
RA	100	.	1	624626	0	C	T	bias_e_value=5.67748e-07	bias_p_value=2.70006e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.7	fisher_strand_p_value=8.07184e-15	frequency=2.589e-01	ks_quality_p_value=1	major_base=C	major_cov=18/65	major_frequency=7.411e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.589e-01	polymorphism_score=25.7	prediction=polymorphism	ref_cov=18/65	total_cov=48/65
RA	101	.	1	640440	0	G	T	bias_e_value=0.00763212	bias_p_value=3.62964e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=273.8	fisher_strand_p_value=1.5383e-10	frequency=2.233e-01	ks_quality_p_value=1	major_base=G	major_cov=23/57	major_frequency=7.767e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.233e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=23/57	total_cov=46/57
RA	102	.	1	653416	0	T	G	bias_e_value=2.48957e-06	bias_p_value=1.18398e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.7	fisher_strand_p_value=3.70856e-14	frequency=3.239e-01	ks_quality_p_value=1	major_base=T	major_cov=5/43	major_frequency=6.761e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.239e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=5/43	total_cov=29/43
RA	103	.	1	653423	0	T	C	bias_e_value=0.00606968	bias_p_value=2.88658e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.8	fisher_strand_p_value=1.22095e-10	frequency=2.469e-01	ks_quality_p_value=0.991937	major_base=T	major_cov=13/48	major_frequency=7.531e-01	minor_base=C	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.469e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=13/48	total_cov=34/48
RA	104	.	1	653439	0	G	A	bias_e_value=2.49897e-05	bias_p_value=1.18845e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.7	fisher_strand_p_value=4.02297e-13	frequency=2.927e-01	ks_quality_p_value=1	major_base=G	major_cov=10/48	major_frequency=7.073e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.927e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=10/48	total_cov=35/49
RA	105	.	1	656558	0	G	A	bias_e_value=1.064e-05	bias_p_value=5.06012e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=301.3	fisher_strand_p_value=1.66315e-13	frequency=2.083e-01	ks_quality_p_value=1	major_base=G	major_cov=74/21	major_frequency=7.917e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.083e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=74/21	total_cov=74/47
RA	106	.	1	656562	0	G	A	bias_e_value=4.70094e-08	bias_p_value=2.23565e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=284.9	fisher_strand_p_value=6.20744e-16	frequency=2.397e-01	ks_quality_p_value=1	major_base=G	major_cov=74/18	major_frequency=7.603e-01	minor_base=A	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.397e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=74/18	total_cov=74/47
RA	107	.	1	660773	0	A	T	bias_e_value=0.0109469	bias_p_value=5.20606e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.8	fisher_strand_p_value=2.24222e-10	frequency=2.427e-01	ks_quality_p_value=1	major_base=A	major_cov=25/53	major_frequency=7.573e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.427e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=25/53	total_cov=50/54
RA	108	.	1	660781	0	T	A	bias_e_value=0.0158945	bias_p_value=7.55902e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.1	fisher_strand_p_value=3.31122e-10	frequency=2.300e-01	ks_quality_p_value=1	major_base=T	major_cov=23/54	major_frequency=7.700e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.300e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=23/54	total_cov=47/54
RA	109	.	1	660793	0	T	A	bias_e_value=2.62565e-07	bias_p_value=1.24869e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.7	fisher_strand_p_value=3.64635e-15	frequency=3.131e-01	ks_quality_p_value=1	major_base=T	major_cov=14/54	major_frequency=6.869e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.131e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=14/54	total_cov=45/54
RA	110	.	1	660797	0	G	A	bias_e_value=6.30283e-11	bias_p_value=2.99746e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.2	fisher_strand_p_value=7.00297e-19	frequency=3.636e-01	ks_quality_p_value=1	major_base=G	major_cov=9/54	major_frequency=6.364e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.636e-01	polymorphism_score=47.7	prediction=polymorphism	ref_cov=9/54	total_cov=45/54
RA	111	.	1	660814	0	G	T	bias_e_value=0.00267788	bias_p_value=1.27353e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=268.9	fisher_strand_p_value=5.15854e-11	frequency=2.766e-01	ks_quality_p_value=1	major_base=G	major_cov=20/48	major_frequency=7.234e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.766e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=20/48	total_cov=47/48
RA	112	.	1	660833	0	A	T	bias_e_value=0.285067	bias_p_value=1.35571e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.4	fisher_strand_p_value=6.8472e-09	frequency=2.474e-01	ks_quality_p_value=1	major_base=A	major_cov=27/46	major_frequency=7.526e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.474e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=27/46	total_cov=51/46
RA	113	.	1	660842	0	T	A	bias_e_value=0.103736	bias_p_value=4.9334e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.0	fisher_strand_p_value=2.36471e-09	frequency=2.680e-01	ks_quality_p_value=1	major_base=T	major_cov=26/45	major_frequency=7.320e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.680e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=26/45	total_cov=52/45
RA	114	.	1	660846	0	C	T	bias_e_value=0.000833401	bias_p_value=3.96344e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.9	fisher_strand_p_value=1.5301e-11	frequency=3.163e-01	ks_quality_p_value=1	major_base=C	major_cov=22/45	major_frequency=6.837e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.163e-01	polymorphism_score=25.8	prediction=polymorphism	ref_cov=22/45	total_cov=53/45
RA	115	.	1	660868	0	A	T	bias_e_value=15.8728	bias_p_value=7.54869e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=269.9	fisher_strand_p_value=4.8584e-07	frequency=2.143e-01	ks_quality_p_value=1	major_base=A	major_cov=33/44	major_frequency=7.857e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.143e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=33/44	total_cov=54/44
RA	116	.	1	666877	0	C	T	bias_e_value=6.76202e-05	bias_p_value=3.21585e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.9	fisher_strand_p_value=1.12795e-12	frequency=3.069e-01	ks_quality_p_value=1	major_base=C	major_cov=20/50	major_frequency=6.931e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.069e-01	polymorphism_score=29.3	prediction=polymorphism	ref_cov=20/50	total_cov=51/50
RA	117	.	1	666889	0	T	G	bias_e_value=0.0024003	bias_p_value=1.14152e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.1	fisher_strand_p_value=4.60258e-11	frequency=2.475e-01	ks_quality_p_value=1	major_base=T	major_cov=22/54	major_frequency=7.525e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.475e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=22/54	total_cov=49/54
RA	118	.	1	666905	0	A	C	bias_e_value=0.150408	bias_p_value=7.15302e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=323.0	fisher_strand_p_value=3.49402e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=A	major_cov=27/57	major_frequency=8.000e-01	minor_base=C	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.000e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=27/57	total_cov=49/57
RA	119	.	1	676559	0	C	T	bias_e_value=0.0381219	bias_p_value=1.81298e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.5	fisher_strand_p_value=8.27363e-10	frequency=2.179e-01	ks_quality_p_value=1	major_base=C	major_cov=49/12	major_frequency=7.821e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.179e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=49/12	total_cov=49/33
RA	120	.	1	676574	0	C	A	bias_e_value=1.13059e-05	bias_p_value=5.37679e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.7	fisher_strand_p_value=1.77089e-13	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=53/11	major_frequency=7.273e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.727e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=53/11	total_cov=53/35
RA	121	.	1	676592	0	G	T	bias_e_value=1.67986e-07	bias_p_value=7.98897e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=242.8	fisher_strand_p_value=2.30197e-15	frequency=2.841e-01	ks_quality_p_value=1	major_base=G	major_cov=55/8	major_frequency=7.159e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.841e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=55/8	total_cov=55/33
RA	122	.	1	756043	0	G	A	bias_e_value=1.42135e-12	bias_p_value=6.75956e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.6	fisher_strand_p_value=1.44802e-20	frequency=3.214e-01	ks_quality_p_value=1	major_base=G	major_cov=10/66	major_frequency=6.786e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.214e-01	polymorphism_score=38.4	prediction=polymorphism	ref_cov=10/66	total_cov=46/66
RA	123	.	1	756046	0	C	A	bias_e_value=0.000330625	bias_p_value=1.57237e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=313.4	fisher_strand_p_value=5.85306e-12	frequency=2.162e-01	ks_quality_p_value=1	major_base=C	major_cov=22/65	major_frequency=7.838e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.162e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=22/65	total_cov=46/65
RA	124	.	1	756057	0	A	T	bias_e_value=4.47979e-09	bias_p_value=2.13047e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.1	fisher_strand_p_value=5.54359e-17	frequency=3.019e-01	ks_quality_p_value=1	major_base=A	major_cov=13/61	major_frequency=6.981e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.019e-01	polymorphism_score=30.7	prediction=polymorphism	ref_cov=13/61	total_cov=45/61
RA	125	.	1	764954	0	T	G	bias_e_value=1.01408e-05	bias_p_value=4.82268e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=413.0	fisher_strand_p_value=1.58253e-13	frequency=2.394e-01	ks_quality_p_value=1	major_base=T	major_cov=36/72	major_frequency=7.606e-01	minor_base=G	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.394e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=36/72	total_cov=71/72
RA	126	.	1	774884	0	C	T	bias_e_value=8.07028e-10	bias_p_value=3.83802e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.2	fisher_strand_p_value=9.54968e-18	frequency=2.917e-01	ks_quality_p_value=1	major_base=C	major_cov=17/68	major_frequency=7.083e-01	minor_base=T	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.917e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=17/68	total_cov=54/68
RA	127	.	1	774887	0	A	G	bias_e_value=9.30371e-06	bias_p_value=4.42461e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.5	fisher_strand_p_value=1.45517e-13	frequency=2.353e-01	ks_quality_p_value=0.994842	major_base=A	major_cov=23/68	major_frequency=7.647e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.353e-01	polymorphism_score=24.2	prediction=polymorphism	ref_cov=23/68	total_cov=53/68
RA	128	.	1	774916	0	T	G	bias_e_value=6.24439e-12	bias_p_value=2.96967e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.7	fisher_strand_p_value=6.57465e-20	frequency=3.167e-01	ks_quality_p_value=1	major_base=T	major_cov=14/68	major_frequency=6.833e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.167e-01	polymorphism_score=25.4	prediction=polymorphism	ref_cov=14/68	total_cov=56/68
RA	129	.	1	774937	0	C	T	bias_e_value=0.00915349	bias_p_value=4.35317e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.4	fisher_strand_p_value=1.85991e-10	frequency=2.035e-01	ks_quality_p_value=1	major_base=C	major_cov=27/63	major_frequency=7.965e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.035e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=27/63	total_cov=52/63
RA	130	.	1	774953	0	C	T	bias_e_value=9.56673e-06	bias_p_value=4.54969e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=268.4	fisher_strand_p_value=1.49e-13	frequency=2.407e-01	ks_quality_p_value=1	major_base=C	major_cov=18/64	major_frequency=7.593e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.407e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=18/64	total_cov=44/64
RA	131	.	1	779573	0	A	G	bias_e_value=0.00208177	bias_p_value=9.90036e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.5	fisher_strand_p_value=3.96805e-11	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=40/56	major_frequency=7.273e-01	minor_base=G	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.727e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=40/56	total_cov=77/56
RA	132	.	1	782001	0	C	T	bias_e_value=6.0756e-06	bias_p_value=2.8894e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.5	fisher_strand_p_value=9.31941e-14	frequency=2.893e-01	ks_quality_p_value=1	major_base=C	major_cov=27/59	major_frequency=7.107e-01	minor_base=T	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.893e-01	polymorphism_score=26.3	prediction=polymorphism	ref_cov=27/59	total_cov=62/59
RA	133	.	1	782772	0	G	A	bias_e_value=0.000187146	bias_p_value=8.9002e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=241.1	fisher_strand_p_value=3.24175e-12	frequency=2.593e-01	ks_quality_p_value=1	major_base=G	major_cov=23/57	major_frequency=7.407e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.593e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=23/57	total_cov=51/57
RA	134	.	1	826671	0	C	T	bias_e_value=3.16255e-06	bias_p_value=1.50403e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.2	fisher_strand_p_value=4.80396e-14	frequency=3.117e-01	ks_quality_p_value=0.988307	major_base=C	major_cov=46/7	major_frequency=6.883e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.117e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=46/7	total_cov=48/32
RA	135	.	1	855479	0	C	T	bias_e_value=0.0722086	bias_p_value=3.43406e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.1	fisher_strand_p_value=1.61656e-09	frequency=2.535e-01	ks_quality_p_value=1	major_base=C	major_cov=8/45	major_frequency=7.465e-01	minor_base=T	minor_cov=17/1	new_cov=17/1	polymorphism_frequency=2.535e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=8/45	total_cov=25/46
RA	136	.	1	855484	0	G	C	bias_e_value=0.0288338	bias_p_value=1.37126e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.3	fisher_strand_p_value=6.38116e-10	frequency=2.254e-01	ks_quality_p_value=0.967753	major_base=G	major_cov=9/46	major_frequency=7.746e-01	minor_base=C	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.254e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=9/46	total_cov=25/46
RA	137	.	1	855494	0	G	T	bias_e_value=8.61976e-05	bias_p_value=4.09934e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.5	fisher_strand_p_value=1.45063e-12	frequency=2.571e-01	ks_quality_p_value=1	major_base=G	major_cov=5/47	major_frequency=7.429e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.571e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=5/47	total_cov=23/47
RA	138	.	1	855515	0	A	G	bias_e_value=0.000251131	bias_p_value=1.19432e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.0	fisher_strand_p_value=4.39901e-12	frequency=2.297e-01	ks_quality_p_value=1	major_base=A	major_cov=6/51	major_frequency=7.703e-01	minor_base=G	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.297e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=6/51	total_cov=23/51
RA	139	.	1	889261	0	G	A	bias_e_value=2.89083e-06	bias_p_value=1.37481e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.0	fisher_strand_p_value=4.3451e-14	frequency=2.063e-01	ks_quality_p_value=0.995882	major_base=G	major_cov=78/22	major_frequency=7.937e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.063e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=78/22	total_cov=78/49
RA	140	.	1	889877	0	C	T	bias_e_value=0.082439	bias_p_value=3.92059e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.9	fisher_strand_p_value=1.85775e-09	frequency=2.185e-01	ks_quality_p_value=1	major_base=C	major_cov=57/36	major_frequency=7.815e-01	minor_base=T	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.185e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=57/36	total_cov=57/65
RA	141	.	1	940557	0	G	A	bias_e_value=0.312192	bias_p_value=1.48471e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.8	fisher_strand_p_value=7.53517e-09	frequency=2.326e-01	ks_quality_p_value=1	major_base=G	major_cov=20/46	major_frequency=7.674e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.326e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=20/46	total_cov=40/46
RA	142	.	1	973683	0	A	C	bias_e_value=9.29495e-10	bias_p_value=4.42044e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=315.1	fisher_strand_p_value=1.10387e-17	frequency=2.845e-01	ks_quality_p_value=1	major_base=A	major_cov=68/15	major_frequency=7.155e-01	minor_base=C	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.845e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=68/15	total_cov=68/48
RA	143	.	1	974582	0	G	A	bias_e_value=1.33007e-05	bias_p_value=6.32546e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.0	fisher_strand_p_value=2.09493e-13	frequency=2.391e-01	ks_quality_p_value=1	major_base=G	major_cov=11/59	major_frequency=7.609e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.391e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=11/59	total_cov=33/60
RA	144	.	1	983722	0	A	G	bias_e_value=0.00114549	bias_p_value=5.44766e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.8	fisher_strand_p_value=2.13031e-11	frequency=2.198e-01	ks_quality_p_value=1	major_base=A	major_cov=14/57	major_frequency=7.802e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.198e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=14/57	total_cov=34/58
RA	145	.	1	1004757	0	C	A	bias_e_value=5.61695e-05	bias_p_value=2.67128e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.3	fisher_strand_p_value=9.30665e-13	frequency=2.784e-01	ks_quality_p_value=1	major_base=C	major_cov=53/17	major_frequency=7.216e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.784e-01	polymorphism_score=22.9	prediction=polymorphism	ref_cov=53/17	total_cov=53/45
RA	146	.	1	1029359	0	T	C	consensus_score=540.1	frequency=1	major_base=C	major_cov=63/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/73
RA	147	.	1	1032133	0	C	T	bias_e_value=8.2516e-06	bias_p_value=3.92425e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.0	fisher_strand_p_value=1.27877e-13	frequency=2.421e-01	ks_quality_p_value=1	major_base=C	major_cov=12/60	major_frequency=7.579e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.421e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=12/60	total_cov=35/60
RA	148	.	1	1055968	0	C	T	bias_e_value=0.000134862	bias_p_value=6.4137e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.1	fisher_strand_p_value=2.30751e-12	frequency=2.581e-01	ks_quality_p_value=1	major_base=C	major_cov=15/54	major_frequency=7.419e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.581e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=15/54	total_cov=39/54
RA	149	.	1	1055974	0	A	C	bias_e_value=5.91523e-05	bias_p_value=2.81313e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.6	fisher_strand_p_value=9.81921e-13	frequency=2.660e-01	ks_quality_p_value=1	major_base=A	major_cov=15/54	major_frequency=7.340e-01	minor_base=C	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.660e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=15/54	total_cov=40/54
RA	150	.	1	1055993	0	C	T	bias_e_value=4.22694e-05	bias_p_value=2.01022e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.1	fisher_strand_p_value=6.93243e-13	frequency=2.842e-01	ks_quality_p_value=1	major_base=C	major_cov=16/52	major_frequency=7.158e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.842e-01	polymorphism_score=26.0	prediction=polymorphism	ref_cov=16/52	total_cov=43/52
RA	151	.	1	1060659	0	A	C	bias_e_value=5.46791e-07	bias_p_value=2.6004e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.8	fisher_strand_p_value=7.76489e-15	frequency=3.196e-01	ks_quality_p_value=1	major_base=A	major_cov=52/14	major_frequency=6.804e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.196e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=52/14	total_cov=52/45
RA	152	.	1	1060697	0	A	C	bias_e_value=1.68402e-12	bias_p_value=8.00875e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.1	fisher_strand_p_value=1.72201e-20	frequency=3.714e-01	ks_quality_p_value=1	major_base=A	major_cov=57/9	major_frequency=6.286e-01	minor_base=C	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=3.714e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=57/9	total_cov=57/48
RA	153	.	1	1101533	0	G	A	bias_e_value=0.958567	bias_p_value=4.5587e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.4	fisher_strand_p_value=2.46151e-08	frequency=2.088e-01	ks_quality_p_value=1	major_base=G	major_cov=23/49	major_frequency=7.912e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.088e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=23/49	total_cov=42/49
RA	154	.	1	1111438	0	C	T	bias_e_value=0.000289107	bias_p_value=1.37492e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.1	fisher_strand_p_value=5.09164e-12	frequency=2.700e-01	ks_quality_p_value=1	major_base=C	major_cov=53/20	major_frequency=7.300e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.700e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=53/20	total_cov=53/47
RA	155	.	1	1111450	0	G	A	bias_e_value=4.67063e-08	bias_p_value=2.22123e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.7	fisher_strand_p_value=6.16628e-16	frequency=3.500e-01	ks_quality_p_value=1	major_base=G	major_cov=51/14	major_frequency=6.500e-01	minor_base=A	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=3.500e-01	polymorphism_score=32.9	prediction=polymorphism	ref_cov=51/14	total_cov=51/49
RA	156	.	1	1129501	0	T	C	bias_e_value=25.9917	bias_p_value=1.2361e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.2	fisher_strand_p_value=8.23535e-07	frequency=3.833e-01	ks_quality_p_value=1	major_base=T	major_cov=22/15	major_frequency=6.167e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.833e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=22/15	total_cov=22/38
RA	157	.	1	1154537	0	T	G	bias_e_value=1.32419e-10	bias_p_value=6.29753e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.0	fisher_strand_p_value=1.4979e-18	frequency=4.946e-01	ks_quality_p_value=1	major_base=T	major_cov=8/39	major_frequency=5.054e-01	minor_base=G	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=4.946e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=8/39	total_cov=54/39
RA	158	.	1	1154540	0	T	G	bias_e_value=7.38053e-07	bias_p_value=3.50999e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.1	fisher_strand_p_value=1.05787e-14	frequency=4.301e-01	ks_quality_p_value=1	major_base=T	major_cov=14/39	major_frequency=5.699e-01	minor_base=G	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=4.301e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=14/39	total_cov=54/39
RA	159	.	1	1165195	0	C	T	bias_e_value=6.09598e-06	bias_p_value=2.89909e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.0	fisher_strand_p_value=9.35172e-14	frequency=2.055e-01	ks_quality_p_value=1	major_base=C	major_cov=2/56	major_frequency=7.945e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.055e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=2/56	total_cov=17/56
RA	160	.	1	1179973	0	C	A	bias_e_value=0.000677842	bias_p_value=3.22364e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=269.7	fisher_strand_p_value=1.23426e-11	frequency=2.326e-01	ks_quality_p_value=1	major_base=C	major_cov=54/12	major_frequency=7.674e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.326e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=54/12	total_cov=54/35
RA	161	.	1	1179978	0	C	T	bias_e_value=0.052001	bias_p_value=2.47304e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.0	fisher_strand_p_value=1.1456e-09	frequency=2.069e-01	ks_quality_p_value=1	major_base=C	major_cov=53/16	major_frequency=7.931e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.069e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=53/16	total_cov=53/34
RA	162	.	1	1179998	0	A	T	bias_e_value=0.00163682	bias_p_value=7.78429e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.4	fisher_strand_p_value=3.08893e-11	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=51/15	major_frequency=7.500e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.500e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=51/15	total_cov=51/37
RA	163	.	1	1181184	0	G	T	bias_e_value=0.00026947	bias_p_value=1.28153e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=346.3	fisher_strand_p_value=4.73301e-12	frequency=2.126e-01	ks_quality_p_value=1	major_base=G	major_cov=70/30	major_frequency=7.874e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.126e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=70/30	total_cov=70/57
RA	164	.	1	1181190	0	A	C	bias_e_value=1.61885e-07	bias_p_value=7.69882e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=353.7	fisher_strand_p_value=2.21593e-15	frequency=2.481e-01	ks_quality_p_value=1	major_base=A	major_cov=73/24	major_frequency=7.519e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.481e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=73/24	total_cov=73/57
RA	165	.	1	1186425	0	C	T	bias_e_value=3.2009e-07	bias_p_value=1.52227e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.2	fisher_strand_p_value=4.47186e-15	frequency=2.783e-01	ks_quality_p_value=1	major_base=C	major_cov=63/20	major_frequency=7.217e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.783e-01	polymorphism_score=30.3	prediction=polymorphism	ref_cov=63/20	total_cov=63/52
RA	166	.	1	1186428	0	C	T	bias_e_value=0.0150838	bias_p_value=7.17347e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.5	fisher_strand_p_value=3.87913e-10	frequency=2.000e-01	ks_quality_p_value=0.808121	major_base=C	major_cov=63/29	major_frequency=8.000e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.000e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=63/29	total_cov=63/52
RA	167	.	1	1188004	0	T	A	bias_e_value=0.000624342	bias_p_value=2.96921e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.6	fisher_strand_p_value=1.13314e-11	frequency=2.532e-01	ks_quality_p_value=1	major_base=T	major_cov=49/10	major_frequency=7.468e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.532e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=49/10	total_cov=49/30
RA	168	.	1	1203288	0	T	G	bias_e_value=5.01287e-05	bias_p_value=2.38399e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.0	fisher_strand_p_value=8.27179e-13	frequency=3.415e-01	ks_quality_p_value=1	major_base=T	major_cov=12/42	major_frequency=6.585e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.415e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=12/42	total_cov=41/42
RA	169	.	1	1209170	0	C	A	bias_e_value=7.88707e-05	bias_p_value=3.75089e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.9	fisher_strand_p_value=1.32301e-12	frequency=3.333e-01	ks_quality_p_value=1	major_base=C	major_cov=40/8	major_frequency=6.667e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.333e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=40/8	total_cov=40/32
RA	170	.	1	1227148	0	C	T	bias_e_value=0.0880982	bias_p_value=4.18973e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.0	fisher_strand_p_value=1.99186e-09	frequency=2.128e-01	ks_quality_p_value=1	major_base=C	major_cov=53/21	major_frequency=7.872e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.128e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=53/21	total_cov=53/41
RA	171	.	1	1261003	0	G	T	bias_e_value=0.000131836	bias_p_value=6.26979e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.4	fisher_strand_p_value=2.25383e-12	frequency=2.989e-01	ks_quality_p_value=1	major_base=G	major_cov=14/47	major_frequency=7.011e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.989e-01	polymorphism_score=29.3	prediction=polymorphism	ref_cov=14/47	total_cov=40/47
RA	172	.	1	1287510	0	G	A	bias_e_value=0.6747	bias_p_value=3.2087e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.0	fisher_strand_p_value=1.69854e-08	frequency=3.151e-01	ks_quality_p_value=1	major_base=G	major_cov=33/17	major_frequency=6.849e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.151e-01	polymorphism_score=19.3	prediction=polymorphism	ref_cov=33/17	total_cov=33/40
RA	173	.	1	1287522	0	A	C	bias_e_value=0.00072254	bias_p_value=3.43621e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.3	fisher_strand_p_value=1.31901e-11	frequency=3.784e-01	ks_quality_p_value=1	major_base=A	major_cov=35/11	major_frequency=6.216e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.784e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=35/11	total_cov=35/40
RA	174	.	1	1287543	0	G	A	bias_e_value=9.16266	bias_p_value=4.35753e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=144.7	fisher_strand_p_value=2.70252e-07	frequency=2.533e-01	ks_quality_p_value=1	major_base=G	major_cov=36/20	major_frequency=7.467e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.533e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=36/20	total_cov=36/40
RA	175	.	1	1299461	0	A	C	bias_e_value=0.131119	bias_p_value=6.23568e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.6	fisher_strand_p_value=3.02461e-09	frequency=2.558e-01	ks_quality_p_value=1	major_base=A	major_cov=20/44	major_frequency=7.442e-01	minor_base=C	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.558e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=20/44	total_cov=42/44
RA	176	.	1	1299466	0	G	T	bias_e_value=0.0857174	bias_p_value=4.0765e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.9	fisher_strand_p_value=1.93539e-09	frequency=2.588e-01	ks_quality_p_value=1	major_base=G	major_cov=19/44	major_frequency=7.412e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.588e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=19/44	total_cov=41/44
RA	177	.	1	1299489	0	T	A	bias_e_value=0.196453	bias_p_value=9.3428e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.5	fisher_strand_p_value=4.62714e-09	frequency=2.529e-01	ks_quality_p_value=1	major_base=T	major_cov=21/44	major_frequency=7.471e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.529e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=21/44	total_cov=44/44
RA	178	.	1	1320358	0	G	A	bias_e_value=0.350431	bias_p_value=1.66656e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.5	fisher_strand_p_value=8.51069e-09	frequency=2.043e-01	ks_quality_p_value=1	major_base=G	major_cov=22/52	major_frequency=7.957e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.043e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=22/52	total_cov=41/52
RA	179	.	1	1320359	0	T	A	bias_e_value=0.000186385	bias_p_value=8.86401e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.7	fisher_strand_p_value=3.22807e-12	frequency=2.558e-01	ks_quality_p_value=1	major_base=T	major_cov=12/52	major_frequency=7.442e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.558e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=12/52	total_cov=42/52
RA	180	.	1	1320382	0	G	A	bias_e_value=2.72108	bias_p_value=1.29408e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.4	fisher_strand_p_value=7.43079e-08	frequency=2.093e-01	ks_quality_p_value=1	major_base=G	major_cov=22/46	major_frequency=7.907e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.093e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=22/46	total_cov=40/46
RA	181	.	1	1320399	0	C	T	bias_e_value=0.00185189	bias_p_value=8.80713e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.5	fisher_strand_p_value=3.51273e-11	frequency=2.625e-01	ks_quality_p_value=1	major_base=C	major_cov=12/47	major_frequency=7.375e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.625e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=12/47	total_cov=35/47
RA	182	.	1	1325527	0	A	T	bias_e_value=0.879687	bias_p_value=4.18357e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.3	fisher_strand_p_value=2.24794e-08	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=17/40	major_frequency=7.500e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.500e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=17/40	total_cov=37/40
RA	183	.	1	1325537	0	C	A	bias_e_value=0.276769	bias_p_value=1.31625e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.3	fisher_strand_p_value=6.63747e-09	frequency=2.535e-01	ks_quality_p_value=1	major_base=C	major_cov=13/40	major_frequency=7.465e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.535e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=13/40	total_cov=31/40
RA	184	.	1	1325563	0	G	T	bias_e_value=0.0101478	bias_p_value=4.82602e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.6	fisher_strand_p_value=2.07147e-10	frequency=2.632e-01	ks_quality_p_value=1	major_base=G	major_cov=12/44	major_frequency=7.368e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.632e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=12/44	total_cov=32/44
RA	185	.	1	1328584	0	A	C	bias_e_value=3.74187e-14	bias_p_value=1.77954e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=303.2	fisher_strand_p_value=3.53116e-22	frequency=3.465e-01	ks_quality_p_value=1	major_base=A	major_cov=69/14	major_frequency=6.535e-01	minor_base=C	minor_cov=0/44	new_cov=0/44	polymorphism_frequency=3.465e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=69/14	total_cov=69/60
RA	186	.	1	1330965	0	G	A	bias_e_value=2.86113	bias_p_value=1.36068e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.2	fisher_strand_p_value=7.92618e-08	frequency=2.593e-01	ks_quality_p_value=0.988776	major_base=G	major_cov=22/38	major_frequency=7.407e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.593e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=22/38	total_cov=44/38
RA	187	.	1	1330969	0	C	A	bias_e_value=0.886979	bias_p_value=4.21825e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.8	fisher_strand_p_value=2.26764e-08	frequency=2.805e-01	ks_quality_p_value=1	major_base=C	major_cov=21/38	major_frequency=7.195e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.805e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=21/38	total_cov=44/38
RA	188	.	1	1330981	0	G	C	bias_e_value=1.43292	bias_p_value=6.81459e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.6	fisher_strand_p_value=6.67516e-08	frequency=2.683e-01	ks_quality_p_value=0.564194	major_base=G	major_cov=22/38	major_frequency=7.317e-01	minor_base=C	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.683e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=22/38	total_cov=47/38
RA	189	.	1	1331037	0	G	T	bias_e_value=103.121	bias_p_value=4.90415e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=331.8	fisher_strand_p_value=3.6253e-06	frequency=2.018e-01	ks_quality_p_value=1	major_base=G	major_cov=44/43	major_frequency=7.982e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.018e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=44/43	total_cov=66/43
RA	190	.	1	1335573	0	T	C	bias_e_value=0.000131502	bias_p_value=6.25392e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.5	fisher_strand_p_value=2.24791e-12	frequency=2.159e-01	ks_quality_p_value=1	major_base=T	major_cov=59/10	major_frequency=7.841e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.159e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=59/10	total_cov=60/29
RA	191	.	1	1335582	0	C	A	bias_e_value=7.26893e-06	bias_p_value=3.45692e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.1	fisher_strand_p_value=6.33195e-13	frequency=2.308e-01	ks_quality_p_value=0.177148	major_base=C	major_cov=54/6	major_frequency=7.692e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.308e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=54/6	total_cov=54/25
RA	192	.	1	1335597	0	G	A	bias_e_value=0.000269867	bias_p_value=1.28342e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.3	fisher_strand_p_value=1.81262e-11	frequency=2.222e-01	ks_quality_p_value=0.261513	major_base=G	major_cov=50/6	major_frequency=7.778e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.222e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=50/6	total_cov=51/24
RA	193	.	1	1348723	0	A	C	bias_e_value=1.03295e-05	bias_p_value=4.91244e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=351.6	fisher_strand_p_value=1.61299e-13	frequency=2.348e-01	ks_quality_p_value=1	major_base=A	major_cov=71/30	major_frequency=7.652e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.348e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=71/30	total_cov=71/61
RA	194	.	1	1358285	0	A	C	bias_e_value=0.000684785	bias_p_value=3.25666e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=339.2	fisher_strand_p_value=1.24741e-11	frequency=2.195e-01	ks_quality_p_value=1	major_base=A	major_cov=66/30	major_frequency=7.805e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.195e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=66/30	total_cov=66/57
RA	195	.	1	1360726	0	G	A	bias_e_value=1.57252e-07	bias_p_value=7.47849e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.8	fisher_strand_p_value=2.15066e-15	frequency=2.178e-01	ks_quality_p_value=1	major_base=G	major_cov=70/9	major_frequency=7.822e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.178e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=70/9	total_cov=70/31
RA	196	.	1	1371340	0	A	T	bias_e_value=0.000400606	bias_p_value=1.90518e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.2	fisher_strand_p_value=7.14497e-12	frequency=3.492e-01	ks_quality_p_value=1	major_base=A	major_cov=35/6	major_frequency=6.508e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.492e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=35/6	total_cov=35/29
RA	197	.	1	1371351	0	G	T	bias_e_value=0.0243982	bias_p_value=1.16031e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.7	fisher_strand_p_value=5.18457e-10	frequency=3.065e-01	ks_quality_p_value=1	major_base=G	major_cov=35/8	major_frequency=6.935e-01	minor_base=T	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.065e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=35/8	total_cov=35/27
RA	198	.	1	1371357	0	C	A	bias_e_value=0.016429	bias_p_value=7.81322e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.7	fisher_strand_p_value=3.62097e-10	frequency=3.016e-01	ks_quality_p_value=0.946642	major_base=C	major_cov=36/8	major_frequency=6.984e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.016e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=36/8	total_cov=36/27
RA	199	.	1	1372908	0	G	C	bias_e_value=0.000354545	bias_p_value=1.68612e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.4	fisher_strand_p_value=6.29351e-12	frequency=2.805e-01	ks_quality_p_value=1	major_base=G	major_cov=12/47	major_frequency=7.195e-01	minor_base=C	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.805e-01	polymorphism_score=22.8	prediction=polymorphism	ref_cov=12/47	total_cov=35/47
RA	200	.	1	1373604	0	A	C	bias_e_value=0.0805728	bias_p_value=3.83184e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.4	fisher_strand_p_value=1.81363e-09	frequency=3.067e-01	ks_quality_p_value=1	major_base=A	major_cov=37/15	major_frequency=6.933e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.067e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=37/15	total_cov=37/39
RA	201	.	1	1378660	0	T	A	bias_e_value=1.13736e-07	bias_p_value=5.40898e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=359.3	fisher_strand_p_value=1.54073e-15	frequency=2.119e-01	ks_quality_p_value=1	major_base=T	major_cov=78/15	major_frequency=7.881e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.119e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=78/15	total_cov=78/40
RA	202	.	1	1378665	0	G	A	bias_e_value=3.97528e-09	bias_p_value=1.89054e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.6	fisher_strand_p_value=4.90362e-17	frequency=2.308e-01	ks_quality_p_value=1	major_base=G	major_cov=77/13	major_frequency=7.692e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.308e-01	polymorphism_score=27.1	prediction=polymorphism	ref_cov=77/13	total_cov=77/40
RA	203	.	1	1378687	0	A	C	bias_e_value=7.01906e-14	bias_p_value=3.33808e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.9	fisher_strand_p_value=6.70926e-22	frequency=2.925e-01	ks_quality_p_value=1	major_base=A	major_cov=70/5	major_frequency=7.075e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.925e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=70/5	total_cov=70/37
RA	204	.	1	1391330	0	T	G	bias_e_value=0.382743	bias_p_value=1.82023e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.4	fisher_strand_p_value=9.33978e-09	frequency=2.451e-01	ks_quality_p_value=1	major_base=T	major_cov=30/47	major_frequency=7.549e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.451e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=30/47	total_cov=56/47
RA	205	.	1	1392114	0	C	T	bias_e_value=0.958567	bias_p_value=4.5587e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.3	fisher_strand_p_value=2.46151e-08	frequency=2.088e-01	ks_quality_p_value=1	major_base=C	major_cov=49/23	major_frequency=7.912e-01	minor_base=T	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.088e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=49/23	total_cov=49/43
RA	206	.	1	1392155	0	G	T	bias_e_value=0.0142205	bias_p_value=6.7629e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.3	fisher_strand_p_value=2.94745e-10	frequency=2.637e-01	ks_quality_p_value=1	major_base=G	major_cov=47/20	major_frequency=7.363e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.637e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=47/20	total_cov=47/44
RA	207	.	1	1392161	0	G	A	bias_e_value=3.82261	bias_p_value=1.81793e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.5	fisher_strand_p_value=1.06597e-07	frequency=2.065e-01	ks_quality_p_value=1	major_base=G	major_cov=47/26	major_frequency=7.935e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.065e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=47/26	total_cov=47/45
RA	208	.	1	1405364	0	A	C	bias_e_value=0.0441225	bias_p_value=2.09835e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.0	fisher_strand_p_value=9.64335e-10	frequency=3.519e-01	ks_quality_p_value=1	major_base=A	major_cov=29/6	major_frequency=6.481e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.519e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=29/6	total_cov=29/25
RA	209	.	1	1405369	0	C	T	bias_e_value=0.000632876	bias_p_value=3.0098e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.7	fisher_strand_p_value=1.14925e-11	frequency=4.000e-01	ks_quality_p_value=1	major_base=C	major_cov=29/4	major_frequency=6.000e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=4.000e-01	polymorphism_score=23.1	prediction=polymorphism	ref_cov=29/4	total_cov=29/26
RA	210	.	1	1405375	0	G	A	bias_e_value=1.7379e-05	bias_p_value=8.26502e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.1	fisher_strand_p_value=2.76261e-13	frequency=4.259e-01	ks_quality_p_value=1	major_base=G	major_cov=29/2	major_frequency=5.741e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=4.259e-01	polymorphism_score=20.5	prediction=polymorphism	ref_cov=29/2	total_cov=29/25
RA	211	.	1	1432017	0	C	A	bias_e_value=0.0205966	bias_p_value=9.79524e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.7	fisher_strand_p_value=4.34235e-10	frequency=3.165e-01	ks_quality_p_value=1	major_base=C	major_cov=38/16	major_frequency=6.835e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.165e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=38/16	total_cov=38/42
RA	212	.	1	1432033	0	T	C	bias_e_value=0.000282009	bias_p_value=1.34116e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.1	fisher_strand_p_value=4.9619e-12	frequency=3.590e-01	ks_quality_p_value=1	major_base=T	major_cov=38/12	major_frequency=6.410e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.590e-01	polymorphism_score=28.1	prediction=polymorphism	ref_cov=38/12	total_cov=38/42
RA	213	.	1	1457698	0	C	T	bias_e_value=3.97457e-09	bias_p_value=1.8902e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.4	fisher_strand_p_value=4.95406e-17	frequency=3.333e-01	ks_quality_p_value=0.989637	major_base=C	major_cov=54/10	major_frequency=6.667e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.333e-01	polymorphism_score=31.0	prediction=polymorphism	ref_cov=54/10	total_cov=54/43
RA	214	.	1	1457701	0	G	A	bias_e_value=0.0513481	bias_p_value=2.44198e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.2	fisher_strand_p_value=1.13052e-09	frequency=2.234e-01	ks_quality_p_value=1	major_base=G	major_cov=52/21	major_frequency=7.766e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.234e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=52/21	total_cov=52/43
RA	215	.	1	1476790	0	A	C	bias_e_value=0.000100275	bias_p_value=4.76881e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.0	fisher_strand_p_value=1.69695e-12	frequency=3.191e-01	ks_quality_p_value=1	major_base=A	major_cov=47/17	major_frequency=6.809e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.191e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=47/17	total_cov=47/47
RA	216	.	1	1503969	0	G	T	bias_e_value=0.255079	bias_p_value=1.21309e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.0	fisher_strand_p_value=6.09089e-09	frequency=2.778e-01	ks_quality_p_value=1	major_base=G	major_cov=24/41	major_frequency=7.222e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=24/41	total_cov=49/41
RA	217	.	1	1503982	0	C	T	bias_e_value=0.00355228	bias_p_value=1.68937e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.6	fisher_strand_p_value=6.92559e-11	frequency=3.021e-01	ks_quality_p_value=1	major_base=C	major_cov=22/45	major_frequency=6.979e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.021e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=22/45	total_cov=51/45
RA	218	.	1	1504022	0	G	T	bias_e_value=99.1912	bias_p_value=4.71728e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.9	fisher_strand_p_value=3.49744e-06	frequency=2.174e-01	ks_quality_p_value=0.99398	major_base=G	major_cov=33/39	major_frequency=7.826e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.174e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=33/39	total_cov=53/39
RA	219	.	1	1520662	0	C	T	bias_e_value=1.09931	bias_p_value=5.22801e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.0	fisher_strand_p_value=3.02129e-08	frequency=2.703e-01	ks_quality_p_value=0.941708	major_base=C	major_cov=42/39	major_frequency=7.297e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.703e-01	polymorphism_score=23.1	prediction=polymorphism	ref_cov=42/39	total_cov=42/71
RA	220	.	1	1520691	0	C	T	bias_e_value=0.0408701	bias_p_value=1.94368e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.6	fisher_strand_p_value=8.96072e-10	frequency=2.768e-01	ks_quality_p_value=0.993189	major_base=C	major_cov=47/34	major_frequency=7.232e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.768e-01	polymorphism_score=25.0	prediction=polymorphism	ref_cov=47/34	total_cov=47/66
RA	221	.	1	1520694	0	T	A	bias_e_value=0.756842	bias_p_value=3.59935e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.2	fisher_strand_p_value=1.91765e-08	frequency=2.456e-01	ks_quality_p_value=1	major_base=T	major_cov=47/39	major_frequency=7.544e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.456e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=47/39	total_cov=47/67
RA	222	.	1	1520700	0	G	A	bias_e_value=0.288926	bias_p_value=1.37406e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.7	fisher_strand_p_value=6.94486e-09	frequency=2.632e-01	ks_quality_p_value=1	major_base=G	major_cov=47/37	major_frequency=7.368e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.632e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=47/37	total_cov=47/67
RA	223	.	1	1520711	0	C	T	bias_e_value=2.17739e-05	bias_p_value=1.03551e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.3	fisher_strand_p_value=3.48843e-13	frequency=3.540e-01	ks_quality_p_value=1	major_base=C	major_cov=47/26	major_frequency=6.460e-01	minor_base=T	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.540e-01	polymorphism_score=45.5	prediction=polymorphism	ref_cov=47/26	total_cov=47/67
RA	224	.	1	1520742	0	G	A	bias_e_value=0.778303	bias_p_value=3.70141e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.5	fisher_strand_p_value=1.97513e-08	frequency=2.952e-01	ks_quality_p_value=1	major_base=G	major_cov=39/35	major_frequency=7.048e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.952e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=39/35	total_cov=39/66
RA	225	.	1	1520748	0	A	C	bias_e_value=9.77843e-10	bias_p_value=4.65037e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.5	fisher_strand_p_value=1.16279e-17	frequency=4.679e-01	ks_quality_p_value=1	major_base=A	major_cov=43/15	major_frequency=5.321e-01	minor_base=C	minor_cov=0/51	new_cov=0/51	polymorphism_frequency=4.679e-01	polymorphism_score=37.4	prediction=polymorphism	ref_cov=43/15	total_cov=43/66
RA	226	.	1	1533811	0	C	A	bias_e_value=5.01032	bias_p_value=2.38278e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.8	fisher_strand_p_value=1.45637e-07	frequency=2.234e-01	ks_quality_p_value=0.975815	major_base=C	major_cov=44/29	major_frequency=7.766e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.234e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=44/29	total_cov=44/50
RA	227	.	1	1533845	0	A	T	bias_e_value=0.0027656	bias_p_value=1.31525e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.5	fisher_strand_p_value=5.33479e-11	frequency=3.043e-01	ks_quality_p_value=1	major_base=A	major_cov=44/20	major_frequency=6.957e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.043e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=44/20	total_cov=44/48
RA	228	.	1	1533858	0	T	C	bias_e_value=0.00247162	bias_p_value=1.17544e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.5	fisher_strand_p_value=4.74517e-11	frequency=3.118e-01	ks_quality_p_value=1	major_base=T	major_cov=44/20	major_frequency=6.882e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.118e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=44/20	total_cov=44/51
RA	229	.	1	1534548	0	C	T	bias_e_value=4.90167e-06	bias_p_value=2.33111e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.6	fisher_strand_p_value=7.4653e-14	frequency=2.442e-01	ks_quality_p_value=1	major_base=C	major_cov=57/8	major_frequency=7.558e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.442e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=57/8	total_cov=57/29
RA	230	.	1	1546157	0	A	T	bias_e_value=0.0465587	bias_p_value=2.21421e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.1	fisher_strand_p_value=1.02022e-09	frequency=2.128e-01	ks_quality_p_value=1	major_base=A	major_cov=20/54	major_frequency=7.872e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.128e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=20/54	total_cov=40/54
RA	231	.	1	1546166	0	T	G	bias_e_value=0.000353509	bias_p_value=1.6812e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.8	fisher_strand_p_value=6.2744e-12	frequency=2.258e-01	ks_quality_p_value=1	major_base=T	major_cov=14/58	major_frequency=7.742e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.258e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=14/58	total_cov=43/58
RA	232	.	1	1546206	0	T	A	bias_e_value=0.000299482	bias_p_value=1.42426e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=315.9	fisher_strand_p_value=5.28153e-12	frequency=2.294e-01	ks_quality_p_value=1	major_base=T	major_cov=22/62	major_frequency=7.706e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.294e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=22/62	total_cov=47/62
RA	233	.	1	1555330	0	C	T	bias_e_value=2.90147	bias_p_value=1.37987e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.3	fisher_strand_p_value=8.02079e-08	frequency=2.697e-01	ks_quality_p_value=0.991737	major_base=C	major_cov=38/27	major_frequency=7.303e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.697e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=38/27	total_cov=38/51
RA	234	.	1	1555346	0	A	C	bias_e_value=0.000179083	bias_p_value=8.51672e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.6	fisher_strand_p_value=3.09692e-12	frequency=3.704e-01	ks_quality_p_value=1	major_base=A	major_cov=38/13	major_frequency=6.296e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.704e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=38/13	total_cov=38/44
RA	235	.	1	1555360	0	A	C	bias_e_value=2.59179e-10	bias_p_value=1.23259e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.7	fisher_strand_p_value=2.98056e-18	frequency=4.512e-01	ks_quality_p_value=1	major_base=A	major_cov=40/5	major_frequency=5.488e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=4.512e-01	polymorphism_score=29.6	prediction=polymorphism	ref_cov=40/5	total_cov=40/42
RA	236	.	1	1560006	0	T	A	bias_e_value=1.2596e-08	bias_p_value=5.99035e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.3	fisher_strand_p_value=1.60301e-16	frequency=3.068e-01	ks_quality_p_value=1	major_base=T	major_cov=7/54	major_frequency=6.932e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.068e-01	polymorphism_score=23.6	prediction=polymorphism	ref_cov=7/54	total_cov=34/54
RA	237	.	1	1560037	0	G	A	bias_e_value=1.77189e-07	bias_p_value=8.42665e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.7	fisher_strand_p_value=2.43193e-15	frequency=2.889e-01	ks_quality_p_value=1	major_base=G	major_cov=9/55	major_frequency=7.111e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.889e-01	polymorphism_score=28.0	prediction=polymorphism	ref_cov=9/55	total_cov=35/55
RA	238	.	1	1560043	0	G	C	bias_e_value=0.00102472	bias_p_value=4.87332e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.8	fisher_strand_p_value=1.89778e-11	frequency=2.105e-01	ks_quality_p_value=0.999649	major_base=G	major_cov=15/60	major_frequency=7.895e-01	minor_base=C	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.105e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=15/60	total_cov=36/60
RA	239	.	1	1591042	0	T	A	bias_e_value=0.662218	bias_p_value=3.14934e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.8	fisher_strand_p_value=1.66538e-08	frequency=2.667e-01	ks_quality_p_value=1	major_base=T	major_cov=41/25	major_frequency=7.333e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.667e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=41/25	total_cov=41/49
RA	240	.	1	1652897	0	T	G	bias_e_value=0.145071	bias_p_value=6.89922e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.6	fisher_strand_p_value=3.3638e-09	frequency=3.067e-01	ks_quality_p_value=1	major_base=T	major_cov=16/36	major_frequency=6.933e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.067e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=16/36	total_cov=39/36
RA	241	.	1	1663223	0	G	T	bias_e_value=9.45935e-09	bias_p_value=4.49863e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=379.0	fisher_strand_p_value=1.19442e-16	frequency=2.149e-01	ks_quality_p_value=1	major_base=G	major_cov=14/81	major_frequency=7.851e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.149e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=14/81	total_cov=40/81
RA	242	.	1	1663239	0	G	T	bias_e_value=5.09952e-07	bias_p_value=2.4252e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=377.3	fisher_strand_p_value=7.22624e-15	frequency=2.017e-01	ks_quality_p_value=1	major_base=G	major_cov=16/79	major_frequency=7.983e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.017e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=16/79	total_cov=41/79
RA	243	.	1	1663503	0	G	A	bias_e_value=0.000437575	bias_p_value=2.081e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=383.4	fisher_strand_p_value=7.83127e-12	frequency=2.029e-01	ks_quality_p_value=1	major_base=G	major_cov=74/36	major_frequency=7.971e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.029e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=74/36	total_cov=74/64
RA	244	.	1	1663529	0	G	A	bias_e_value=1.07623e-10	bias_p_value=5.11827e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.1	fisher_strand_p_value=1.21129e-18	frequency=2.810e-01	ks_quality_p_value=1	major_base=G	major_cov=72/15	major_frequency=7.190e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.810e-01	polymorphism_score=23.3	prediction=polymorphism	ref_cov=72/15	total_cov=72/49
RA	245	.	1	1668598	0	A	C	bias_e_value=0.000307326	bias_p_value=1.46157e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.7	fisher_strand_p_value=5.42527e-12	frequency=3.026e-01	ks_quality_p_value=1	major_base=A	major_cov=43/10	major_frequency=6.974e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.026e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=43/10	total_cov=43/33
RA	246	.	1	1670058	0	C	T	bias_e_value=0.0171897	bias_p_value=8.17501e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.2	fisher_strand_p_value=3.59395e-10	frequency=2.436e-01	ks_quality_p_value=1	major_base=C	major_cov=9/50	major_frequency=7.564e-01	minor_base=T	minor_cov=18/1	new_cov=18/1	polymorphism_frequency=2.436e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=9/50	total_cov=27/51
RA	247	.	1	1670063	0	C	T	bias_e_value=3.59029e-06	bias_p_value=1.70745e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.7	fisher_strand_p_value=5.41232e-14	frequency=2.692e-01	ks_quality_p_value=1	major_base=C	major_cov=6/51	major_frequency=7.308e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.692e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=6/51	total_cov=27/51
RA	248	.	1	1671305	0	C	A	bias_e_value=5.48682	bias_p_value=2.60939e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.9	fisher_strand_p_value=1.56532e-07	frequency=2.143e-01	ks_quality_p_value=1	major_base=C	major_cov=46/31	major_frequency=7.857e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.143e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=46/31	total_cov=46/52
RA	249	.	1	1691505	0	A	C	bias_e_value=20.9084	bias_p_value=9.94351e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.9	fisher_strand_p_value=6.52346e-07	frequency=3.404e-01	ks_quality_p_value=1	major_base=A	major_cov=23/8	major_frequency=6.596e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=3.404e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=23/8	total_cov=23/24
RA	250	.	1	1703569	0	C	T	bias_e_value=0.140952	bias_p_value=6.70331e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.4	fisher_strand_p_value=3.26346e-09	frequency=3.226e-01	ks_quality_p_value=1	major_base=C	major_cov=32/10	major_frequency=6.774e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=3.226e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=32/10	total_cov=32/30
RA	251	.	1	1714796	0	T	G	bias_e_value=1.46459e-07	bias_p_value=6.9652e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.2	fisher_strand_p_value=1.99884e-15	frequency=3.016e-01	ks_quality_p_value=1	major_base=T	major_cov=25/63	major_frequency=6.984e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.016e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=25/63	total_cov=64/63
RA	252	.	1	1714996	0	T	A	bias_e_value=0.0024309	bias_p_value=1.15607e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=375.0	fisher_strand_p_value=4.66373e-11	frequency=2.077e-01	ks_quality_p_value=1	major_base=T	major_cov=68/35	major_frequency=7.923e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.077e-01	polymorphism_score=19.3	prediction=polymorphism	ref_cov=68/35	total_cov=68/62
RA	253	.	1	1724390	0	T	G	bias_e_value=9.21063e-08	bias_p_value=4.38034e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=318.1	fisher_strand_p_value=1.24006e-15	frequency=2.932e-01	ks_quality_p_value=1	major_base=T	major_cov=28/66	major_frequency=7.068e-01	minor_base=G	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.932e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=28/66	total_cov=67/66
RA	254	.	1	1754540	0	A	T	bias_e_value=2.70598e-05	bias_p_value=1.2869e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=326.7	fisher_strand_p_value=4.3684e-13	frequency=2.054e-01	ks_quality_p_value=1	major_base=A	major_cov=18/71	major_frequency=7.946e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.054e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=18/71	total_cov=41/71
RA	255	.	1	1754555	0	A	T	bias_e_value=0.000676442	bias_p_value=3.21698e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=284.7	fisher_strand_p_value=1.23161e-11	frequency=2.427e-01	ks_quality_p_value=1	major_base=A	major_cov=21/57	major_frequency=7.573e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.427e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=21/57	total_cov=46/57
RA	256	.	1	1754565	0	G	T	bias_e_value=0.0869823	bias_p_value=4.13666e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=323.2	fisher_strand_p_value=1.96538e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=26/58	major_frequency=8.000e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.000e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=26/58	total_cov=47/58
RA	257	.	1	1757446	0	T	G	bias_e_value=8178.36	bias_p_value=0.00388942	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.9	fisher_strand_p_value=0.000446317	frequency=3.651e-01	ks_quality_p_value=1	major_base=T	major_cov=25/15	major_frequency=6.349e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.651e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=25/15	total_cov=48/15
RA	258	.	1	1757453	0	C	T	bias_e_value=490.298	bias_p_value=0.000233173	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.2	fisher_strand_p_value=1.97024e-05	frequency=5.000e-01	ks_quality_p_value=1	major_base=C	major_cov=18/14	major_frequency=5.000e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=5.000e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=18/14	total_cov=50/14
RA	259	.	1	1757486	0	C	G	bias_e_value=10296.9	bias_p_value=0.00489696	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.2	fisher_strand_p_value=0.000579265	frequency=3.492e-01	ks_quality_p_value=1	major_base=C	major_cov=26/15	major_frequency=6.508e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.492e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=26/15	total_cov=48/15
RA	260	.	1	1757904	0	A	C	bias_e_value=0.000593273	bias_p_value=2.82146e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.6	fisher_strand_p_value=1.07457e-11	frequency=2.991e-01	ks_quality_p_value=1	major_base=A	major_cov=51/31	major_frequency=7.009e-01	minor_base=C	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.991e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=51/31	total_cov=51/67
RA	261	.	1	1768446	0	A	T	bias_e_value=5.38217e-07	bias_p_value=2.55962e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.7	fisher_strand_p_value=7.63942e-15	frequency=2.375e-01	ks_quality_p_value=1	major_base=A	major_cov=4/57	major_frequency=7.625e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.375e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=4/57	total_cov=23/57
RA	262	.	1	1780979	0	C	G	bias_e_value=0.000640585	bias_p_value=3.04646e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.5	fisher_strand_p_value=1.1638e-11	frequency=2.700e-01	ks_quality_p_value=1	major_base=C	major_cov=52/21	major_frequency=7.300e-01	minor_base=G	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.700e-01	polymorphism_score=25.0	prediction=polymorphism	ref_cov=52/21	total_cov=52/48
RA	263	.	1	1780984	0	G	A	bias_e_value=3.88699e-06	bias_p_value=1.84855e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.8	fisher_strand_p_value=5.87486e-14	frequency=3.010e-01	ks_quality_p_value=1	major_base=G	major_cov=54/18	major_frequency=6.990e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.010e-01	polymorphism_score=25.1	prediction=polymorphism	ref_cov=54/18	total_cov=54/49
RA	264	.	1	1785139	0	T	A	bias_e_value=6.31082e-13	bias_p_value=3.00126e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.2	fisher_strand_p_value=6.31698e-21	frequency=3.535e-01	ks_quality_p_value=1	major_base=T	major_cov=6/58	major_frequency=6.465e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.535e-01	polymorphism_score=32.0	prediction=polymorphism	ref_cov=6/58	total_cov=41/58
RA	265	.	1	1785162	0	T	G	bias_e_value=1.6201e-09	bias_p_value=7.70476e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=293.8	fisher_strand_p_value=1.9518e-17	frequency=2.621e-01	ks_quality_p_value=1	major_base=T	major_cov=9/67	major_frequency=7.379e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.621e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=9/67	total_cov=41/67
RA	266	.	1	1785210	0	T	A	bias_e_value=2.07179e-06	bias_p_value=9.85291e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=334.1	fisher_strand_p_value=3.06799e-14	frequency=2.288e-01	ks_quality_p_value=1	major_base=T	major_cov=20/71	major_frequency=7.712e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.288e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=20/71	total_cov=47/71
RA	267	.	1	1785899	0	T	G	bias_e_value=1.04288e-14	bias_p_value=4.95969e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.5	fisher_strand_p_value=9.59351e-23	frequency=4.016e-01	ks_quality_p_value=1	major_base=T	major_cov=12/61	major_frequency=5.984e-01	minor_base=G	minor_cov=49/0	new_cov=49/0	polymorphism_frequency=4.016e-01	polymorphism_score=41.8	prediction=polymorphism	ref_cov=12/61	total_cov=61/61
RA	268	.	1	1785908	0	A	G	bias_e_value=0.00590098	bias_p_value=2.80636e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.3	fisher_strand_p_value=1.17599e-10	frequency=2.269e-01	ks_quality_p_value=1	major_base=A	major_cov=32/60	major_frequency=7.731e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.269e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=32/60	total_cov=59/60
RA	269	.	1	1785914	0	T	G	bias_e_value=9.35929e-12	bias_p_value=4.45104e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.1	fisher_strand_p_value=9.94544e-20	frequency=3.846e-01	ks_quality_p_value=1	major_base=T	major_cov=15/57	major_frequency=6.154e-01	minor_base=G	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=3.846e-01	polymorphism_score=27.7	prediction=polymorphism	ref_cov=15/57	total_cov=61/57
RA	270	.	1	1785936	0	A	T	bias_e_value=1.42752e-05	bias_p_value=6.78894e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=304.6	fisher_strand_p_value=2.25389e-13	frequency=2.581e-01	ks_quality_p_value=1	major_base=A	major_cov=28/64	major_frequency=7.419e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.581e-01	polymorphism_score=25.8	prediction=polymorphism	ref_cov=28/64	total_cov=60/64
RA	271	.	1	1803584	0	T	A	bias_e_value=40.7227	bias_p_value=1.93667e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.9	fisher_strand_p_value=1.33306e-06	frequency=3.043e-01	ks_quality_p_value=1	major_base=T	major_cov=24/8	major_frequency=6.957e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=3.043e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=24/8	total_cov=24/22
RA	272	.	1	1828993	0	G	T	bias_e_value=0.00477506	bias_p_value=2.2709e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.3	fisher_strand_p_value=9.42881e-11	frequency=2.778e-01	ks_quality_p_value=1	major_base=G	major_cov=3/36	major_frequency=7.222e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.778e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=3/36	total_cov=18/36
RA	273	.	1	1829025	0	C	T	bias_e_value=0.00587918	bias_p_value=2.79599e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.3	fisher_strand_p_value=1.17146e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=3/39	major_frequency=7.500e-01	minor_base=T	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.500e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=3/39	total_cov=17/39
RA	274	.	1	1873469	0	G	T	bias_e_value=0.0174744	bias_p_value=8.31038e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.8	fisher_strand_p_value=3.68222e-10	frequency=2.692e-01	ks_quality_p_value=0.99294	major_base=G	major_cov=49/27	major_frequency=7.308e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.692e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=49/27	total_cov=49/55
RA	275	.	1	1873479	0	A	C	bias_e_value=2.50861e-07	bias_p_value=1.19303e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.4	fisher_strand_p_value=3.47903e-15	frequency=3.776e-01	ks_quality_p_value=1	major_base=A	major_cov=46/15	major_frequency=6.224e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.776e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=46/15	total_cov=46/52
RA	276	.	1	1905448	0	G	T	bias_e_value=1.07056e-05	bias_p_value=5.09131e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=334.9	fisher_strand_p_value=1.67375e-13	frequency=2.273e-01	ks_quality_p_value=1	major_base=G	major_cov=18/67	major_frequency=7.727e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.273e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=18/67	total_cov=43/67
RA	277	.	1	1917863	0	C	A	bias_e_value=0.828231	bias_p_value=3.93886e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.8	fisher_strand_p_value=2.10923e-08	frequency=2.174e-01	ks_quality_p_value=1	major_base=C	major_cov=48/24	major_frequency=7.826e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.174e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=48/24	total_cov=48/44
RA	278	.	1	1917882	0	G	A	bias_e_value=0.0115206	bias_p_value=5.47888e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.6	fisher_strand_p_value=2.36516e-10	frequency=2.245e-01	ks_quality_p_value=1	major_base=G	major_cov=55/21	major_frequency=7.755e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.245e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=55/21	total_cov=55/43
RA	279	.	1	1917892	0	C	A	bias_e_value=6.9892e-05	bias_p_value=3.32389e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.0	fisher_strand_p_value=1.16724e-12	frequency=2.647e-01	ks_quality_p_value=1	major_base=C	major_cov=56/19	major_frequency=7.353e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.647e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=56/19	total_cov=56/46
RA	280	.	1	1917908	0	C	A	bias_e_value=1.24467e-05	bias_p_value=5.91935e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.4	fisher_strand_p_value=1.97502e-13	frequency=3.196e-01	ks_quality_p_value=0.990362	major_base=C	major_cov=49/17	major_frequency=6.804e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.196e-01	polymorphism_score=27.0	prediction=polymorphism	ref_cov=49/17	total_cov=49/48
RA	281	.	1	1939063	0	G	A	bias_e_value=4.03609e-07	bias_p_value=1.91946e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.8	fisher_strand_p_value=5.67852e-15	frequency=3.008e-01	ks_quality_p_value=1	major_base=G	major_cov=61/25	major_frequency=6.992e-01	minor_base=A	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=3.008e-01	polymorphism_score=37.3	prediction=polymorphism	ref_cov=61/25	total_cov=61/62
RA	282	.	1	1939068	0	A	C	bias_e_value=2.65917e-06	bias_p_value=1.26463e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=292.0	fisher_strand_p_value=3.96966e-14	frequency=3.000e-01	ks_quality_p_value=1	major_base=A	major_cov=58/26	major_frequency=7.000e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.000e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=58/26	total_cov=58/62
RA	283	.	1	1939088	0	A	C	bias_e_value=1.81507e-18	bias_p_value=8.63201e-25	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.7	fisher_strand_p_value=1.4265e-26	frequency=4.790e-01	ks_quality_p_value=1	major_base=A	major_cov=55/7	major_frequency=5.210e-01	minor_base=C	minor_cov=0/57	new_cov=0/57	polymorphism_frequency=4.790e-01	polymorphism_score=45.1	prediction=polymorphism	ref_cov=55/7	total_cov=55/64
RA	284	.	1	1940014	0	A	T	bias_e_value=5.56164e-06	bias_p_value=2.64498e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=322.4	fisher_strand_p_value=8.506e-14	frequency=2.130e-01	ks_quality_p_value=1	major_base=A	major_cov=70/15	major_frequency=7.870e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.130e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=70/15	total_cov=70/40
RA	285	.	1	1947363	0	C	T	bias_e_value=0.0053108	bias_p_value=2.52568e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.6	fisher_strand_p_value=1.05352e-10	frequency=2.019e-01	ks_quality_p_value=1	major_base=C	major_cov=21/62	major_frequency=7.981e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.019e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=21/62	total_cov=42/62
RA	286	.	1	1997603	0	T	G	bias_e_value=1.19824e-12	bias_p_value=5.6985e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=264.3	fisher_strand_p_value=1.21617e-20	frequency=3.607e-01	ks_quality_p_value=1	major_base=T	major_cov=15/63	major_frequency=6.393e-01	minor_base=G	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=3.607e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=15/63	total_cov=61/63
RA	287	.	1	1997610	0	T	A	bias_e_value=0.000115845	bias_p_value=5.50929e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.7	fisher_strand_p_value=1.97095e-12	frequency=2.362e-01	ks_quality_p_value=1	major_base=T	major_cov=31/66	major_frequency=7.638e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.362e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=31/66	total_cov=61/66
RA	288	.	1	2018366	0	T	G	bias_e_value=2.70377e-11	bias_p_value=1.28584e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=324.6	fisher_strand_p_value=2.94451e-19	frequency=3.143e-01	ks_quality_p_value=1	major_base=T	major_cov=24/72	major_frequency=6.857e-01	minor_base=G	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=3.143e-01	polymorphism_score=32.3	prediction=polymorphism	ref_cov=24/72	total_cov=69/72
RA	289	.	1	2028810	0	G	C	bias_e_value=1.77406e-08	bias_p_value=8.43699e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=368.9	fisher_strand_p_value=2.27919e-16	frequency=2.049e-01	ks_quality_p_value=1	major_base=G	major_cov=83/14	major_frequency=7.951e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.049e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=83/14	total_cov=83/39
RA	290	.	1	2028828	0	G	A	bias_e_value=3.12771e-13	bias_p_value=1.48746e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=328.9	fisher_strand_p_value=3.08422e-21	frequency=2.400e-01	ks_quality_p_value=1	major_base=G	major_cov=86/9	major_frequency=7.600e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.400e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=86/9	total_cov=86/39
RA	291	.	1	2028852	0	A	C	bias_e_value=1.21426e-10	bias_p_value=5.7747e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=371.6	fisher_strand_p_value=1.37065e-18	frequency=2.213e-01	ks_quality_p_value=1	major_base=A	major_cov=84/11	major_frequency=7.787e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.213e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=84/11	total_cov=84/38
RA	292	.	1	2029352	0	T	C	bias_e_value=5.33821e-09	bias_p_value=2.53871e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=354.8	fisher_strand_p_value=6.63694e-17	frequency=2.484e-01	ks_quality_p_value=1	major_base=T	major_cov=83/32	major_frequency=7.516e-01	minor_base=C	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.484e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=83/32	total_cov=83/70
RA	293	.	1	2100964	0	C	T	bias_e_value=1.49752e-06	bias_p_value=7.12181e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.8	fisher_strand_p_value=2.19469e-14	frequency=2.637e-01	ks_quality_p_value=1	major_base=C	major_cov=10/57	major_frequency=7.363e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.637e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=10/57	total_cov=34/57
RA	294	.	1	2100973	0	G	A	bias_e_value=0.00082738	bias_p_value=3.93481e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.4	fisher_strand_p_value=1.51861e-11	frequency=2.065e-01	ks_quality_p_value=1	major_base=G	major_cov=13/60	major_frequency=7.935e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.065e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=13/60	total_cov=32/60
RA	295	.	2	118	0	T	C	bias_e_value=1.94625e-06	bias_p_value=9.25587e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.1	fisher_strand_p_value=2.87631e-14	frequency=4.815e-01	ks_quality_p_value=1	major_base=T	major_cov=1/27	major_frequency=5.185e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=4.815e-01	polymorphism_score=19.4	prediction=polymorphism	ref_cov=1/27	total_cov=27/27
RA	296	.	2	155	0	G	C	bias_e_value=6.33767	bias_p_value=3.01403e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.1	fisher_strand_p_value=1.82485e-07	frequency=2.836e-01	ks_quality_p_value=1	major_base=G	major_cov=16/32	major_frequency=7.164e-01	minor_base=C	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=16/32	total_cov=35/32
RA	297	.	2	173	0	A	C	bias_e_value=0.0235936	bias_p_value=1.12205e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.0	fisher_strand_p_value=5.00574e-10	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=13/35	major_frequency=6.667e-01	minor_base=C	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.333e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=13/35	total_cov=37/35
MC	298	.	1	1685027	1686554	0	0	left_inside_cov=32	left_outside_cov=38	right_inside_cov=35	right_outside_cov=36
JC	299	.	1	1	1	2	196	-1	0	alignment_overlap=0	coverage_minus=42	coverage_plus=49	flanking_left=251	flanking_right=196	frequency=1	junction_possible_overlap_registers=223	key=1__1__1__2__196__-1__0____251__196__0__0	max_left=249	max_left_minus=238	max_left_plus=249	max_min_left=115	max_min_left_minus=115	max_min_left_plus=100	max_min_right=121	max_min_right_minus=94	max_min_right_plus=121	max_pos_hash_score=446	max_right=196	max_right_minus=196	max_right_plus=196	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=1.15	new_junction_read_count=91	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=223	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=223	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=91
JC	300	.	1	27048	-1	1	27475	-1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.047e-02	junction_possible_overlap_registers=220	key=1__27048__-1__1__27478__-1__3____251__251__0__0	max_left=111	max_left_minus=111	max_left_plus=42	max_min_left=111	max_min_left_minus=111	max_min_left_plus=42	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=440	max_right=206	max_right_minus=144	max_right_plus=206	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.047e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.26	side_1_overlap=3	side_1_possible_overlap_registers=223	side_1_read_count=143	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=220	side_2_read_count=146	side_2_redundant=0	total_non_overlap_reads=3
JC	301	.	1	60558	-1	1	60683	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.131e-02	junction_possible_overlap_registers=215	key=1__60558__-1__1__60691__-1__8____251__251__0__0	max_left=100	max_left_minus=100	max_left_plus=99	max_min_left=74	max_min_left_minus=0	max_min_left_plus=74	max_min_right=94	max_min_right_minus=94	max_min_right_plus=68	max_pos_hash_score=430	max_right=94	max_right_minus=94	max_right_plus=81	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.131e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=8	side_1_possible_overlap_registers=223	side_1_read_count=125	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.42	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=155	side_2_redundant=0	total_non_overlap_reads=3
JC	302	.	1	94733	1	1	95111	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.615e-02	junction_possible_overlap_registers=219	key=1__94733__1__1__95107__1__4____251__251__0__0	max_left=224	max_left_minus=224	max_left_plus=181	max_min_left=101	max_min_left_minus=101	max_min_left_plus=0	max_min_right=104	max_min_right_minus=22	max_min_right_plus=104	max_pos_hash_score=438	max_right=146	max_right_minus=146	max_right_plus=104	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=3.615e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=4	side_1_possible_overlap_registers=223	side_1_read_count=131	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=219	side_2_read_count=138	side_2_redundant=0	total_non_overlap_reads=5
JC	303	.	1	132241	-1	1	132346	-1	0	alignment_overlap=17	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=206	key=1__132241__-1__1__132363__-1__17____251__251__1__1	max_left=108	max_left_minus=35	max_left_plus=108	max_min_left=108	max_min_left_minus=35	max_min_left_plus=108	max_min_right=107	max_min_right_minus=0	max_min_right_plus=107	max_pos_hash_score=412	max_right=196	max_right_minus=196	max_right_plus=109	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	304	.	1	132349	-1	1	132354	-1	0	alignment_overlap=8	coverage_minus=5	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=215	key=1__132349__-1__1__132362__-1__8____251__251__1__1	max_left=161	max_left_minus=161	max_left_plus=26	max_min_left=52	max_min_left_minus=52	max_min_left_plus=26	max_min_right=81	max_min_right_minus=81	max_min_right_plus=0	max_pos_hash_score=430	max_right=225	max_right_minus=225	max_right_plus=221	neg_log10_pos_hash_p_value=6.8	new_junction_coverage=0.07	new_junction_read_count=8	polymorphism_frequency=NA	pos_hash_score=8	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=8	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=8
JC	305	.	1	133177	-1	1	133314	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=220	key=1__133177__-1__1__133317__-1__3____251__251__1__1	max_left=223	max_left_minus=223	max_left_plus=162	max_min_left=117	max_min_left_minus=0	max_min_left_plus=117	max_min_right=86	max_min_right_minus=25	max_min_right_plus=86	max_pos_hash_score=440	max_right=133	max_right_minus=25	max_right_plus=133	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.06	new_junction_read_count=7	polymorphism_frequency=NA	pos_hash_score=5	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	306	.	1	134223	-1	1	134312	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=218	key=1__134223__-1__1__134317__-1__5____251__251__1__1	max_left=245	max_left_minus=245	max_left_plus=197	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=49	max_min_right_minus=49	max_min_right_plus=49	max_pos_hash_score=436	max_right=49	max_right_minus=49	max_right_plus=49	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=5	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	307	.	1	162998	1	1	163307	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.913e-02	junction_possible_overlap_registers=215	key=1__162998__1__1__163299__1__8____251__251__0__0	max_left=143	max_left_minus=0	max_left_plus=143	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=99	max_min_right_minus=0	max_min_right_plus=99	max_pos_hash_score=430	max_right=99	max_right_minus=0	max_right_plus=99	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.913e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=8	side_1_possible_overlap_registers=223	side_1_read_count=112	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	308	.	1	229634	-1	1	229756	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.159e-02	junction_possible_overlap_registers=214	key=1__229634__-1__1__229765__-1__9____251__251__0__0	max_left=143	max_left_minus=143	max_left_plus=116	max_min_left=116	max_min_left_minus=0	max_min_left_plus=116	max_min_right=63	max_min_right_minus=53	max_min_right_plus=63	max_pos_hash_score=428	max_right=121	max_right_minus=53	max_right_plus=121	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.159e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=9	side_1_possible_overlap_registers=223	side_1_read_count=126	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.39	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=151	side_2_redundant=0	total_non_overlap_reads=3
JC	309	.	1	235391	1	1	235618	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.287e-02	junction_possible_overlap_registers=213	key=1__235391__1__1__235608__1__10____251__251__0__0	max_left=216	max_left_minus=206	max_left_plus=216	max_min_left=73	max_min_left_minus=73	max_min_left_plus=4	max_min_right=54	max_min_right_minus=22	max_min_right_plus=54	max_pos_hash_score=426	max_right=237	max_right_minus=108	max_right_plus=237	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=3.287e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=10	side_1_possible_overlap_registers=223	side_1_read_count=151	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.39	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=150	side_2_redundant=0	total_non_overlap_reads=5
JC	310	.	1	279581	1	1	577062	1	0	alignment_overlap=20	coverage_minus=76	coverage_plus=43	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=203	key=1__279581__1__1__577042__1__20____251__251__1__1	max_left=198	max_left_minus=198	max_left_plus=189	max_min_left=115	max_min_left_minus=115	max_min_left_plus=114	max_min_right=112	max_min_right_minus=112	max_min_right_plus=111	max_pos_hash_score=406	max_right=225	max_right_minus=219	max_right_plus=225	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=119	polymorphism_frequency=NA	pos_hash_score=68	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=20	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=119
JC	311	.	1	328457	1	1	328812	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=2.512e-02	junction_possible_overlap_registers=214	key=1__328457__1__1__328803__1__9____251__251__0__0	max_left=209	max_left_minus=209	max_left_plus=0	max_min_left=54	max_min_left_minus=54	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=428	max_right=188	max_right_minus=188	max_right_plus=0	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.512e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=9	side_1_possible_overlap_registers=223	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=135	side_2_redundant=0	total_non_overlap_reads=3
JC	312	.	1	389373	1	1	389467	1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=6.300e-02	junction_possible_overlap_registers=210	key=1__389373__1__1__389454__1__13____251__251__0__0	max_left=219	max_left_minus=196	max_left_plus=219	max_min_left=69	max_min_left_minus=0	max_min_left_plus=69	max_min_right=83	max_min_right_minus=42	max_min_right_plus=83	max_pos_hash_score=420	max_right=115	max_right_minus=42	max_right_plus=115	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.07	new_junction_read_count=7	polymorphism_frequency=6.300e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=13	side_1_possible_overlap_registers=223	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=7
JC	313	.	1	496177	1	1	496316	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.261e-02	junction_possible_overlap_registers=214	key=1__496177__1__1__496307__1__9____251__251__0__0	max_left=122	max_left_minus=122	max_left_plus=122	max_min_left=95	max_min_left_minus=0	max_min_left_plus=95	max_min_right=120	max_min_right_minus=120	max_min_right_plus=115	max_pos_hash_score=428	max_right=147	max_right_minus=120	max_right_plus=147	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.261e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.44	side_1_overlap=9	side_1_possible_overlap_registers=223	side_1_read_count=163	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=3
JC	314	.	1	515551	-1	1	516037	-1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=5.206e-02	junction_possible_overlap_registers=218	key=1__515551__-1__1__516042__-1__5____251__251__0__0	max_left=218	max_left_minus=218	max_left_plus=171	max_min_left=36	max_min_left_minus=36	max_min_left_plus=0	max_min_right=100	max_min_right_minus=40	max_min_right_plus=100	max_pos_hash_score=436	max_right=100	max_right_minus=72	max_right_plus=100	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.07	new_junction_read_count=8	polymorphism_frequency=5.206e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.44	side_1_overlap=5	side_1_possible_overlap_registers=223	side_1_read_count=163	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=132	side_2_redundant=0	total_non_overlap_reads=8
JC	315	.	1	551514	1	1	551816	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.449e-02	junction_possible_overlap_registers=215	key=1__551514__1__1__551808__1__8____251__251__0__0	max_left=147	max_left_minus=125	max_left_plus=147	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=121	max_min_right_minus=121	max_min_right_plus=96	max_pos_hash_score=430	max_right=121	max_right_minus=121	max_right_plus=96	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.449e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=8	side_1_possible_overlap_registers=223	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=132	side_2_redundant=0	total_non_overlap_reads=3
JC	316	.	1	558131	1	1	558354	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.364e-02	junction_possible_overlap_registers=214	key=1__558131__1__1__558345__1__9____251__251__0__0	max_left=178	max_left_minus=178	max_left_plus=118	max_min_left=118	max_min_left_minus=0	max_min_left_plus=118	max_min_right=64	max_min_right_minus=64	max_min_right_plus=0	max_pos_hash_score=428	max_right=179	max_right_minus=64	max_right_plus=179	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.364e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=9	side_1_possible_overlap_registers=223	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=3
JC	317	.	1	589943	1	1	590122	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.230e-02	junction_possible_overlap_registers=214	key=1__589943__1__1__590113__1__9____251__251__0__0	max_left=109	max_left_minus=0	max_left_plus=109	max_min_left=109	max_min_left_minus=0	max_min_left_plus=109	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=428	max_right=153	max_right_minus=0	max_right_plus=153	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.230e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=9	side_1_possible_overlap_registers=223	side_1_read_count=123	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.34	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=145	side_2_redundant=0	total_non_overlap_reads=3
JC	318	.	1	607369	1	1	607722	1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=3.992e-02	junction_possible_overlap_registers=219	key=1__607369__1__1__607718__1__4____251__251__0__0	max_left=192	max_left_minus=0	max_left_plus=192	max_min_left=114	max_min_left_minus=0	max_min_left_plus=114	max_min_right=67	max_min_right_minus=0	max_min_right_plus=67	max_pos_hash_score=438	max_right=132	max_right_minus=0	max_right_plus=132	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.992e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=4	side_1_possible_overlap_registers=223	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=219	side_2_read_count=106	side_2_redundant=0	total_non_overlap_reads=4
JC	319	.	1	617698	1	1	617782	1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.714e-02	junction_possible_overlap_registers=210	key=1__617698__1__1__617769__1__13____251__251__0__0	max_left=206	max_left_minus=59	max_left_plus=206	max_min_left=59	max_min_left_minus=59	max_min_left_plus=0	max_min_right=85	max_min_right_minus=0	max_min_right_plus=85	max_pos_hash_score=420	max_right=146	max_right_minus=146	max_right_plus=85	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.714e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=13	side_1_possible_overlap_registers=223	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=210	side_2_read_count=119	side_2_redundant=0	total_non_overlap_reads=3
JC	320	.	1	633527	-1	1	633829	-1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.829e-02	junction_possible_overlap_registers=221	key=1__633527__-1__1__633831__-1__2____251__251__0__0	max_left=75	max_left_minus=75	max_left_plus=75	max_min_left=75	max_min_left_minus=75	max_min_left_plus=75	max_min_right=58	max_min_right_minus=0	max_min_right_plus=58	max_pos_hash_score=442	max_right=171	max_right_minus=171	max_right_plus=123	neg_log10_pos_hash_p_value=9.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.829e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.93	side_1_overlap=2	side_1_possible_overlap_registers=223	side_1_read_count=105	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=221	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=3
JC	321	.	1	681712	-1	1	681849	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.871e-02	junction_possible_overlap_registers=214	key=1__681712__-1__1__681858__-1__9____251__251__0__0	max_left=219	max_left_minus=219	max_left_plus=119	max_min_left=119	max_min_left_minus=0	max_min_left_plus=119	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=428	max_right=123	max_right_minus=68	max_right_plus=123	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.871e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=9	side_1_possible_overlap_registers=223	side_1_read_count=124	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=3
JC	322	.	1	738456	1	1	738844	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.610e-02	junction_possible_overlap_registers=221	key=1__738456__1__1__738842__1__2____251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=110	max_min_left=110	max_min_left_minus=0	max_min_left_plus=110	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=442	max_right=139	max_right_minus=88	max_right_plus=139	neg_log10_pos_hash_p_value=9.3	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.610e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.09	side_1_overlap=2	side_1_possible_overlap_registers=223	side_1_read_count=123	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=221	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=3
JC	323	.	1	872727	1	1	873075	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.888e-02	junction_possible_overlap_registers=214	key=1__872727__1__1__873066__1__9____251__251__0__0	max_left=197	max_left_minus=197	max_left_plus=82	max_min_left=82	max_min_left_minus=0	max_min_left_plus=82	max_min_right=45	max_min_right_minus=45	max_min_right_plus=0	max_pos_hash_score=428	max_right=161	max_right_minus=45	max_right_plus=161	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.888e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=9	side_1_possible_overlap_registers=223	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=125	side_2_redundant=0	total_non_overlap_reads=3
JC	324	.	1	914305	1	1	915359	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.877e-02	junction_possible_overlap_registers=215	key=1__914305__1__1__915351__1__8____251__251__0__0	max_left=196	max_left_minus=196	max_left_plus=183	max_min_left=99	max_min_left_minus=99	max_min_left_plus=0	max_min_right=60	max_min_right_minus=47	max_min_right_plus=60	max_pos_hash_score=430	max_right=144	max_right_minus=144	max_right_plus=60	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.877e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=8	side_1_possible_overlap_registers=223	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=62	side_2_redundant=0	total_non_overlap_reads=3
JC	325	.	1	935118	1	1	935428	1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.013e-02	junction_possible_overlap_registers=219	key=1__935118__1__1__935424__1__4____251__251__0__0	max_left=168	max_left_minus=168	max_left_plus=128	max_min_left=110	max_min_left_minus=0	max_min_left_plus=110	max_min_right=118	max_min_right_minus=78	max_min_right_plus=118	max_pos_hash_score=438	max_right=137	max_right_minus=78	max_right_plus=137	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.013e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=4	side_1_possible_overlap_registers=223	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=219	side_2_read_count=92	side_2_redundant=0	total_non_overlap_reads=3
JC	326	.	1	1048990	1	1	1049155	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.648e-02	junction_possible_overlap_registers=213	key=1__1048990__1__1__1049145__1__10____251__251__0__0	max_left=146	max_left_minus=146	max_left_plus=146	max_min_left=117	max_min_left_minus=0	max_min_left_plus=117	max_min_right=94	max_min_right_minus=94	max_min_right_plus=57	max_pos_hash_score=426	max_right=124	max_right_minus=94	max_right_plus=124	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.648e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=10	side_1_possible_overlap_registers=223	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=4
JC	327	.	1	1143896	1	1	1143890	-1	0	alignment_overlap=18	coverage_minus=21	coverage_plus=32	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=205	key=1__1143896__1__1__1143908__-1__18____251__251__0__0	max_left=221	max_left_minus=217	max_left_plus=221	max_min_left=105	max_min_left_minus=90	max_min_left_plus=105	max_min_right=111	max_min_right_minus=81	max_min_right_plus=111	max_pos_hash_score=410	max_right=227	max_right_minus=219	max_right_plus=227	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.51	new_junction_read_count=53	polymorphism_frequency=9.020e-01	pos_hash_score=36	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=18	side_1_possible_overlap_registers=223	side_1_read_count=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=205	side_2_read_count=6	side_2_redundant=0	total_non_overlap_reads=53
JC	328	.	1	1166874	-1	1	1166924	-1	0	alignment_overlap=22	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.581e-02	junction_possible_overlap_registers=201	key=1__1166874__-1__1__1166946__-1__22____251__251__0__0	max_left=177	max_left_minus=79	max_left_plus=177	max_min_left=79	max_min_left_minus=79	max_min_left_plus=0	max_min_right=51	max_min_right_minus=0	max_min_right_plus=51	max_pos_hash_score=402	max_right=191	max_right_minus=191	max_right_plus=51	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.581e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=22	side_1_possible_overlap_registers=223	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=3
JC	329	.	1	1207425	1	1	1207982	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=3.169e-02	junction_possible_overlap_registers=214	key=1__1207425__1__1__1207973__1__9____251__251__0__0	max_left=200	max_left_minus=200	max_left_plus=48	max_min_left=48	max_min_left_minus=0	max_min_left_plus=48	max_min_right=96	max_min_right_minus=96	max_min_right_plus=0	max_pos_hash_score=428	max_right=96	max_right_minus=96	max_right_plus=69	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.169e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=9	side_1_possible_overlap_registers=223	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=3
JC	330	.	1	1270014	1	1	1270258	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.761e-02	junction_possible_overlap_registers=213	key=1__1270014__1__1__1270248__1__10____251__251__0__0	max_left=141	max_left_minus=0	max_left_plus=141	max_min_left=63	max_min_left_minus=0	max_min_left_plus=63	max_min_right=99	max_min_right_minus=0	max_min_right_plus=99	max_pos_hash_score=426	max_right=178	max_right_minus=0	max_right_plus=178	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.761e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=10	side_1_possible_overlap_registers=223	side_1_read_count=126	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=91	side_2_redundant=0	total_non_overlap_reads=3
JC	331	.	1	1282705	1	1	1282804	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=5.230e-02	junction_possible_overlap_registers=214	key=1__1282705__1__1__1282795__1__9____251__251__0__0	max_left=236	max_left_minus=0	max_left_plus=236	max_min_left=90	max_min_left_minus=0	max_min_left_plus=90	max_min_right=6	max_min_right_minus=0	max_min_right_plus=6	max_pos_hash_score=428	max_right=177	max_right_minus=0	max_right_plus=177	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=5.230e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=9	side_1_possible_overlap_registers=223	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=91	side_2_redundant=0	total_non_overlap_reads=5
JC	332	.	1	1394296	-1	1	1394402	-1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.429e-02	junction_possible_overlap_registers=211	key=1__1394296__-1__1__1394414__-1__12____251__251__0__0	max_left=173	max_left_minus=14	max_left_plus=173	max_min_left=14	max_min_left_minus=14	max_min_left_plus=14	max_min_right=106	max_min_right_minus=0	max_min_right_plus=106	max_pos_hash_score=422	max_right=106	max_right_minus=25	max_right_plus=106	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.429e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=12	side_1_possible_overlap_registers=223	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=4
JC	333	.	1	1452967	-1	1	1453313	-1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=3.360e-02	junction_possible_overlap_registers=215	key=1__1452967__-1__1__1453321__-1__8____251__251__0__0	max_left=192	max_left_minus=192	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=106	max_min_right_minus=106	max_min_right_plus=0	max_pos_hash_score=430	max_right=106	max_right_minus=106	max_right_plus=0	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.360e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=8	side_1_possible_overlap_registers=223	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=3
JC	334	.	1	1541494	1	1	1541964	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.733e-02	junction_possible_overlap_registers=216	key=1__1541494__1__1__1541957__1__7____251__251__0__0	max_left=163	max_left_minus=116	max_left_plus=163	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=89	max_min_right_minus=89	max_min_right_plus=78	max_pos_hash_score=432	max_right=89	max_right_minus=89	max_right_plus=89	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.733e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=7	side_1_possible_overlap_registers=223	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=3
JC	335	.	1	1555226	-1	1	1555320	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.985e-02	junction_possible_overlap_registers=215	key=1__1555226__-1__1__1555328__-1__8____251__251__0__0	max_left=207	max_left_minus=0	max_left_plus=207	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=94	max_min_right_minus=0	max_min_right_plus=94	max_pos_hash_score=430	max_right=94	max_right_minus=0	max_right_plus=94	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.985e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=8	side_1_possible_overlap_registers=223	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=3
JC	336	.	1	1627018	1	1	1627041	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.628e-02	junction_possible_overlap_registers=214	key=1__1627018__1__1__1627032__1__9____251__251__0__0	max_left=181	max_left_minus=168	max_left_plus=181	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=66	max_min_right_minus=66	max_min_right_plus=64	max_pos_hash_score=428	max_right=66	max_right_minus=66	max_right_plus=64	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.628e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=9	side_1_possible_overlap_registers=223	side_1_read_count=116	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=214	side_2_read_count=111	side_2_redundant=0	total_non_overlap_reads=3
JC	337	.	1	1661179	1	1	1661189	1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.250e-02	junction_possible_overlap_registers=219	key=1__1661179__1__1__1661185__1__4____251__251__0__0	max_left=199	max_left_minus=161	max_left_plus=199	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=83	max_min_right_minus=61	max_min_right_plus=83	max_pos_hash_score=438	max_right=83	max_right_minus=61	max_right_plus=83	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.250e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=4	side_1_possible_overlap_registers=223	side_1_read_count=132	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=219	side_2_read_count=131	side_2_redundant=0	total_non_overlap_reads=3
JC	338	.	1	1678930	-1	1	1680038	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.855e-02	junction_possible_overlap_registers=213	key=1__1678930__-1__1__1680048__-1__10____251__251__0__0	max_left=212	max_left_minus=212	max_left_plus=60	max_min_left=60	max_min_left_minus=57	max_min_left_plus=60	max_min_right=28	max_min_right_minus=28	max_min_right_plus=0	max_pos_hash_score=426	max_right=183	max_right_minus=183	max_right_plus=181	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.855e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.48	side_1_overlap=10	side_1_possible_overlap_registers=223	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=3
JC	339	.	1	1786208	1	1	1786307	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=3.570e-02	junction_possible_overlap_registers=212	key=1__1786208__1__1__1786296__1__11____251__251__0__0	max_left=234	max_left_minus=234	max_left_plus=170	max_min_left=79	max_min_left_minus=0	max_min_left_plus=79	max_min_right=69	max_min_right_minus=4	max_min_right_plus=69	max_pos_hash_score=424	max_right=123	max_right_minus=4	max_right_plus=123	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.570e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=11	side_1_possible_overlap_registers=223	side_1_read_count=120	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=4
JC	340	.	1	1817782	-1	1	1818210	-1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.518e-02	junction_possible_overlap_registers=211	key=1__1817782__-1__1__1818222__-1__12____251__251__0__0	max_left=98	max_left_minus=98	max_left_plus=52	max_min_left=98	max_min_left_minus=98	max_min_left_plus=52	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=422	max_right=203	max_right_minus=141	max_right_plus=203	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.518e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=12	side_1_possible_overlap_registers=223	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=4
JC	341	.	1	1820532	1	1	1821379	1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1.161e-01	junction_possible_overlap_registers=211	key=1__1820532__1__1__1821367__1__12____251__251__0__0	max_left=230	max_left_minus=230	max_left_plus=154	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=86	max_min_right_minus=8	max_min_right_plus=86	max_pos_hash_score=422	max_right=86	max_right_minus=8	max_right_plus=86	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.07	new_junction_read_count=8	polymorphism_frequency=1.161e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.53	side_1_overlap=12	side_1_possible_overlap_registers=223	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=8
JC	342	.	1	1948689	1	1	1948731	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.385e-02	junction_possible_overlap_registers=213	key=1__1948689__1__1__1948721__1__10____251__251__0__0	max_left=216	max_left_minus=0	max_left_plus=216	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=64	max_min_right_minus=0	max_min_right_plus=64	max_pos_hash_score=426	max_right=64	max_right_minus=0	max_right_plus=64	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.385e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=10	side_1_possible_overlap_registers=223	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=130	side_2_redundant=0	total_non_overlap_reads=3
JC	343	.	1	1985820	-1	1	1985958	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.152e-02	junction_possible_overlap_registers=216	key=1__1985820__-1__1__1985965__-1__7____251__251__0__0	max_left=137	max_left_minus=126	max_left_plus=137	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=87	max_min_right_minus=46	max_min_right_plus=87	max_pos_hash_score=432	max_right=87	max_right_minus=46	max_right_plus=87	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.152e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=7	side_1_possible_overlap_registers=223	side_1_read_count=84	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=216	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=3
JC	344	.	1	2102524	-1	2	1	1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=42	flanking_left=251	flanking_right=196	frequency=1	junction_possible_overlap_registers=223	key=1__2102524__-1__2__1__1__0____251__196__0__1	max_left=247	max_left_minus=235	max_left_plus=247	max_min_left=122	max_min_left_minus=122	max_min_left_plus=122	max_min_right=116	max_min_right_minus=116	max_min_right_plus=115	max_pos_hash_score=446	max_right=196	max_right_minus=196	max_right_plus=195	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=1.07	new_junction_read_count=85	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=223	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=83
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