mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 271 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,958,371 | 0 | T | G | 65.7% | 50.2 / 83.3 | 70 | intergenic (+123930/‑26654) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| * | 1 | 1,958,330 | 0 | C | T | 55.1% | 17.8 / 67.9 | 69 | intergenic (+123889/‑26695) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| * | 1 | 1,958,392 | 0 | T | G | 54.2% | 91.0 / 115.2 | 72 | intergenic (+123951/‑26633) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| * | 1 | 959,722 | 0 | C | T | 53.2% | 31.7 / 78.3 | 62 | intergenic (+9473/+43337) | unknown/unknown | tRNA‑Leu‑CAG/tRNA‑Lys‑TTT |
| * | 1 | 1,748,648 | 0 | A | C | 47.2% | 153.3 / 31.4 | 89 | intergenic (‑39238/‑10704) | unknown/unknown | tRNA‑Arg‑CCG/tRNA‑Asn‑GTT |
| * | 1 | 2,144,319 | 0 | A | C | 46.2% | 133.8 / 23.7 | 78 | intergenic (‑39341/–) | unknown/– | tRNA‑Met‑CAT/– |
| * | 1 | 1,344,498 | 0 | T | G | 43.2% | 162.0 / 11.3 | 81 | intergenic (+11880/+242635) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 487,724 | 0 | C | A | 42.7% | 140.7 / 30.9 | 75 | intergenic (‑13558/‑62969) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| * | 1 | 157,012 | 0 | G | T | 42.4% | 178.3 / 45.0 | 99 | intergenic (+20893/+106141) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| * | 1 | 1,958,352 | 0 | T | G | 41.8% | 77.4 / 16.9 | 67 | intergenic (+123911/‑26673) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| * | 1 | 1,748,634 | 0 | A | C | 41.8% | 176.4 / 26.7 | 91 | intergenic (‑39224/‑10718) | unknown/unknown | tRNA‑Arg‑CCG/tRNA‑Asn‑GTT |
| * | 1 | 241,252 | 0 | A | C | 40.9% | 198.1 / 20.9 | 105 | intergenic (+105133/+21901) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| * | 1 | 789,340 | 0 | G | A | 40.8% | 113.0 / 36.4 | 76 | intergenic (+54408/+32537) | unknown/unknown | tRNA‑Asn‑GTT/tRNA‑Thr‑GGT |
| * | 1 | 539,681 | 0 | T | A | 40.2% | 154.3 / 51.5 | 97 | intergenic (‑65515/‑11012) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| * | 1 | 1,714,036 | 0 | A | C | 39.7% | 148.1 / 12.5 | 73 | intergenic (‑4626/‑45316) | unknown/unknown | tRNA‑Arg‑CCG/tRNA‑Asn‑GTT |
| * | 1 | 1,524,830 | 0 | T | G | 39.4% | 172.2 / 19.0 | 96 | intergenic (+192212/+62303) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| * | 1 | 1,650,782 | 0 | C | T | 39.2% | 100.9 / 33.7 | 75 | intergenic (‑39312/‑33837) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| * | 1 | 1,988,442 | 0 | T | A | 39.1% | 153.9 / 30.5 | 87 | intergenic (+3242/+53347) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| * | 1 | 247,686 | 0 | A | C | 38.8% | 87.7 / 21.6 | 67 | intergenic (+111567/+15467) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| * | 1 | 959,705 | 0 | T | G | 38.8% | 114.0 / 19.5 | 68 | intergenic (+9456/+43354) | unknown/unknown | tRNA‑Leu‑CAG/tRNA‑Lys‑TTT |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 1 | 1903137 = | 91 (1.010) | 7 (0.120) | 7/306 | 5.0 | 9.3% | intergenic (+68696/‑81888) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| ? | 1 | = 1903132 | 76 (1.270) | intergenic (+68691/‑81893) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC | |||||
| * | ? | 1 | = 1593817 | 73 (0.810) | 5 (0.060) | 5/426 | 7.5 | 7.0% | intergenic (‑6608/+12707) | unknown/unknown | tRNA‑Val‑GAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 1593801 | 66 (0.790) | intergenic (‑6592/+12723) | unknown/unknown | tRNA‑Val‑GAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | = 1971222 | 70 (0.780) | 6 (0.070) | 5/442 | 7.7 | 8.2% | intergenic (+136781/‑13803) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| ? | 1 | = 1971246 | 67 (0.770) | intergenic (+136805/‑13779) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC | |||||
| * | ? | 1 | 1989511 = | 100 (1.110) | 4 (0.050) | 4/436 | 8.1 | 4.1% | intergenic (+4311/+52278) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| ? | 1 | 1989610 = | 93 (1.090) | intergenic (+4410/+52179) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT | |||||
| * | ? | 1 | = 243948 | 99 (1.100) | 4 (0.050) | 4/438 | 8.1 | 4.1% | intergenic (+107829/+19205) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | 1 | = 243955 | 93 (1.080) | intergenic (+107836/+19198) | unknown/unknown | tRNA‑Val‑TAC/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | 1 | = 79041 | 58 (0.740) | 10 (0.110) +CAGAAGC |
3/384 | 8.1 | 12.6% | intergenic (–/+54900) | –/unknown | –/tRNA‑Ala‑GGC |
| ? | 1 | 79042 = | 76 (0.850) | intergenic (–/+54899) | –/unknown | –/tRNA‑Ala‑GGC | |||||
| * | ? | 1 | 2114749 = | 101 (1.130) | 4 (0.050) | 4/446 | 8.2 | 3.8% | intergenic (‑9771/–) | unknown/– | tRNA‑Met‑CAT/– |
| ? | 1 | 2114773 = | 103 (1.180) | intergenic (‑9795/–) | unknown/– | tRNA‑Met‑CAT/– | |||||
| * | ? | 1 | 1038626 = | 77 (0.860) | 4 (0.050) | 4/444 | 8.2 | 4.6% | intergenic (‑35492/+14309) | unknown/unknown | tRNA‑Lys‑TTT/tRNA‑Lys‑TTT |
| ? | 1 | 1039069 = | 90 (1.030) | intergenic (‑35935/+13866) | unknown/unknown | tRNA‑Lys‑TTT/tRNA‑Lys‑TTT | |||||
| * | ? | 1 | 1420800 = | 53 (0.590) | 3 (0.040) | 3/404 | 8.3 | 6.1% | intergenic (+88182/+166333) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| ? | 1 | = 1420794 | 45 (0.570) | intergenic (+88176/+166339) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC | |||||
| * | ? | 1 | = 318833 | 68 (0.760) | 3 (0.040) | 3/416 | 8.5 | 5.2% | intergenic (‑50551/+155243) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA |
| ? | 1 | = 319106 | 47 (0.580) | intergenic (‑50824/+154970) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA | |||||