#=GENOME_DIFF	1.0
#=CREATED	12:09:45 20 Jan 2022
#=PROGRAM	breseq 0.35.4 
#=COMMAND	breseq -j 6 -r /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa5S.gbk /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/AA-5R-unknown_S3_L001_R1_001.fastq.gz -o /data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/breseq_results/fq5R_vs_gbk5S
#=REFSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/genomes/Aa5S.gbk
#=READSEQ	/data/p127804/PROJECTS/JanMaarten/Yanyan_202201_SNP/fastq/AA-5R-unknown_S3_L001_R1_001.fastq.gz
#=CONVERTED-BASES	198278488
#=CONVERTED-READS	862761
#=INPUT-BASES	198296548
#=INPUT-READS	863277
#=MAPPED-BASES	195060933
#=MAPPED-READS	849742
SNP	1	136	1	863134	A
DEL	2	290	1	1337412	5	repeat_length=5	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=CACCT
RA	3	.	1	23122	0	T	G	bias_e_value=2.1923e-05	bias_p_value=1.01578e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.2	fisher_strand_p_value=3.41967e-13	frequency=3.418e-01	ks_quality_p_value=1	major_base=T	major_cov=10/42	major_frequency=6.582e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.418e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=10/42	total_cov=38/42
RA	4	.	1	48162	0	T	G	bias_e_value=2.61352e-06	bias_p_value=1.21095e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.9	fisher_strand_p_value=3.79582e-14	frequency=3.474e-01	ks_quality_p_value=1	major_base=T	major_cov=15/47	major_frequency=6.526e-01	minor_base=G	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.474e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=15/47	total_cov=48/47
RA	5	.	1	48386	0	A	C	bias_e_value=0.18884	bias_p_value=8.74974e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=287.3	fisher_strand_p_value=4.31866e-09	frequency=2.424e-01	ks_quality_p_value=1	major_base=A	major_cov=48/27	major_frequency=7.576e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.424e-01	polymorphism_score=19.3	prediction=polymorphism	ref_cov=48/27	total_cov=48/51
RA	6	.	1	48415	0	T	C	bias_e_value=4.59148e-05	bias_p_value=2.12742e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.5	fisher_strand_p_value=7.35147e-13	frequency=3.093e-01	ks_quality_p_value=1	major_base=T	major_cov=49/18	major_frequency=6.907e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.093e-01	polymorphism_score=27.2	prediction=polymorphism	ref_cov=49/18	total_cov=49/48
RA	7	.	1	48421	0	A	C	bias_e_value=2.84944e-05	bias_p_value=1.32026e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.1	fisher_strand_p_value=4.48569e-13	frequency=2.947e-01	ks_quality_p_value=1	major_base=A	major_cov=51/16	major_frequency=7.053e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.947e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=51/16	total_cov=51/47
RA	8	.	1	48425	0	G	T	bias_e_value=0.0112446	bias_p_value=5.21007e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.9	fisher_strand_p_value=2.24402e-10	frequency=2.529e-01	ks_quality_p_value=1	major_base=G	major_cov=48/17	major_frequency=7.471e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.529e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=48/17	total_cov=48/41
RA	9	.	1	48435	0	C	A	bias_e_value=0.0167206	bias_p_value=7.74736e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.2	fisher_strand_p_value=3.39755e-10	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=45/19	major_frequency=7.273e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.727e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=45/19	total_cov=45/43
RA	10	.	1	48457	0	G	C	bias_e_value=0.000547079	bias_p_value=2.53484e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.4	fisher_strand_p_value=9.61337e-12	frequency=3.133e-01	ks_quality_p_value=1	major_base=G	major_cov=43/14	major_frequency=6.867e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.133e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=43/14	total_cov=43/40
RA	11	.	1	58624	0	G	A	bias_e_value=0.000103008	bias_p_value=4.77278e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.4	fisher_strand_p_value=1.69842e-12	frequency=2.048e-01	ks_quality_p_value=1	major_base=G	major_cov=59/7	major_frequency=7.952e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.048e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=59/7	total_cov=59/24
RA	12	.	1	59148	0	T	C	bias_e_value=8.80541e-07	bias_p_value=4.07991e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.2	fisher_strand_p_value=1.23541e-14	frequency=2.358e-01	ks_quality_p_value=1	major_base=T	major_cov=72/22	major_frequency=7.642e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.358e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=72/22	total_cov=72/52
RA	13	.	1	117339	0	C	A	bias_e_value=0.373444	bias_p_value=1.73032e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.1	fisher_strand_p_value=8.8542e-09	frequency=2.688e-01	ks_quality_p_value=1	major_base=C	major_cov=42/26	major_frequency=7.312e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.688e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=42/26	total_cov=42/51
RA	14	.	1	133141	0	C	T	bias_e_value=2.92297e-07	bias_p_value=1.35433e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.5	fisher_strand_p_value=3.96451e-15	frequency=3.562e-01	ks_quality_p_value=1	major_base=C	major_cov=5/42	major_frequency=6.438e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.562e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=5/42	total_cov=31/42
RA	15	.	1	133150	0	G	A	bias_e_value=1.3504	bias_p_value=6.25696e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.2	fisher_strand_p_value=3.44073e-08	frequency=2.329e-01	ks_quality_p_value=1	major_base=G	major_cov=11/45	major_frequency=7.671e-01	minor_base=A	minor_cov=16/1	new_cov=16/1	polymorphism_frequency=2.329e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=11/45	total_cov=27/46
RA	16	.	1	139523	0	C	T	bias_e_value=0.165854	bias_p_value=7.68468e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.1	fisher_strand_p_value=3.76759e-09	frequency=2.326e-01	ks_quality_p_value=1	major_base=C	major_cov=19/47	major_frequency=7.674e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.326e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=19/47	total_cov=40/47
RA	17	.	1	139527	0	T	G	bias_e_value=0.00497867	bias_p_value=2.30682e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.6	fisher_strand_p_value=9.58448e-11	frequency=2.527e-01	ks_quality_p_value=1	major_base=T	major_cov=18/50	major_frequency=7.473e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.527e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=18/50	total_cov=41/50
RA	18	.	1	139561	0	G	A	bias_e_value=0.219485	bias_p_value=1.01696e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.2	fisher_strand_p_value=5.05898e-09	frequency=2.184e-01	ks_quality_p_value=1	major_base=G	major_cov=19/49	major_frequency=7.816e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.184e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=19/49	total_cov=39/49
RA	19	.	1	155664	0	G	A	bias_e_value=0.632991	bias_p_value=2.93291e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.6	fisher_strand_p_value=1.54479e-08	frequency=2.472e-01	ks_quality_p_value=1	major_base=G	major_cov=23/44	major_frequency=7.528e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=23/44	total_cov=45/44
RA	20	.	1	156938	0	G	A	bias_e_value=7.54715e-08	bias_p_value=3.4969e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.6	fisher_strand_p_value=9.83509e-16	frequency=2.692e-01	ks_quality_p_value=1	major_base=G	major_cov=63/13	major_frequency=7.308e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.692e-01	polymorphism_score=22.8	prediction=polymorphism	ref_cov=63/13	total_cov=63/41
RA	21	.	1	156950	0	T	C	bias_e_value=0.00344878	bias_p_value=1.59796e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.4	fisher_strand_p_value=6.5353e-11	frequency=2.347e-01	ks_quality_p_value=1	major_base=T	major_cov=55/20	major_frequency=7.653e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.347e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=55/20	total_cov=55/43
RA	22	.	1	157007	0	C	T	bias_e_value=1.41598	bias_p_value=6.56084e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.3	fisher_strand_p_value=3.61781e-08	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=31/44	major_frequency=7.500e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.500e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=31/44	total_cov=56/44
RA	23	.	1	157012	0	G	T	bias_e_value=2.80367e-09	bias_p_value=1.29906e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.3	fisher_strand_p_value=3.33612e-17	frequency=4.242e-01	ks_quality_p_value=1	major_base=G	major_cov=12/45	major_frequency=5.758e-01	minor_base=T	minor_cov=42/0	new_cov=42/0	polymorphism_frequency=4.242e-01	polymorphism_score=45.0	prediction=polymorphism	ref_cov=12/45	total_cov=54/45
RA	24	.	1	157050	0	G	A	bias_e_value=0.0355394	bias_p_value=1.64669e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.6	fisher_strand_p_value=7.48032e-10	frequency=2.600e-01	ks_quality_p_value=1	major_base=G	major_cov=26/48	major_frequency=7.400e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.600e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=26/48	total_cov=52/48
RA	25	.	1	157084	0	G	C	bias_e_value=0.362741	bias_p_value=1.68073e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.3	fisher_strand_p_value=8.58695e-09	frequency=2.301e-01	ks_quality_p_value=1	major_base=G	major_cov=36/51	major_frequency=7.699e-01	minor_base=C	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.301e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=36/51	total_cov=62/51
RA	26	.	1	217549	0	G	A	bias_e_value=0.0121538	bias_p_value=5.63134e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=292.2	fisher_strand_p_value=2.43398e-10	frequency=2.018e-01	ks_quality_p_value=1	major_base=G	major_cov=62/25	major_frequency=7.982e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.018e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=62/25	total_cov=62/48
RA	27	.	1	217586	0	G	A	bias_e_value=0.000745627	bias_p_value=3.45479e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.7	fisher_strand_p_value=1.32642e-11	frequency=2.056e-01	ks_quality_p_value=1	major_base=G	major_cov=65/20	major_frequency=7.944e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.056e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=65/20	total_cov=65/42
RA	28	.	1	217620	0	A	C	bias_e_value=8.36418e-10	bias_p_value=3.87547e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=322.5	fisher_strand_p_value=9.64525e-18	frequency=2.703e-01	ks_quality_p_value=1	major_base=A	major_cov=69/12	major_frequency=7.297e-01	minor_base=C	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.703e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=69/12	total_cov=69/42
RA	29	.	1	217630	0	A	C	bias_e_value=4.27038e-08	bias_p_value=1.97864e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=340.3	fisher_strand_p_value=5.47476e-16	frequency=2.411e-01	ks_quality_p_value=1	major_base=A	major_cov=71/14	major_frequency=7.589e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.411e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=71/14	total_cov=71/41
RA	30	.	1	217645	0	G	T	bias_e_value=3.64581e-11	bias_p_value=1.68925e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=289.3	fisher_strand_p_value=3.8932e-19	frequency=2.936e-01	ks_quality_p_value=1	major_base=G	major_cov=67/10	major_frequency=7.064e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.936e-01	polymorphism_score=38.9	prediction=polymorphism	ref_cov=67/10	total_cov=67/42
RA	31	.	1	241146	0	G	A	bias_e_value=1.03375e-05	bias_p_value=4.78981e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.2	fisher_strand_p_value=1.57137e-13	frequency=2.342e-01	ks_quality_p_value=1	major_base=G	major_cov=66/19	major_frequency=7.658e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.342e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=66/19	total_cov=66/45
RA	32	.	1	241174	0	T	C	bias_e_value=2.38734e-08	bias_p_value=1.10615e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=267.8	fisher_strand_p_value=3.01083e-16	frequency=2.883e-01	ks_quality_p_value=1	major_base=T	major_cov=63/16	major_frequency=7.117e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.883e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=63/16	total_cov=63/48
RA	33	.	1	241239	0	C	A	bias_e_value=1.7578e-11	bias_p_value=8.14461e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.4	fisher_strand_p_value=1.84532e-19	frequency=3.774e-01	ks_quality_p_value=1	major_base=C	major_cov=55/11	major_frequency=6.226e-01	minor_base=A	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.774e-01	polymorphism_score=48.7	prediction=polymorphism	ref_cov=55/11	total_cov=55/52
RA	34	.	1	241252	0	A	C	bias_e_value=1.61693e-11	bias_p_value=7.49188e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.1	fisher_strand_p_value=1.69415e-19	frequency=4.095e-01	ks_quality_p_value=1	major_base=A	major_cov=51/11	major_frequency=5.905e-01	minor_base=C	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=4.095e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=51/11	total_cov=51/54
RA	35	.	1	247557	0	C	A	bias_e_value=71191.9	bias_p_value=0.0329861	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.0	fisher_strand_p_value=0.00528357	frequency=2.083e-01	ks_quality_p_value=1	major_base=C	major_cov=22/54	major_frequency=7.917e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.083e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=22/54	total_cov=25/74
RA	36	.	1	247560	0	G	A	bias_e_value=1929440	bias_p_value=0.893991	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.6	fisher_strand_p_value=0.576439	frequency=2.396e-01	ks_quality_p_value=1	major_base=G	major_cov=19/54	major_frequency=7.604e-01	minor_base=A	minor_cov=4/19	new_cov=4/19	polymorphism_frequency=2.396e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=19/54	total_cov=24/73
RA	37	.	1	247563	0	G	A	bias_e_value=1683620	bias_p_value=0.780089	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.9	fisher_strand_p_value=0.415121	frequency=2.474e-01	ks_quality_p_value=1	major_base=G	major_cov=20/53	major_frequency=7.526e-01	minor_base=A	minor_cov=4/20	new_cov=4/20	polymorphism_frequency=2.474e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=20/53	total_cov=24/73
RA	38	.	1	247645	0	A	C	bias_e_value=25.0332	bias_p_value=1.15989e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=132.8	fisher_strand_p_value=8.3353e-07	frequency=3.580e-01	ks_quality_p_value=0.922904	major_base=A	major_cov=29/23	major_frequency=6.420e-01	minor_base=C	minor_cov=1/28	new_cov=1/28	polymorphism_frequency=3.580e-01	polymorphism_score=23.4	prediction=polymorphism	ref_cov=29/23	total_cov=30/51
RA	39	.	1	247686	0	A	C	bias_e_value=3.80643	bias_p_value=1.76367e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.7	fisher_strand_p_value=1.03221e-07	frequency=3.881e-01	ks_quality_p_value=1	major_base=A	major_cov=28/13	major_frequency=6.119e-01	minor_base=C	minor_cov=1/25	new_cov=1/25	polymorphism_frequency=3.881e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=28/13	total_cov=29/38
RA	40	.	1	279734	0	G	A	bias_e_value=0.000160065	bias_p_value=7.41645e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.7	fisher_strand_p_value=2.68283e-12	frequency=2.949e-01	ks_quality_p_value=1	major_base=G	major_cov=45/10	major_frequency=7.051e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.949e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=45/10	total_cov=45/33
RA	41	.	1	279754	0	C	A	bias_e_value=0.000946721	bias_p_value=4.38654e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.9	fisher_strand_p_value=1.70037e-11	frequency=2.703e-01	ks_quality_p_value=1	major_base=C	major_cov=45/9	major_frequency=7.297e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.703e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=45/9	total_cov=45/29
RA	42	.	1	279766	0	G	A	bias_e_value=0.00407033	bias_p_value=1.88595e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.4	fisher_strand_p_value=7.768e-11	frequency=2.632e-01	ks_quality_p_value=1	major_base=G	major_cov=45/11	major_frequency=7.368e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.632e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=45/11	total_cov=45/32
RA	43	.	1	279771	0	A	C	bias_e_value=3.75952e-08	bias_p_value=1.74194e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.1	fisher_strand_p_value=4.8024e-16	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=48/6	major_frequency=6.667e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.333e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=48/6	total_cov=48/33
RA	44	.	1	304814	0	T	C	bias_e_value=4.59148e-05	bias_p_value=2.12742e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.7	fisher_strand_p_value=7.35147e-13	frequency=3.163e-01	ks_quality_p_value=1	major_base=T	major_cov=49/18	major_frequency=6.837e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.163e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=49/18	total_cov=49/50
RA	45	.	1	310989	0	C	T	bias_e_value=10.738	bias_p_value=4.97537e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.8	fisher_strand_p_value=3.11301e-07	frequency=2.232e-01	ks_quality_p_value=1	major_base=C	major_cov=45/42	major_frequency=7.768e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.232e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=45/42	total_cov=45/67
RA	46	.	1	334790	0	T	A	bias_e_value=0.126478	bias_p_value=5.86023e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=318.6	fisher_strand_p_value=2.83353e-09	frequency=2.033e-01	ks_quality_p_value=1	major_base=T	major_cov=61/37	major_frequency=7.967e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.033e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=61/37	total_cov=61/62
RA	47	.	1	334803	0	T	A	bias_e_value=0.00013595	bias_p_value=6.29914e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.2	fisher_strand_p_value=2.26477e-12	frequency=2.419e-01	ks_quality_p_value=1	major_base=T	major_cov=64/30	major_frequency=7.581e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.419e-01	polymorphism_score=26.0	prediction=polymorphism	ref_cov=64/30	total_cov=64/60
RA	48	.	1	334810	0	A	C	bias_e_value=1.67863e-05	bias_p_value=7.77777e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.6	fisher_strand_p_value=2.59429e-13	frequency=3.070e-01	ks_quality_p_value=1	major_base=A	major_cov=54/25	major_frequency=6.930e-01	minor_base=C	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=3.070e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=54/25	total_cov=54/60
RA	49	.	1	353887	0	C	A	bias_e_value=0.00110376	bias_p_value=5.11418e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.3	fisher_strand_p_value=1.99477e-11	frequency=3.049e-01	ks_quality_p_value=1	major_base=C	major_cov=43/14	major_frequency=6.951e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.049e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=43/14	total_cov=43/39
RA	50	.	1	354795	0	C	A	bias_e_value=3.57857	bias_p_value=1.6581e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.6	fisher_strand_p_value=9.66711e-08	frequency=2.787e-01	ks_quality_p_value=1	major_base=C	major_cov=12/32	major_frequency=7.213e-01	minor_base=A	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.787e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=12/32	total_cov=31/32
RA	51	.	1	354826	0	G	T	bias_e_value=45.1801	bias_p_value=2.09338e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.5	fisher_strand_p_value=1.44926e-06	frequency=2.308e-01	ks_quality_p_value=1	major_base=G	major_cov=16/34	major_frequency=7.692e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.308e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=16/34	total_cov=35/34
RA	52	.	1	354848	0	G	A	bias_e_value=4.06723	bias_p_value=1.88451e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.2	fisher_strand_p_value=1.1075e-07	frequency=2.687e-01	ks_quality_p_value=1	major_base=G	major_cov=15/34	major_frequency=7.313e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.687e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=15/34	total_cov=33/34
RA	53	.	1	375232	0	T	G	bias_e_value=0.000125702	bias_p_value=5.8243e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.4	fisher_strand_p_value=2.08795e-12	frequency=2.333e-01	ks_quality_p_value=1	major_base=T	major_cov=12/57	major_frequency=7.667e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=12/57	total_cov=33/57
RA	54	.	1	375236	0	C	T	bias_e_value=1.05324e-05	bias_p_value=4.88009e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.5	fisher_strand_p_value=1.60201e-13	frequency=2.472e-01	ks_quality_p_value=1	major_base=C	major_cov=10/57	major_frequency=7.528e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=10/57	total_cov=33/57
RA	55	.	1	375245	0	G	C	bias_e_value=0.000722993	bias_p_value=3.34992e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.3	fisher_strand_p_value=1.3652e-11	frequency=2.333e-01	ks_quality_p_value=0.940946	major_base=G	major_cov=14/55	major_frequency=7.667e-01	minor_base=C	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=14/55	total_cov=35/55
RA	56	.	1	375256	0	C	T	bias_e_value=0.0363879	bias_p_value=1.686e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.4	fisher_strand_p_value=7.72591e-10	frequency=2.065e-01	ks_quality_p_value=0.992443	major_base=C	major_cov=18/55	major_frequency=7.935e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.065e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=18/55	total_cov=37/55
RA	57	.	1	379738	0	C	T	bias_e_value=718.472	bias_p_value=0.000332897	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.8	fisher_strand_p_value=2.90861e-05	frequency=2.286e-01	ks_quality_p_value=1	major_base=C	major_cov=34/47	major_frequency=7.714e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.286e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=34/47	total_cov=34/71
RA	58	.	1	381427	0	G	A	bias_e_value=0.000988484	bias_p_value=4.58005e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.9	fisher_strand_p_value=1.77848e-11	frequency=2.614e-01	ks_quality_p_value=1	major_base=G	major_cov=15/50	major_frequency=7.386e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.614e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=15/50	total_cov=38/50
RA	59	.	1	381436	0	G	A	bias_e_value=0.751685	bias_p_value=3.48286e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.9	fisher_strand_p_value=1.85216e-08	frequency=2.105e-01	ks_quality_p_value=1	major_base=G	major_cov=25/50	major_frequency=7.895e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.105e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=25/50	total_cov=45/50
RA	60	.	1	381461	0	C	A	bias_e_value=0.389832	bias_p_value=1.80625e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.2	fisher_strand_p_value=9.26421e-09	frequency=2.041e-01	ks_quality_p_value=1	major_base=C	major_cov=25/53	major_frequency=7.959e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.041e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=25/53	total_cov=45/53
RA	61	.	1	386613	0	A	G	bias_e_value=1.5445e-05	bias_p_value=7.15628e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.5	fisher_strand_p_value=2.38016e-13	frequency=2.600e-01	ks_quality_p_value=1	major_base=A	major_cov=16/58	major_frequency=7.400e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.600e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=16/58	total_cov=42/58
RA	62	.	1	386635	0	C	T	bias_e_value=1.61347e-05	bias_p_value=7.47585e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.7	fisher_strand_p_value=2.49019e-13	frequency=2.524e-01	ks_quality_p_value=1	major_base=C	major_cov=17/60	major_frequency=7.476e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.524e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=17/60	total_cov=43/60
RA	63	.	1	386639	0	C	T	bias_e_value=1.7336e-07	bias_p_value=8.03246e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.8	fisher_strand_p_value=2.31487e-15	frequency=2.816e-01	ks_quality_p_value=1	major_base=C	major_cov=14/60	major_frequency=7.184e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.816e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=14/60	total_cov=43/60
RA	64	.	1	386659	0	G	T	bias_e_value=0.000174889	bias_p_value=8.1033e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=313.2	fisher_strand_p_value=2.94107e-12	frequency=2.212e-01	ks_quality_p_value=1	major_base=G	major_cov=18/63	major_frequency=7.788e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.212e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=18/63	total_cov=41/63
RA	65	.	1	397026	0	C	A	bias_e_value=31.0712	bias_p_value=1.43965e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.5	fisher_strand_p_value=1.00187e-06	frequency=2.121e-01	ks_quality_p_value=0.967893	major_base=C	major_cov=37/15	major_frequency=7.879e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.121e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=37/15	total_cov=37/29
RA	66	.	1	397067	0	G	T	bias_e_value=1.58832	bias_p_value=7.35935e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.1	fisher_strand_p_value=4.08553e-08	frequency=2.794e-01	ks_quality_p_value=1	major_base=G	major_cov=38/11	major_frequency=7.206e-01	minor_base=T	minor_cov=1/18	new_cov=1/18	polymorphism_frequency=2.794e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=38/11	total_cov=39/29
RA	67	.	1	397092	0	G	A	bias_e_value=0.000449723	bias_p_value=2.08375e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.3	fisher_strand_p_value=7.84205e-12	frequency=2.958e-01	ks_quality_p_value=1	major_base=G	major_cov=42/8	major_frequency=7.042e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.958e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=42/8	total_cov=42/29
RA	68	.	1	416744	0	C	A	bias_e_value=1.9946e-10	bias_p_value=9.24182e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.1	fisher_strand_p_value=2.21895e-18	frequency=2.893e-01	ks_quality_p_value=1	major_base=C	major_cov=70/16	major_frequency=7.107e-01	minor_base=A	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.893e-01	polymorphism_score=37.4	prediction=polymorphism	ref_cov=70/16	total_cov=70/51
RA	69	.	1	416780	0	G	A	bias_e_value=1.03598e-08	bias_p_value=4.80012e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.5	fisher_strand_p_value=1.27673e-16	frequency=2.991e-01	ks_quality_p_value=1	major_base=G	major_cov=61/14	major_frequency=7.009e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.991e-01	polymorphism_score=33.4	prediction=polymorphism	ref_cov=61/14	total_cov=61/46
RA	70	.	1	416793	0	A	C	bias_e_value=1.03593e-12	bias_p_value=4.79988e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.4	fisher_strand_p_value=1.02057e-20	frequency=3.303e-01	ks_quality_p_value=1	major_base=A	major_cov=64/9	major_frequency=6.697e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.303e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=64/9	total_cov=64/46
RA	71	.	1	429955	0	T	G	bias_e_value=1.68649e-17	bias_p_value=7.81421e-24	consensus_reject=FREQUENCY_CUTOFF	consensus_score=361.8	fisher_strand_p_value=1.34101e-25	frequency=3.000e-01	ks_quality_p_value=1	major_base=T	major_cov=8/83	major_frequency=7.000e-01	minor_base=G	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=3.000e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=8/83	total_cov=48/83
RA	72	.	1	437630	0	C	T	bias_e_value=4.81671e-09	bias_p_value=2.23178e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.0	fisher_strand_p_value=5.81441e-17	frequency=2.051e-01	ks_quality_p_value=1	major_base=C	major_cov=62/0	major_frequency=7.949e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.051e-01	polymorphism_score=37.3	prediction=polymorphism	ref_cov=62/0	total_cov=62/16
RA	73	.	1	449329	0	C	G	bias_e_value=0.428621	bias_p_value=1.98598e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.3	fisher_strand_p_value=1.02385e-08	frequency=3.253e-01	ks_quality_p_value=1	major_base=C	major_cov=22/34	major_frequency=6.747e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.253e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=22/34	total_cov=50/34
RA	74	.	1	449347	0	C	T	bias_e_value=47.3354	bias_p_value=2.19324e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.1	fisher_strand_p_value=1.52368e-06	frequency=2.785e-01	ks_quality_p_value=1	major_base=C	major_cov=26/31	major_frequency=7.215e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.785e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=26/31	total_cov=49/31
RA	75	.	1	449352	0	T	A	bias_e_value=38.8203	bias_p_value=1.7987e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.6	fisher_strand_p_value=1.23137e-06	frequency=2.911e-01	ks_quality_p_value=1	major_base=T	major_cov=25/31	major_frequency=7.089e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.911e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=25/31	total_cov=49/31
RA	76	.	1	449387	0	A	T	bias_e_value=12777	bias_p_value=0.00592011	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.6	fisher_strand_p_value=0.000718619	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=30/21	major_frequency=7.500e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.500e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=30/21	total_cov=47/21
RA	77	.	1	472204	0	G	A	bias_e_value=2.02679e-05	bias_p_value=9.39094e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.6	fisher_strand_p_value=3.15288e-13	frequency=2.353e-01	ks_quality_p_value=1	major_base=G	major_cov=24/67	major_frequency=7.647e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.353e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=24/67	total_cov=52/67
RA	78	.	1	480684	0	G	T	bias_e_value=4.0307	bias_p_value=1.86759e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.4	fisher_strand_p_value=1.09693e-07	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=31/41	major_frequency=7.500e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=31/41	total_cov=55/41
RA	79	.	1	484610	0	C	A	bias_e_value=0.00293348	bias_p_value=1.3592e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.1	fisher_strand_p_value=5.52074e-11	frequency=2.289e-01	ks_quality_p_value=1	major_base=C	major_cov=52/12	major_frequency=7.711e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.289e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=52/12	total_cov=53/31
RA	80	.	1	485192	0	T	G	bias_e_value=3.0187e-09	bias_p_value=1.39869e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=309.0	fisher_strand_p_value=3.599e-17	frequency=2.903e-01	ks_quality_p_value=1	major_base=T	major_cov=20/68	major_frequency=7.097e-01	minor_base=G	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.903e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=20/68	total_cov=56/68
RA	81	.	1	486342	0	T	G	bias_e_value=1.76839e-06	bias_p_value=8.19368e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.9	fisher_strand_p_value=2.53631e-14	frequency=3.009e-01	ks_quality_p_value=1	major_base=T	major_cov=22/57	major_frequency=6.991e-01	minor_base=G	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.009e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=22/57	total_cov=56/57
RA	82	.	1	487692	0	C	A	bias_e_value=0.0271975	bias_p_value=1.26017e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.9	fisher_strand_p_value=5.65259e-10	frequency=2.234e-01	ks_quality_p_value=1	major_base=C	major_cov=53/20	major_frequency=7.766e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.234e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=53/20	total_cov=53/41
RA	83	.	1	487724	0	C	A	bias_e_value=3.16203e-09	bias_p_value=1.4651e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.7	fisher_strand_p_value=3.77449e-17	frequency=4.267e-01	ks_quality_p_value=1	major_base=C	major_cov=39/4	major_frequency=5.733e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=4.267e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=39/4	total_cov=39/36
RA	84	.	1	516645	0	T	G	bias_e_value=0.000560276	bias_p_value=2.59599e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.0	fisher_strand_p_value=9.85453e-12	frequency=2.785e-01	ks_quality_p_value=1	major_base=T	major_cov=11/46	major_frequency=7.215e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.785e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=11/46	total_cov=33/46
RA	85	.	1	516651	0	C	T	bias_e_value=0.00462622	bias_p_value=2.14352e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.1	fisher_strand_p_value=8.87772e-11	frequency=2.727e-01	ks_quality_p_value=1	major_base=C	major_cov=12/44	major_frequency=7.273e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.727e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=12/44	total_cov=33/44
RA	86	.	1	517971	0	T	A	bias_e_value=0.841403	bias_p_value=3.89857e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.1	fisher_strand_p_value=2.08644e-08	frequency=2.262e-01	ks_quality_p_value=1	major_base=T	major_cov=45/20	major_frequency=7.738e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.262e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=45/20	total_cov=45/39
RA	87	.	1	518023	0	G	A	bias_e_value=0.00399728	bias_p_value=1.8521e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.0	fisher_strand_p_value=7.62266e-11	frequency=3.088e-01	ks_quality_p_value=1	major_base=G	major_cov=38/9	major_frequency=6.912e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=3.088e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=38/9	total_cov=38/30
RA	88	.	1	534430	0	G	A	bias_e_value=0.899985	bias_p_value=4.17e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.6	fisher_strand_p_value=2.24024e-08	frequency=2.019e-01	ks_quality_p_value=1	major_base=G	major_cov=53/30	major_frequency=7.981e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.019e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=53/30	total_cov=53/52
RA	89	.	1	539604	0	T	C	bias_e_value=0.000250533	bias_p_value=1.16082e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.5	fisher_strand_p_value=4.271e-12	frequency=2.404e-01	ks_quality_p_value=1	major_base=T	major_cov=59/20	major_frequency=7.596e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.404e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=59/20	total_cov=59/48
RA	90	.	1	539627	0	G	A	bias_e_value=2.30462e-06	bias_p_value=1.06783e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.2	fisher_strand_p_value=3.33361e-14	frequency=2.936e-01	ks_quality_p_value=1	major_base=G	major_cov=57/20	major_frequency=7.064e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.936e-01	polymorphism_score=26.3	prediction=polymorphism	ref_cov=57/20	total_cov=57/52
RA	91	.	1	539652	0	G	A	bias_e_value=0.0285175	bias_p_value=1.32133e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.8	fisher_strand_p_value=5.94014e-10	frequency=2.130e-01	ks_quality_p_value=1	major_base=G	major_cov=58/27	major_frequency=7.870e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.130e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=58/27	total_cov=58/51
RA	92	.	1	539669	0	A	C	bias_e_value=1.66212e-08	bias_p_value=7.7013e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.2	fisher_strand_p_value=2.07519e-16	frequency=3.636e-01	ks_quality_p_value=1	major_base=A	major_cov=50/13	major_frequency=6.364e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.636e-01	polymorphism_score=21.2	prediction=polymorphism	ref_cov=50/13	total_cov=50/49
RA	93	.	1	539681	0	T	A	bias_e_value=4.34837e-10	bias_p_value=2.01478e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.3	fisher_strand_p_value=4.93204e-18	frequency=4.021e-01	ks_quality_p_value=1	major_base=T	major_cov=48/10	major_frequency=5.979e-01	minor_base=A	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=4.021e-01	polymorphism_score=51.5	prediction=polymorphism	ref_cov=48/10	total_cov=48/49
RA	94	.	1	539697	0	G	A	bias_e_value=0.0052211	bias_p_value=2.41915e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.2	fisher_strand_p_value=1.00719e-10	frequency=3.158e-01	ks_quality_p_value=1	major_base=G	major_cov=43/22	major_frequency=6.842e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.158e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=43/22	total_cov=43/52
RA	95	.	1	547822	0	A	C	bias_e_value=3.60399e-08	bias_p_value=1.66988e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=285.0	fisher_strand_p_value=4.59822e-16	frequency=2.673e-01	ks_quality_p_value=1	major_base=A	major_cov=63/11	major_frequency=7.327e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.673e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=63/11	total_cov=63/39
RA	96	.	1	566208	0	G	A	bias_e_value=0.0565968	bias_p_value=2.62236e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.6	fisher_strand_p_value=1.21824e-09	frequency=2.308e-01	ks_quality_p_value=1	major_base=G	major_cov=50/20	major_frequency=7.692e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.308e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=50/20	total_cov=50/41
RA	97	.	1	566246	0	G	A	bias_e_value=0.307499	bias_p_value=1.42477e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.2	fisher_strand_p_value=7.21508e-09	frequency=2.421e-01	ks_quality_p_value=1	major_base=G	major_cov=47/25	major_frequency=7.579e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.421e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=47/25	total_cov=47/48
RA	98	.	1	573033	0	A	G	bias_e_value=4.12501e-09	bias_p_value=1.91129e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=241.0	fisher_strand_p_value=4.95887e-17	frequency=2.745e-01	ks_quality_p_value=1	major_base=A	major_cov=10/64	major_frequency=7.255e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.745e-01	polymorphism_score=20.3	prediction=polymorphism	ref_cov=10/64	total_cov=39/64
RA	99	.	1	573084	0	C	T	bias_e_value=5.1969e-07	bias_p_value=2.40794e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.3	fisher_strand_p_value=7.17322e-15	frequency=2.455e-01	ks_quality_p_value=1	major_base=C	major_cov=16/67	major_frequency=7.545e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.455e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=16/67	total_cov=43/67
RA	100	.	1	573943	0	A	T	bias_e_value=2.45198e-06	bias_p_value=1.1361e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=424.0	fisher_strand_p_value=3.55386e-14	frequency=2.162e-01	ks_quality_p_value=1	major_base=A	major_cov=87/29	major_frequency=7.838e-01	minor_base=T	minor_cov=1/31	new_cov=1/31	polymorphism_frequency=2.162e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=87/29	total_cov=88/60
RA	101	.	1	573983	0	G	T	bias_e_value=9.55713e-07	bias_p_value=4.42821e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=379.6	fisher_strand_p_value=1.34431e-14	frequency=2.279e-01	ks_quality_p_value=1	major_base=G	major_cov=77/28	major_frequency=7.721e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.279e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=77/28	total_cov=77/59
RA	102	.	1	580736	0	C	T	bias_e_value=6.30234e-06	bias_p_value=2.92013e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.4	fisher_strand_p_value=9.42185e-14	frequency=2.451e-01	ks_quality_p_value=1	major_base=C	major_cov=62/15	major_frequency=7.549e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.451e-01	polymorphism_score=22.4	prediction=polymorphism	ref_cov=62/15	total_cov=62/40
RA	103	.	1	580765	0	A	T	bias_e_value=0.000497948	bias_p_value=2.3072e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=269.3	fisher_strand_p_value=8.92132e-12	frequency=2.222e-01	ks_quality_p_value=0.977176	major_base=A	major_cov=60/17	major_frequency=7.778e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.222e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=60/17	total_cov=60/41
RA	104	.	1	580787	0	C	T	bias_e_value=2.41593e-07	bias_p_value=1.1194e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.8	fisher_strand_p_value=3.25808e-15	frequency=3.152e-01	ks_quality_p_value=1	major_base=C	major_cov=52/11	major_frequency=6.848e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.152e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=52/11	total_cov=52/41
RA	105	.	1	598161	0	A	T	bias_e_value=1.6674	bias_p_value=7.72576e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.5	fisher_strand_p_value=4.32819e-08	frequency=2.000e-01	ks_quality_p_value=0.993769	major_base=A	major_cov=17/47	major_frequency=8.000e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.000e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=17/47	total_cov=33/47
RA	106	.	1	602471	0	G	T	bias_e_value=5.28561e-07	bias_p_value=2.44904e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.5	fisher_strand_p_value=7.50872e-15	frequency=2.473e-01	ks_quality_p_value=0.972131	major_base=G	major_cov=9/61	major_frequency=7.527e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.473e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=9/61	total_cov=32/61
RA	107	.	1	603883	0	A	G	bias_e_value=6.42007e-08	bias_p_value=2.97468e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.8	fisher_strand_p_value=8.32735e-16	frequency=2.243e-01	ks_quality_p_value=1	major_base=A	major_cov=72/11	major_frequency=7.757e-01	minor_base=G	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.243e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=72/11	total_cov=72/36
RA	108	.	1	663979	0	A	G	bias_e_value=3.83237e-05	bias_p_value=1.7757e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.0	fisher_strand_p_value=6.09663e-13	frequency=2.135e-01	ks_quality_p_value=1	major_base=A	major_cov=9/61	major_frequency=7.865e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.135e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=9/61	total_cov=29/61
RA	109	.	1	680445	0	A	T	bias_e_value=0.00287376	bias_p_value=1.33153e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.2	fisher_strand_p_value=5.40365e-11	frequency=2.745e-01	ks_quality_p_value=1	major_base=A	major_cov=50/24	major_frequency=7.255e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.745e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=50/24	total_cov=50/53
RA	110	.	1	680463	0	G	T	bias_e_value=0.0828135	bias_p_value=3.83709e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.9	fisher_strand_p_value=1.82758e-09	frequency=2.427e-01	ks_quality_p_value=0.993796	major_base=G	major_cov=50/28	major_frequency=7.573e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.427e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=50/28	total_cov=50/53
RA	111	.	1	680469	0	G	T	bias_e_value=3.34454e-07	bias_p_value=1.54966e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.3	fisher_strand_p_value=4.5548e-15	frequency=3.495e-01	ks_quality_p_value=1	major_base=G	major_cov=50/17	major_frequency=6.505e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=3.495e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=50/17	total_cov=50/53
RA	112	.	1	710769	0	G	A	bias_e_value=0.000194547	bias_p_value=9.01417e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.4	fisher_strand_p_value=3.28484e-12	frequency=2.785e-01	ks_quality_p_value=1	major_base=G	major_cov=47/10	major_frequency=7.215e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.785e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=47/10	total_cov=47/32
RA	113	.	1	748371	0	C	T	bias_e_value=2.72647	bias_p_value=1.26329e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.6	fisher_strand_p_value=7.24337e-08	frequency=2.368e-01	ks_quality_p_value=1	major_base=C	major_cov=18/40	major_frequency=7.632e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.368e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=18/40	total_cov=36/40
RA	114	.	1	749365	0	A	T	bias_e_value=2.32296e-08	bias_p_value=1.07632e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.9	fisher_strand_p_value=2.9274e-16	frequency=3.229e-01	ks_quality_p_value=1	major_base=A	major_cov=11/54	major_frequency=6.771e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.229e-01	polymorphism_score=37.7	prediction=polymorphism	ref_cov=11/54	total_cov=42/54
RA	115	.	1	749384	0	C	T	bias_e_value=7.50565e-08	bias_p_value=3.47768e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.7	fisher_strand_p_value=9.77945e-16	frequency=3.191e-01	ks_quality_p_value=1	major_base=C	major_cov=11/53	major_frequency=6.809e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.191e-01	polymorphism_score=27.4	prediction=polymorphism	ref_cov=11/53	total_cov=41/53
RA	116	.	1	770742	0	A	C	bias_e_value=4.96542e-08	bias_p_value=2.30068e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.9	fisher_strand_p_value=6.39325e-16	frequency=3.770e-01	ks_quality_p_value=1	major_base=A	major_cov=37/1	major_frequency=6.230e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.770e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=37/1	total_cov=37/24
RA	117	.	1	777241	0	T	C	bias_e_value=1.6201	bias_p_value=7.50659e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.2	fisher_strand_p_value=4.17212e-08	frequency=2.361e-01	ks_quality_p_value=1	major_base=T	major_cov=40/15	major_frequency=7.639e-01	minor_base=C	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.361e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=40/15	total_cov=40/32
RA	118	.	1	778118	0	C	A	bias_e_value=150.294	bias_p_value=6.96373e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.8	fisher_strand_p_value=5.2962e-06	frequency=2.029e-01	ks_quality_p_value=1	major_base=C	major_cov=36/19	major_frequency=7.971e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.029e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=36/19	total_cov=36/33
RA	119	.	1	778149	0	G	A	bias_e_value=0.923329	bias_p_value=4.27816e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.3	fisher_strand_p_value=2.30169e-08	frequency=3.175e-01	ks_quality_p_value=1	major_base=G	major_cov=31/12	major_frequency=6.825e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=3.175e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=31/12	total_cov=31/32
RA	120	.	1	778188	0	C	T	bias_e_value=0.000712601	bias_p_value=3.30177e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.1	fisher_strand_p_value=1.26538e-11	frequency=3.770e-01	ks_quality_p_value=1	major_base=C	major_cov=32/6	major_frequency=6.230e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.770e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=32/6	total_cov=32/30
RA	121	.	1	781959	0	T	G	bias_e_value=3.35308e-06	bias_p_value=1.55362e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.2	fisher_strand_p_value=4.90952e-14	frequency=3.793e-01	ks_quality_p_value=1	major_base=T	major_cov=2/34	major_frequency=6.207e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.793e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=2/34	total_cov=24/34
RA	122	.	1	781966	0	T	C	bias_e_value=70.2225	bias_p_value=3.25369e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.5	fisher_strand_p_value=2.32905e-06	frequency=2.698e-01	ks_quality_p_value=1	major_base=T	major_cov=13/33	major_frequency=7.302e-01	minor_base=C	minor_cov=16/1	new_cov=16/1	polymorphism_frequency=2.698e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=13/33	total_cov=29/34
RA	123	.	1	781982	0	G	A	bias_e_value=0.0736462	bias_p_value=3.41233e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.4	fisher_strand_p_value=1.60583e-09	frequency=3.279e-01	ks_quality_p_value=1	major_base=G	major_cov=9/32	major_frequency=6.721e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=3.279e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=9/32	total_cov=29/32
RA	124	.	1	785145	0	T	A	bias_e_value=0.21165	bias_p_value=9.8066e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.1	fisher_strand_p_value=4.86913e-09	frequency=2.079e-01	ks_quality_p_value=1	major_base=T	major_cov=54/26	major_frequency=7.921e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.079e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=54/26	total_cov=54/47
RA	125	.	1	789316	0	A	T	bias_e_value=2.01822	bias_p_value=9.35125e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.0	fisher_strand_p_value=5.26549e-08	frequency=2.436e-01	ks_quality_p_value=1	major_base=A	major_cov=19/40	major_frequency=7.564e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.436e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=19/40	total_cov=38/40
RA	126	.	1	789336	0	T	A	bias_e_value=4.19378e-05	bias_p_value=1.94315e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.6	fisher_strand_p_value=6.69301e-13	frequency=3.289e-01	ks_quality_p_value=1	major_base=T	major_cov=9/42	major_frequency=6.711e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.289e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=9/42	total_cov=34/42
RA	127	.	1	789340	0	G	A	bias_e_value=2.78314e-10	bias_p_value=1.28954e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.0	fisher_strand_p_value=3.12176e-18	frequency=4.079e-01	ks_quality_p_value=1	major_base=G	major_cov=3/42	major_frequency=5.921e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=4.079e-01	polymorphism_score=36.4	prediction=polymorphism	ref_cov=3/42	total_cov=34/42
RA	128	.	1	789357	0	G	T	bias_e_value=0.00187764	bias_p_value=8.6999e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.1	fisher_strand_p_value=3.46819e-11	frequency=3.108e-01	ks_quality_p_value=1	major_base=G	major_cov=11/40	major_frequency=6.892e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.108e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=11/40	total_cov=34/40
RA	129	.	1	789376	0	A	T	bias_e_value=0.0672924	bias_p_value=3.11793e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.5	fisher_strand_p_value=1.46078e-09	frequency=2.985e-01	ks_quality_p_value=1	major_base=A	major_cov=11/36	major_frequency=7.015e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.985e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=11/36	total_cov=33/36
RA	130	.	1	789389	0	C	T	bias_e_value=0.00275258	bias_p_value=1.27538e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.8	fisher_strand_p_value=5.16637e-11	frequency=3.286e-01	ks_quality_p_value=1	major_base=C	major_cov=10/37	major_frequency=6.714e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.286e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=10/37	total_cov=34/37
RA	131	.	1	794766	0	G	T	bias_e_value=0.000208442	bias_p_value=9.65798e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.5	fisher_strand_p_value=3.56447e-12	frequency=2.386e-01	ks_quality_p_value=0.989955	major_base=G	major_cov=55/12	major_frequency=7.614e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.386e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=55/12	total_cov=55/34
RA	132	.	1	795420	0	C	T	bias_e_value=0.0211167	bias_p_value=9.78424e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.6	fisher_strand_p_value=4.33725e-10	frequency=3.158e-01	ks_quality_p_value=1	major_base=C	major_cov=6/33	major_frequency=6.842e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=3.158e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=6/33	total_cov=26/33
RA	133	.	1	805101	0	C	T	bias_e_value=6.53782e-07	bias_p_value=3.02924e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.0	fisher_strand_p_value=9.08814e-15	frequency=2.360e-01	ks_quality_p_value=1	major_base=C	major_cov=61/7	major_frequency=7.640e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.360e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=61/7	total_cov=61/28
RA	134	.	1	835830	0	T	G	bias_e_value=0.170158	bias_p_value=7.88413e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.5	fisher_strand_p_value=3.87048e-09	frequency=2.913e-01	ks_quality_p_value=1	major_base=T	major_cov=31/42	major_frequency=7.087e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.913e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=31/42	total_cov=61/42
RA	135	.	1	850608	0	T	G	bias_e_value=0.00385863	bias_p_value=1.78786e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.9	fisher_strand_p_value=7.34713e-11	frequency=3.194e-01	ks_quality_p_value=1	major_base=T	major_cov=11/38	major_frequency=6.806e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.194e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=11/38	total_cov=36/38
RA	136	.	1	863134	0	G	A	consensus_score=192.7	frequency=1	major_base=A	major_cov=23/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/24
RA	137	.	1	872032	0	C	T	bias_e_value=0.987929	bias_p_value=4.57748e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.6	fisher_strand_p_value=2.47223e-08	frequency=2.909e-01	ks_quality_p_value=1	major_base=C	major_cov=31/8	major_frequency=7.091e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.909e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=31/8	total_cov=32/24
RA	138	.	1	892584	0	T	C	bias_e_value=1.38513e-08	bias_p_value=6.41787e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.3	fisher_strand_p_value=1.72067e-16	frequency=3.258e-01	ks_quality_p_value=1	major_base=T	major_cov=8/52	major_frequency=6.742e-01	minor_base=C	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.258e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=8/52	total_cov=37/52
RA	139	.	1	892600	0	G	A	bias_e_value=2.36196e-06	bias_p_value=1.09439e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.8	fisher_strand_p_value=3.41926e-14	frequency=3.372e-01	ks_quality_p_value=1	major_base=G	major_cov=11/46	major_frequency=6.628e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.372e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=11/46	total_cov=40/46
RA	140	.	1	892603	0	C	A	bias_e_value=0.0172642	bias_p_value=7.99922e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.0	fisher_strand_p_value=3.51315e-10	frequency=2.738e-01	ks_quality_p_value=1	major_base=C	major_cov=17/44	major_frequency=7.262e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.738e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=17/44	total_cov=40/44
RA	141	.	1	892605	0	G	A	bias_e_value=0.0422603	bias_p_value=1.95809e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.1	fisher_strand_p_value=8.96888e-10	frequency=2.588e-01	ks_quality_p_value=1	major_base=G	major_cov=18/45	major_frequency=7.412e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.588e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=18/45	total_cov=40/45
RA	142	.	1	892614	0	A	T	bias_e_value=0.00017484	bias_p_value=8.10106e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.5	fisher_strand_p_value=2.94022e-12	frequency=3.068e-01	ks_quality_p_value=1	major_base=A	major_cov=15/46	major_frequency=6.932e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.068e-01	polymorphism_score=25.7	prediction=polymorphism	ref_cov=15/46	total_cov=42/46
RA	143	.	1	901520	0	T	G	bias_e_value=8.83476	bias_p_value=4.09351e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.4	fisher_strand_p_value=2.52833e-07	frequency=2.414e-01	ks_quality_p_value=1	major_base=T	major_cov=26/40	major_frequency=7.586e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.414e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=26/40	total_cov=47/40
RA	144	.	1	918567	0	C	T	bias_e_value=1.21452	bias_p_value=5.62735e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.4	fisher_strand_p_value=3.07553e-08	frequency=2.553e-01	ks_quality_p_value=1	major_base=C	major_cov=28/42	major_frequency=7.447e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.553e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=28/42	total_cov=52/42
RA	145	.	1	933698	0	G	C	bias_e_value=5.34637	bias_p_value=2.47719e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.3	fisher_strand_p_value=1.4811e-07	frequency=2.429e-01	ks_quality_p_value=1	major_base=G	major_cov=37/16	major_frequency=7.571e-01	minor_base=C	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.429e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=37/16	total_cov=37/33
RA	146	.	1	959624	0	C	G	bias_e_value=64.7197	bias_p_value=2.99873e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.7	fisher_strand_p_value=2.13312e-06	frequency=2.208e-01	ks_quality_p_value=1	major_base=C	major_cov=37/23	major_frequency=7.792e-01	minor_base=G	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.208e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=37/23	total_cov=37/40
RA	147	.	1	959630	0	C	G	bias_e_value=50.7662	bias_p_value=2.35221e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.8	fisher_strand_p_value=1.7486e-06	frequency=2.152e-01	ks_quality_p_value=0.939437	major_base=C	major_cov=39/23	major_frequency=7.848e-01	minor_base=G	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.152e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=39/23	total_cov=39/41
RA	148	.	1	959670	0	C	G	bias_e_value=0.796432	bias_p_value=3.69019e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.0	fisher_strand_p_value=1.98033e-08	frequency=2.763e-01	ks_quality_p_value=0.994184	major_base=C	major_cov=38/17	major_frequency=7.237e-01	minor_base=G	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.763e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=38/17	total_cov=38/38
RA	149	.	1	959703	0	A	G	bias_e_value=1.796	bias_p_value=8.32162e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.7	fisher_strand_p_value=4.65334e-08	frequency=2.941e-01	ks_quality_p_value=1	major_base=A	major_cov=33/15	major_frequency=7.059e-01	minor_base=G	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.941e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=33/15	total_cov=33/35
RA	150	.	1	959705	0	T	G	bias_e_value=0.101254	bias_p_value=4.69153e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.0	fisher_strand_p_value=2.2431e-09	frequency=3.881e-01	ks_quality_p_value=1	major_base=T	major_cov=31/10	major_frequency=6.119e-01	minor_base=G	minor_cov=1/25	new_cov=1/25	polymorphism_frequency=3.881e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=31/10	total_cov=33/35
RA	151	.	1	959715	0	T	C	bias_e_value=9.03497	bias_p_value=4.18627e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.5	fisher_strand_p_value=2.58945e-07	frequency=3.175e-01	ks_quality_p_value=1	major_base=T	major_cov=28/15	major_frequency=6.825e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=3.175e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=28/15	total_cov=28/35
RA	152	.	1	959722	0	C	T	bias_e_value=6.30634e-16	bias_p_value=2.92198e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.7	fisher_strand_p_value=1.45159e-15	frequency=5.323e-01	ks_quality_p_value=3.68778e-09	major_base=T	major_cov=0/33	major_frequency=5.323e-01	minor_base=C	minor_cov=27/2	new_cov=0/33	polymorphism_frequency=5.323e-01	polymorphism_score=78.3	prediction=polymorphism	ref_cov=27/2	total_cov=27/35
RA	153	.	1	1072166	0	G	A	bias_e_value=0.000191292	bias_p_value=8.86336e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.5	fisher_strand_p_value=3.26752e-12	frequency=3.056e-01	ks_quality_p_value=0.987852	major_base=G	major_cov=42/8	major_frequency=6.944e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.056e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=42/8	total_cov=42/30
RA	154	.	1	1082373	0	A	T	bias_e_value=0.144653	bias_p_value=6.70238e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.2	fisher_strand_p_value=3.47194e-09	frequency=3.103e-01	ks_quality_p_value=0.939818	major_base=A	major_cov=8/32	major_frequency=6.897e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=3.103e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=8/32	total_cov=27/32
RA	155	.	1	1160245	0	G	A	bias_e_value=0.000115682	bias_p_value=5.36003e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.1	fisher_strand_p_value=1.92849e-12	frequency=2.549e-01	ks_quality_p_value=0.993315	major_base=G	major_cov=19/57	major_frequency=7.451e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.549e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=19/57	total_cov=45/57
RA	156	.	1	1160249	0	C	A	bias_e_value=0.00224161	bias_p_value=1.03863e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.3	fisher_strand_p_value=4.17116e-11	frequency=2.404e-01	ks_quality_p_value=1	major_base=C	major_cov=23/56	major_frequency=7.596e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.404e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=23/56	total_cov=48/56
RA	157	.	1	1160834	0	G	A	bias_e_value=0.000565092	bias_p_value=2.6183e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.2	fisher_strand_p_value=9.9426e-12	frequency=3.188e-01	ks_quality_p_value=1	major_base=G	major_cov=8/39	major_frequency=6.812e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.188e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=8/39	total_cov=30/39
RA	158	.	1	1169389	0	G	A	bias_e_value=0.0616184	bias_p_value=2.85503e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.8	fisher_strand_p_value=1.33184e-09	frequency=2.340e-01	ks_quality_p_value=1	major_base=G	major_cov=22/50	major_frequency=7.660e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.340e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=22/50	total_cov=44/50
RA	159	.	1	1169406	0	A	G	bias_e_value=5.22544	bias_p_value=2.42116e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.3	fisher_strand_p_value=1.4455e-07	frequency=2.222e-01	ks_quality_p_value=1	major_base=A	major_cov=26/44	major_frequency=7.778e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.222e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=26/44	total_cov=46/44
RA	160	.	1	1217797	0	C	T	bias_e_value=5.06515e-08	bias_p_value=2.34689e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=118.1	fisher_strand_p_value=6.52537e-16	frequency=3.690e-01	ks_quality_p_value=1	major_base=C	major_cov=8/45	major_frequency=6.310e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.690e-01	polymorphism_score=28.3	prediction=polymorphism	ref_cov=8/45	total_cov=39/45
RA	161	.	1	1217812	0	G	A	bias_e_value=0.0947693	bias_p_value=4.39105e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.7	fisher_strand_p_value=2.11064e-09	frequency=2.593e-01	ks_quality_p_value=0.991395	major_base=G	major_cov=17/43	major_frequency=7.407e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.593e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=17/43	total_cov=38/43
RA	162	.	1	1240351	0	C	T	bias_e_value=0.0387782	bias_p_value=1.79675e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.2	fisher_strand_p_value=8.29346e-10	frequency=2.836e-01	ks_quality_p_value=0.988254	major_base=C	major_cov=10/38	major_frequency=7.164e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.836e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=10/38	total_cov=29/38
RA	163	.	1	1240376	0	C	T	bias_e_value=0.000634801	bias_p_value=2.94129e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.7	fisher_strand_p_value=1.12206e-11	frequency=3.108e-01	ks_quality_p_value=1	major_base=C	major_cov=10/41	major_frequency=6.892e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.108e-01	polymorphism_score=19.4	prediction=polymorphism	ref_cov=10/41	total_cov=33/41
RA	164	.	1	1292988	0	G	A	bias_e_value=1.07243	bias_p_value=4.96901e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.4	fisher_strand_p_value=2.69633e-08	frequency=2.289e-01	ks_quality_p_value=1	major_base=G	major_cov=20/44	major_frequency=7.711e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.289e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=20/44	total_cov=39/44
RA	165	.	1	1302855	0	G	T	bias_e_value=557.734	bias_p_value=0.000258421	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.3	fisher_strand_p_value=2.2045e-05	frequency=2.564e-01	ks_quality_p_value=1	major_base=G	major_cov=29/29	major_frequency=7.436e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.564e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=29/29	total_cov=29/49
RA	166	.	1	1302895	0	C	T	bias_e_value=7.29493	bias_p_value=3.38004e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.6	fisher_strand_p_value=2.06168e-07	frequency=3.188e-01	ks_quality_p_value=1	major_base=C	major_cov=29/18	major_frequency=6.812e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.188e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=29/18	total_cov=29/40
RA	167	.	1	1302907	0	G	A	bias_e_value=0.712412	bias_p_value=3.3009e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.4	fisher_strand_p_value=1.75012e-08	frequency=3.529e-01	ks_quality_p_value=1	major_base=G	major_cov=29/15	major_frequency=6.471e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.529e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=29/15	total_cov=29/41
RA	168	.	1	1343628	0	A	G	bias_e_value=5.15332e-06	bias_p_value=2.38775e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.8	fisher_strand_p_value=7.65276e-14	frequency=2.759e-01	ks_quality_p_value=1	major_base=A	major_cov=10/53	major_frequency=7.241e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.759e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=10/53	total_cov=34/53
RA	169	.	1	1344498	0	T	G	bias_e_value=5.65265e-10	bias_p_value=2.6191e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.0	fisher_strand_p_value=6.45388e-18	frequency=4.321e-01	ks_quality_p_value=1	major_base=T	major_cov=5/41	major_frequency=5.679e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=4.321e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=5/41	total_cov=40/41
RA	170	.	1	1348570	0	G	A	bias_e_value=0.31726	bias_p_value=1.47e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=318.7	fisher_strand_p_value=7.45655e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=37/59	major_frequency=8.000e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.000e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=37/59	total_cov=63/59
RA	171	.	1	1369939	0	C	T	bias_e_value=0.000853123	bias_p_value=3.95287e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.9	fisher_strand_p_value=1.52586e-11	frequency=2.763e-01	ks_quality_p_value=1	major_base=C	major_cov=45/10	major_frequency=7.237e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.763e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=45/10	total_cov=45/33
RA	172	.	1	1369959	0	A	T	bias_e_value=0.0116176	bias_p_value=5.38289e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.5	fisher_strand_p_value=2.32187e-10	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=43/13	major_frequency=7.273e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.727e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=43/13	total_cov=43/34
RA	173	.	1	1376386	0	C	T	bias_e_value=0.345043	bias_p_value=1.59873e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.1	fisher_strand_p_value=8.14607e-09	frequency=2.083e-01	ks_quality_p_value=1	major_base=C	major_cov=52/24	major_frequency=7.917e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.083e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=52/24	total_cov=52/44
RA	174	.	1	1376389	0	C	T	bias_e_value=0.00103952	bias_p_value=4.81654e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.0	fisher_strand_p_value=1.87412e-11	frequency=2.604e-01	ks_quality_p_value=1	major_base=C	major_cov=52/19	major_frequency=7.396e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.604e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=52/19	total_cov=52/44
RA	175	.	1	1377965	0	T	A	bias_e_value=0.0242116	bias_p_value=1.12182e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.9	fisher_strand_p_value=5.00467e-10	frequency=2.353e-01	ks_quality_p_value=1	major_base=T	major_cov=44/8	major_frequency=7.647e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.353e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=44/8	total_cov=44/24
RA	176	.	1	1399131	0	C	A	bias_e_value=1.92459e-05	bias_p_value=8.91739e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.3	fisher_strand_p_value=2.98852e-13	frequency=3.692e-01	ks_quality_p_value=1	major_base=C	major_cov=36/5	major_frequency=6.308e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.692e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=36/5	total_cov=36/29
RA	177	.	1	1449798	0	T	G	bias_e_value=236.221	bias_p_value=0.000109451	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.8	fisher_strand_p_value=8.64654e-06	frequency=2.769e-01	ks_quality_p_value=1	major_base=T	major_cov=20/27	major_frequency=7.231e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.769e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=20/27	total_cov=38/27
RA	178	.	1	1449819	0	C	A	bias_e_value=66.7131	bias_p_value=3.09109e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.3	fisher_strand_p_value=2.20395e-06	frequency=2.769e-01	ks_quality_p_value=1	major_base=C	major_cov=18/29	major_frequency=7.231e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.769e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=18/29	total_cov=36/29
RA	179	.	1	1449829	0	G	T	bias_e_value=1.03207	bias_p_value=4.78202e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.8	fisher_strand_p_value=2.58917e-08	frequency=3.485e-01	ks_quality_p_value=1	major_base=G	major_cov=14/29	major_frequency=6.515e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.485e-01	polymorphism_score=32.1	prediction=polymorphism	ref_cov=14/29	total_cov=37/29
RA	180	.	1	1451219	0	C	A	bias_e_value=1.4419e-05	bias_p_value=6.6809e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.1	fisher_strand_p_value=2.2168e-13	frequency=3.276e-01	ks_quality_p_value=1	major_base=C	major_cov=37/2	major_frequency=6.724e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.276e-01	polymorphism_score=33.2	prediction=polymorphism	ref_cov=37/2	total_cov=37/21
RA	181	.	1	1476336	0	A	C	bias_e_value=0.0471711	bias_p_value=2.18563e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.4	fisher_strand_p_value=1.00642e-09	frequency=3.651e-01	ks_quality_p_value=1	major_base=A	major_cov=30/10	major_frequency=6.349e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.651e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=30/10	total_cov=30/33
RA	182	.	1	1487346	0	A	C	bias_e_value=0.288425	bias_p_value=1.33639e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.1	fisher_strand_p_value=6.74449e-09	frequency=3.115e-01	ks_quality_p_value=1	major_base=A	major_cov=10/32	major_frequency=6.885e-01	minor_base=C	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=3.115e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=10/32	total_cov=30/32
RA	183	.	1	1487374	0	T	A	bias_e_value=3.88206	bias_p_value=1.79872e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.5	fisher_strand_p_value=1.05401e-07	frequency=2.576e-01	ks_quality_p_value=1	major_base=T	major_cov=14/35	major_frequency=7.424e-01	minor_base=A	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.576e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=14/35	total_cov=31/35
RA	184	.	1	1487780	0	C	A	bias_e_value=0.000268429	bias_p_value=1.24374e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.9	fisher_strand_p_value=8.12472e-12	frequency=3.571e-01	ks_quality_p_value=0.564718	major_base=C	major_cov=36/9	major_frequency=6.429e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.571e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=36/9	total_cov=36/35
RA	185	.	1	1488705	0	T	G	bias_e_value=1.42112	bias_p_value=6.58463e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.8	fisher_strand_p_value=3.6317e-08	frequency=3.056e-01	ks_quality_p_value=1	major_base=T	major_cov=17/33	major_frequency=6.944e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.056e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=17/33	total_cov=41/33
RA	186	.	1	1509706	0	G	A	bias_e_value=0.057506	bias_p_value=2.66449e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.1	fisher_strand_p_value=1.27588e-09	frequency=2.472e-01	ks_quality_p_value=0.970916	major_base=G	major_cov=20/47	major_frequency=7.528e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=20/47	total_cov=42/47
RA	187	.	1	1509725	0	G	A	bias_e_value=0.000286093	bias_p_value=1.32559e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.0	fisher_strand_p_value=4.90208e-12	frequency=2.907e-01	ks_quality_p_value=1	major_base=G	major_cov=14/47	major_frequency=7.093e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.907e-01	polymorphism_score=24.0	prediction=polymorphism	ref_cov=14/47	total_cov=40/47
RA	188	.	1	1509744	0	T	G	bias_e_value=1.21839e-07	bias_p_value=5.64531e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.4	fisher_strand_p_value=1.61007e-15	frequency=3.125e-01	ks_quality_p_value=1	major_base=T	major_cov=12/54	major_frequency=6.875e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.125e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=12/54	total_cov=43/54
RA	189	.	1	1509766	0	C	T	bias_e_value=0.00254808	bias_p_value=1.18063e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.5	fisher_strand_p_value=4.767e-11	frequency=2.278e-01	ks_quality_p_value=1	major_base=C	major_cov=10/51	major_frequency=7.722e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.278e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=10/51	total_cov=30/51
RA	190	.	1	1509782	0	G	C	bias_e_value=0.0749861	bias_p_value=3.47441e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.1	fisher_strand_p_value=1.6365e-09	frequency=2.073e-01	ks_quality_p_value=1	major_base=G	major_cov=14/51	major_frequency=7.927e-01	minor_base=C	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.073e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=14/51	total_cov=31/51
RA	191	.	1	1521546	0	G	T	bias_e_value=0.00017882	bias_p_value=8.28545e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.5	fisher_strand_p_value=3.0097e-12	frequency=2.088e-01	ks_quality_p_value=1	major_base=G	major_cov=11/61	major_frequency=7.912e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.088e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=11/61	total_cov=30/61
RA	192	.	1	1524830	0	T	G	bias_e_value=0.140558	bias_p_value=6.51261e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.2	fisher_strand_p_value=3.16595e-09	frequency=3.936e-01	ks_quality_p_value=1	major_base=T	major_cov=14/43	major_frequency=6.064e-01	minor_base=G	minor_cov=32/5	new_cov=32/5	polymorphism_frequency=3.936e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=14/43	total_cov=48/48
RA	193	.	1	1542497	0	A	C	bias_e_value=0.000346697	bias_p_value=1.60639e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.2	fisher_strand_p_value=5.98465e-12	frequency=3.196e-01	ks_quality_p_value=1	major_base=A	major_cov=46/20	major_frequency=6.804e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=3.196e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=46/20	total_cov=46/51
RA	194	.	1	1542542	0	A	C	bias_e_value=2.63333e-07	bias_p_value=1.22013e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.9	fisher_strand_p_value=3.56046e-15	frequency=3.714e-01	ks_quality_p_value=1	major_base=A	major_cov=48/18	major_frequency=6.286e-01	minor_base=C	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=3.714e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=48/18	total_cov=48/57
RA	195	.	1	1554528	0	A	T	bias_e_value=0.00866688	bias_p_value=4.01572e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.8	fisher_strand_p_value=1.70957e-10	frequency=2.118e-01	ks_quality_p_value=1	major_base=A	major_cov=54/13	major_frequency=7.882e-01	minor_base=T	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.118e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=54/13	total_cov=54/31
RA	196	.	1	1554546	0	G	A	bias_e_value=0.0002707	bias_p_value=1.25426e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.6	fisher_strand_p_value=4.62849e-12	frequency=2.326e-01	ks_quality_p_value=1	major_base=G	major_cov=55/11	major_frequency=7.674e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.326e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=55/11	total_cov=55/31
RA	197	.	1	1554550	0	T	A	bias_e_value=0.000164176	bias_p_value=7.60695e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.0	fisher_strand_p_value=2.75436e-12	frequency=2.273e-01	ks_quality_p_value=1	major_base=T	major_cov=57/11	major_frequency=7.727e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.273e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=57/11	total_cov=57/31
RA	198	.	1	1565160	0	A	T	bias_e_value=0.000196749	bias_p_value=9.11621e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.0	fisher_strand_p_value=3.32344e-12	frequency=3.182e-01	ks_quality_p_value=1	major_base=A	major_cov=39/6	major_frequency=6.818e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=3.182e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=39/6	total_cov=39/27
RA	199	.	1	1565169	0	C	T	bias_e_value=7.8957	bias_p_value=3.6584e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.5	fisher_strand_p_value=2.243e-07	frequency=2.239e-01	ks_quality_p_value=1	major_base=C	major_cov=38/14	major_frequency=7.761e-01	minor_base=T	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.239e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=38/14	total_cov=38/30
RA	200	.	1	1565171	0	G	T	bias_e_value=0.00157522	bias_p_value=7.29863e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.7	fisher_strand_p_value=2.88852e-11	frequency=3.016e-01	ks_quality_p_value=1	major_base=G	major_cov=38/6	major_frequency=6.984e-01	minor_base=T	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=3.016e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=38/6	total_cov=38/29
RA	201	.	1	1565177	0	C	A	bias_e_value=0.000124539	bias_p_value=5.77042e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.5	fisher_strand_p_value=2.06792e-12	frequency=3.333e-01	ks_quality_p_value=1	major_base=C	major_cov=38/6	major_frequency=6.667e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.333e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=38/6	total_cov=38/29
RA	202	.	1	1572487	0	G	A	bias_e_value=3.94843e-08	bias_p_value=1.82947e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.6	fisher_strand_p_value=5.05074e-16	frequency=2.202e-01	ks_quality_p_value=1	major_base=G	major_cov=74/11	major_frequency=7.798e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.202e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=74/11	total_cov=74/35
RA	203	.	1	1573037	0	G	A	bias_e_value=0.0968933	bias_p_value=4.48946e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.4	fisher_strand_p_value=2.14175e-09	frequency=2.286e-01	ks_quality_p_value=1	major_base=G	major_cov=10/44	major_frequency=7.714e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.286e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=10/44	total_cov=26/44
RA	204	.	1	1625236	0	C	A	bias_e_value=0.0563792	bias_p_value=2.61228e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.8	fisher_strand_p_value=1.21333e-09	frequency=3.117e-01	ks_quality_p_value=1	major_base=C	major_cov=37/16	major_frequency=6.883e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.117e-01	polymorphism_score=20.5	prediction=polymorphism	ref_cov=37/16	total_cov=37/43
RA	205	.	1	1625241	0	C	T	bias_e_value=121.21	bias_p_value=5.61615e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.9	fisher_strand_p_value=4.19707e-06	frequency=2.179e-01	ks_quality_p_value=1	major_base=C	major_cov=36/25	major_frequency=7.821e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.179e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=36/25	total_cov=36/42
RA	206	.	1	1625252	0	T	C	bias_e_value=0.0036638	bias_p_value=1.69759e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.2	fisher_strand_p_value=6.96071e-11	frequency=3.415e-01	ks_quality_p_value=1	major_base=T	major_cov=38/16	major_frequency=6.585e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.415e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=38/16	total_cov=38/44
RA	207	.	1	1650710	0	C	A	bias_e_value=25.0593	bias_p_value=1.1611e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.1	fisher_strand_p_value=7.70128e-07	frequency=2.192e-01	ks_quality_p_value=1	major_base=C	major_cov=38/19	major_frequency=7.808e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.192e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=38/19	total_cov=38/35
RA	208	.	1	1650782	0	C	T	bias_e_value=0.000427185	bias_p_value=1.97932e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.9	fisher_strand_p_value=7.56471e-12	frequency=3.919e-01	ks_quality_p_value=0.982733	major_base=C	major_cov=34/11	major_frequency=6.081e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.919e-01	polymorphism_score=33.7	prediction=polymorphism	ref_cov=34/11	total_cov=34/41
RA	209	.	1	1650785	0	G	A	bias_e_value=85.38	bias_p_value=3.95601e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.9	fisher_strand_p_value=2.87513e-06	frequency=2.432e-01	ks_quality_p_value=1	major_base=G	major_cov=34/22	major_frequency=7.568e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.432e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=34/22	total_cov=34/41
RA	210	.	1	1659257	0	A	T	bias_e_value=0.00112365	bias_p_value=5.20631e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.5	fisher_strand_p_value=2.03218e-11	frequency=2.167e-01	ks_quality_p_value=1	major_base=A	major_cov=45/2	major_frequency=7.833e-01	minor_base=T	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.167e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=45/2	total_cov=46/15
RA	211	.	1	1669874	0	A	C	bias_e_value=0.00172272	bias_p_value=7.98205e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.6	fisher_strand_p_value=3.17069e-11	frequency=3.205e-01	ks_quality_p_value=1	major_base=A	major_cov=40/13	major_frequency=6.795e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.205e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=40/13	total_cov=40/38
RA	212	.	1	1669888	0	C	A	bias_e_value=2.29822	bias_p_value=1.06486e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.2	fisher_strand_p_value=6.96116e-08	frequency=2.564e-01	ks_quality_p_value=0.868083	major_base=C	major_cov=39/19	major_frequency=7.436e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.564e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=39/19	total_cov=39/39
RA	213	.	1	1697054	0	G	T	bias_e_value=8.68376	bias_p_value=4.02354e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.3	fisher_strand_p_value=2.4823e-07	frequency=2.436e-01	ks_quality_p_value=1	major_base=G	major_cov=21/38	major_frequency=7.564e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.436e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=21/38	total_cov=40/38
RA	214	.	1	1697067	0	C	T	bias_e_value=4.87566	bias_p_value=2.25909e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.9	fisher_strand_p_value=1.34284e-07	frequency=2.410e-01	ks_quality_p_value=1	major_base=C	major_cov=23/40	major_frequency=7.590e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.410e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=23/40	total_cov=43/40
RA	215	.	1	1713982	0	T	A	bias_e_value=0.485261	bias_p_value=2.24841e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.6	fisher_strand_p_value=1.16702e-08	frequency=2.346e-01	ks_quality_p_value=1	major_base=T	major_cov=44/18	major_frequency=7.654e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.346e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=44/18	total_cov=44/37
RA	216	.	1	1713999	0	C	T	bias_e_value=0.000623962	bias_p_value=2.89107e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.7	fisher_strand_p_value=1.10215e-11	frequency=3.038e-01	ks_quality_p_value=1	major_base=C	major_cov=43/12	major_frequency=6.962e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.038e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=43/12	total_cov=43/36
RA	217	.	1	1714036	0	A	C	bias_e_value=1.60015e-05	bias_p_value=7.41414e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.1	fisher_strand_p_value=2.46892e-13	frequency=3.973e-01	ks_quality_p_value=1	major_base=A	major_cov=36/8	major_frequency=6.027e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.973e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=36/8	total_cov=36/37
RA	218	.	1	1727099	0	C	A	bias_e_value=1.71862	bias_p_value=7.96309e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.9	fisher_strand_p_value=4.44127e-08	frequency=2.333e-01	ks_quality_p_value=1	major_base=C	major_cov=45/24	major_frequency=7.667e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.333e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=45/24	total_cov=45/45
RA	219	.	1	1727836	0	C	T	bias_e_value=73.9488	bias_p_value=3.42635e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.9	fisher_strand_p_value=2.46246e-06	frequency=2.667e-01	ks_quality_p_value=1	major_base=C	major_cov=29/15	major_frequency=7.333e-01	minor_base=T	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.667e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=29/15	total_cov=29/31
RA	220	.	1	1739445	0	A	T	bias_e_value=0.0171102	bias_p_value=7.92786e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.8	fisher_strand_p_value=3.48038e-10	frequency=3.281e-01	ks_quality_p_value=1	major_base=A	major_cov=9/34	major_frequency=6.719e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.281e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=9/34	total_cov=30/34
RA	221	.	1	1739494	0	T	A	bias_e_value=2.28966	bias_p_value=1.06089e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.7	fisher_strand_p_value=6.019e-08	frequency=2.609e-01	ks_quality_p_value=1	major_base=T	major_cov=15/36	major_frequency=7.391e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.609e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=15/36	total_cov=33/36
RA	222	.	1	1748618	0	C	T	bias_e_value=0.0896473	bias_p_value=4.15373e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.9	fisher_strand_p_value=1.9739e-09	frequency=2.444e-01	ks_quality_p_value=1	major_base=C	major_cov=47/21	major_frequency=7.556e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.444e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=47/21	total_cov=47/45
RA	223	.	1	1748629	0	T	C	bias_e_value=5.66888e-06	bias_p_value=2.62662e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.8	fisher_strand_p_value=8.44503e-14	frequency=3.516e-01	ks_quality_p_value=1	major_base=T	major_cov=45/14	major_frequency=6.484e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.516e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=45/14	total_cov=46/46
RA	224	.	1	1748634	0	A	C	bias_e_value=4.46321e-10	bias_p_value=2.06799e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.4	fisher_strand_p_value=5.06561e-18	frequency=4.176e-01	ks_quality_p_value=1	major_base=A	major_cov=45/8	major_frequency=5.824e-01	minor_base=C	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=4.176e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=45/8	total_cov=45/46
RA	225	.	1	1748648	0	A	C	bias_e_value=2.39203e-15	bias_p_value=1.10833e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.3	fisher_strand_p_value=2.0823e-23	frequency=4.719e-01	ks_quality_p_value=1	major_base=A	major_cov=45/2	major_frequency=5.281e-01	minor_base=C	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=4.719e-01	polymorphism_score=31.4	prediction=polymorphism	ref_cov=45/2	total_cov=45/44
RA	226	.	1	1752595	0	G	A	bias_e_value=59.0425	bias_p_value=2.73568e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.7	fisher_strand_p_value=1.93242e-06	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=12/36	major_frequency=8.000e-01	minor_base=A	minor_cov=12/0	new_cov=12/0	polymorphism_frequency=2.000e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=12/36	total_cov=24/36
RA	227	.	1	1753325	0	G	A	bias_e_value=0.00130723	bias_p_value=6.05694e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.3	fisher_strand_p_value=2.37883e-11	frequency=2.424e-01	ks_quality_p_value=1	major_base=G	major_cov=5/45	major_frequency=7.576e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.424e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=5/45	total_cov=22/45
RA	228	.	1	1784057	0	T	A	bias_e_value=0.0688685	bias_p_value=3.19096e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=269.7	fisher_strand_p_value=1.4967e-09	frequency=2.022e-01	ks_quality_p_value=1	major_base=T	major_cov=54/17	major_frequency=7.978e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.022e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=54/17	total_cov=54/36
RA	229	.	1	1855582	0	C	T	bias_e_value=0.284408	bias_p_value=1.31778e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.6	fisher_strand_p_value=6.79045e-09	frequency=2.021e-01	ks_quality_p_value=0.97867	major_base=C	major_cov=53/22	major_frequency=7.979e-01	minor_base=T	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.021e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=53/22	total_cov=53/44
RA	230	.	1	1860680	0	A	C	bias_e_value=0.000625283	bias_p_value=2.89719e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.5	fisher_strand_p_value=1.10458e-11	frequency=3.649e-01	ks_quality_p_value=1	major_base=A	major_cov=36/11	major_frequency=6.351e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.649e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=36/11	total_cov=36/38
RA	231	.	1	1862140	0	C	T	bias_e_value=3.68053e-07	bias_p_value=1.70534e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.5	fisher_strand_p_value=5.02695e-15	frequency=3.710e-01	ks_quality_p_value=1	major_base=C	major_cov=2/37	major_frequency=6.290e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.710e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=2/37	total_cov=25/37
RA	232	.	1	1862145	0	C	T	bias_e_value=0.0129442	bias_p_value=5.99756e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.3	fisher_strand_p_value=2.59967e-10	frequency=2.903e-01	ks_quality_p_value=1	major_base=C	major_cov=7/37	major_frequency=7.097e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.903e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=7/37	total_cov=25/37
RA	233	.	1	1862178	0	T	A	bias_e_value=0.00204204	bias_p_value=9.46162e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.8	fisher_strand_p_value=3.78505e-11	frequency=2.941e-01	ks_quality_p_value=1	major_base=T	major_cov=8/40	major_frequency=7.059e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.941e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=8/40	total_cov=28/40
RA	234	.	1	1862191	0	G	A	bias_e_value=8.85907	bias_p_value=4.10477e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.2	fisher_strand_p_value=2.53575e-07	frequency=2.179e-01	ks_quality_p_value=1	major_base=G	major_cov=20/41	major_frequency=7.821e-01	minor_base=A	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.179e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=20/41	total_cov=37/41
RA	235	.	1	1891034	0	A	C	bias_e_value=0.121664	bias_p_value=5.63719e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.4	fisher_strand_p_value=2.72032e-09	frequency=2.883e-01	ks_quality_p_value=1	major_base=A	major_cov=44/35	major_frequency=7.117e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.883e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=44/35	total_cov=44/67
RA	236	.	1	1927480	0	T	C	bias_e_value=38123	bias_p_value=0.0176639	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.6	fisher_strand_p_value=0.00253096	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=12/12	major_frequency=6.667e-01	minor_base=C	minor_cov=12/0	new_cov=12/0	polymorphism_frequency=3.333e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=12/12	total_cov=24/12
RA	237	.	1	1950917	0	T	G	bias_e_value=0.026193	bias_p_value=1.21363e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.1	fisher_strand_p_value=5.4342e-10	frequency=2.407e-01	ks_quality_p_value=1	major_base=T	major_cov=28/54	major_frequency=7.593e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.407e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=28/54	total_cov=54/54
RA	238	.	1	1955449	0	A	T	bias_e_value=6.83142	bias_p_value=3.16528e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.2	fisher_strand_p_value=1.92249e-07	frequency=2.656e-01	ks_quality_p_value=1	major_base=A	major_cov=14/33	major_frequency=7.344e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.656e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=14/33	total_cov=31/33
RA	239	.	1	1958320	0	A	G	bias_e_value=263796	bias_p_value=0.122227	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.3	fisher_strand_p_value=0.0263669	frequency=2.899e-01	ks_quality_p_value=1	major_base=A	major_cov=38/11	major_frequency=7.101e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.899e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=38/11	total_cov=58/11
RA	240	.	1	1958323	0	T	G	bias_e_value=140686	bias_p_value=0.0651858	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.1	fisher_strand_p_value=0.0120252	frequency=3.433e-01	ks_quality_p_value=1	major_base=T	major_cov=34/10	major_frequency=6.567e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.433e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=34/10	total_cov=58/10
RA	241	.	1	1958330	0	C	T	bias_e_value=9.62481e-06	bias_p_value=4.45957e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.8	fisher_strand_p_value=4.64261e-05	frequency=5.507e-01	ks_quality_p_value=3.1437e-09	major_base=T	major_cov=38/0	major_frequency=5.507e-01	minor_base=C	minor_cov=20/11	new_cov=38/0	polymorphism_frequency=5.507e-01	polymorphism_score=67.9	prediction=polymorphism	ref_cov=20/11	total_cov=58/11
RA	242	.	1	1958352	0	T	G	bias_e_value=27331.3	bias_p_value=0.0126637	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.4	fisher_strand_p_value=0.00171924	frequency=4.179e-01	ks_quality_p_value=1	major_base=T	major_cov=28/11	major_frequency=5.821e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=4.179e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=28/11	total_cov=56/11
RA	243	.	1	1958363	0	C	G	bias_e_value=156717	bias_p_value=0.0726136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.4	fisher_strand_p_value=0.0137316	frequency=3.088e-01	ks_quality_p_value=1	major_base=C	major_cov=36/11	major_frequency=6.912e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.088e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=36/11	total_cov=57/11
RA	244	.	1	1958371	0	T	G	bias_e_value=3.50169e-10	bias_p_value=1.62248e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.2	fisher_strand_p_value=1.15357e-06	frequency=6.571e-01	ks_quality_p_value=3.42437e-12	major_base=G	major_cov=46/0	major_frequency=6.571e-01	minor_base=T	minor_cov=13/11	new_cov=46/0	polymorphism_frequency=6.571e-01	polymorphism_score=83.3	prediction=polymorphism	ref_cov=13/11	total_cov=59/11
RA	245	.	1	1958392	0	T	G	bias_e_value=3.04219e-09	bias_p_value=1.40957e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.0	fisher_strand_p_value=8.9762e-07	frequency=5.417e-01	ks_quality_p_value=4.04151e-11	major_base=G	major_cov=39/0	major_frequency=5.417e-01	minor_base=T	minor_cov=18/15	new_cov=39/0	polymorphism_frequency=5.417e-01	polymorphism_score=115.2	prediction=polymorphism	ref_cov=18/15	total_cov=57/15
RA	246	.	1	1982764	0	G	T	bias_e_value=9.90165e-06	bias_p_value=4.58784e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.0	fisher_strand_p_value=1.50292e-13	frequency=3.220e-01	ks_quality_p_value=1	major_base=G	major_cov=2/38	major_frequency=6.780e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=3.220e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=2/38	total_cov=21/38
RA	247	.	1	1984284	0	G	A	bias_e_value=355.238	bias_p_value=0.000164596	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.7	fisher_strand_p_value=1.34753e-05	frequency=2.982e-01	ks_quality_p_value=1	major_base=G	major_cov=24/16	major_frequency=7.018e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.982e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=24/16	total_cov=24/33
RA	248	.	1	1988442	0	T	A	bias_e_value=1.15769e-09	bias_p_value=5.36407e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.9	fisher_strand_p_value=1.34618e-17	frequency=3.908e-01	ks_quality_p_value=1	major_base=T	major_cov=7/46	major_frequency=6.092e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.908e-01	polymorphism_score=30.5	prediction=polymorphism	ref_cov=7/46	total_cov=41/46
RA	249	.	1	1988446	0	T	A	bias_e_value=0.0502806	bias_p_value=2.3297e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.6	fisher_strand_p_value=1.07608e-09	frequency=2.529e-01	ks_quality_p_value=1	major_base=T	major_cov=19/46	major_frequency=7.471e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.529e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=19/46	total_cov=41/46
RA	250	.	1	1988471	0	T	A	bias_e_value=2.11442e-05	bias_p_value=9.79698e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.6	fisher_strand_p_value=3.29404e-13	frequency=3.011e-01	ks_quality_p_value=1	major_base=T	major_cov=15/50	major_frequency=6.989e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.011e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=15/50	total_cov=43/50
RA	251	.	1	1988485	0	G	A	bias_e_value=0.0512124	bias_p_value=2.37288e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.6	fisher_strand_p_value=1.097e-09	frequency=2.347e-01	ks_quality_p_value=1	major_base=G	major_cov=24/51	major_frequency=7.653e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.347e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=24/51	total_cov=47/51
RA	252	.	1	1988513	0	T	A	bias_e_value=7.93626e-05	bias_p_value=3.67719e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.6	fisher_strand_p_value=1.29608e-12	frequency=3.043e-01	ks_quality_p_value=1	major_base=T	major_cov=16/48	major_frequency=6.957e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=3.043e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=16/48	total_cov=44/48
RA	253	.	1	1988529	0	C	A	bias_e_value=0.00131164	bias_p_value=6.07736e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.4	fisher_strand_p_value=2.38718e-11	frequency=2.874e-01	ks_quality_p_value=1	major_base=C	major_cov=16/46	major_frequency=7.126e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.874e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=16/46	total_cov=41/46
RA	254	.	1	1988566	0	G	T	bias_e_value=0.00444522	bias_p_value=2.05965e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.3	fisher_strand_p_value=8.51571e-11	frequency=2.532e-01	ks_quality_p_value=1	major_base=G	major_cov=12/47	major_frequency=7.468e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.532e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=12/47	total_cov=32/47
RA	255	.	1	1989202	0	T	G	bias_e_value=1.38969e-06	bias_p_value=6.43901e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.7	fisher_strand_p_value=2.00536e-14	frequency=3.580e-01	ks_quality_p_value=0.986324	major_base=T	major_cov=9/43	major_frequency=6.420e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.580e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=9/43	total_cov=38/43
RA	256	.	1	1989239	0	A	T	bias_e_value=0.000657499	bias_p_value=3.04646e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.8	fisher_strand_p_value=1.1638e-11	frequency=2.700e-01	ks_quality_p_value=1	major_base=A	major_cov=21/52	major_frequency=7.300e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.700e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=21/52	total_cov=49/53
RA	257	.	1	2006887	0	T	A	bias_e_value=0.0173618	bias_p_value=8.04443e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.8	fisher_strand_p_value=3.53393e-10	frequency=3.077e-01	ks_quality_p_value=1	major_base=T	major_cov=36/9	major_frequency=6.923e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=3.077e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=36/9	total_cov=36/29
RA	258	.	1	2077555	0	A	T	bias_e_value=1.58547e-05	bias_p_value=7.34614e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.8	fisher_strand_p_value=2.44551e-13	frequency=3.095e-01	ks_quality_p_value=1	major_base=A	major_cov=11/47	major_frequency=6.905e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.095e-01	polymorphism_score=21.6	prediction=polymorphism	ref_cov=11/47	total_cov=37/47
RA	259	.	1	2077559	0	A	T	bias_e_value=0.019242	bias_p_value=8.91561e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.5	fisher_strand_p_value=3.93523e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=16/47	major_frequency=7.500e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.500e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=16/47	total_cov=37/47
RA	260	.	1	2077574	0	C	A	bias_e_value=3.22749e-05	bias_p_value=1.49543e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.3	fisher_strand_p_value=5.1032e-13	frequency=2.588e-01	ks_quality_p_value=1	major_base=C	major_cov=10/53	major_frequency=7.412e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.588e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=10/53	total_cov=32/53
RA	261	.	1	2086170	0	T	A	bias_e_value=0.791403	bias_p_value=3.66689e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=182.7	fisher_strand_p_value=1.95568e-08	frequency=2.361e-01	ks_quality_p_value=1	major_base=T	major_cov=41/14	major_frequency=7.639e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.361e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=41/14	total_cov=41/32
RA	262	.	1	2110683	0	G	T	bias_e_value=0.000415972	bias_p_value=1.92737e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.3	fisher_strand_p_value=7.23146e-12	frequency=2.740e-01	ks_quality_p_value=1	major_base=G	major_cov=8/45	major_frequency=7.260e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.740e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=8/45	total_cov=28/45
RA	263	.	1	2118393	0	A	T	bias_e_value=0.504665	bias_p_value=2.33832e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.4	fisher_strand_p_value=1.22664e-08	frequency=2.286e-01	ks_quality_p_value=0.99157	major_base=A	major_cov=12/42	major_frequency=7.714e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.286e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=12/42	total_cov=28/42
RA	264	.	1	2118403	0	A	G	bias_e_value=5.81837e-05	bias_p_value=2.69589e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.2	fisher_strand_p_value=9.3955e-13	frequency=3.235e-01	ks_quality_p_value=1	major_base=A	major_cov=6/40	major_frequency=6.765e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=3.235e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=6/40	total_cov=28/40
RA	265	.	1	2123123	0	C	A	bias_e_value=0.00395756	bias_p_value=1.8337e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.6	fisher_strand_p_value=7.54368e-11	frequency=2.969e-01	ks_quality_p_value=1	major_base=C	major_cov=38/7	major_frequency=7.031e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.969e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=38/7	total_cov=38/26
RA	266	.	1	2123139	0	C	A	bias_e_value=0.00260821	bias_p_value=1.20849e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=112.6	fisher_strand_p_value=4.88429e-11	frequency=3.750e-01	ks_quality_p_value=1	major_base=C	major_cov=30/5	major_frequency=6.250e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=3.750e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=30/5	total_cov=30/26
RA	267	.	1	2125646	0	G	A	bias_e_value=0.405048	bias_p_value=1.87676e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.8	fisher_strand_p_value=1.0206e-08	frequency=2.258e-01	ks_quality_p_value=0.945112	major_base=G	major_cov=24/48	major_frequency=7.742e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.258e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=24/48	total_cov=45/48
RA	268	.	1	2144294	0	G	A	bias_e_value=0.131419	bias_p_value=6.0892e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.3	fisher_strand_p_value=2.94999e-09	frequency=2.639e-01	ks_quality_p_value=1	major_base=G	major_cov=40/13	major_frequency=7.361e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.639e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=40/13	total_cov=40/33
RA	269	.	1	2144319	0	A	C	bias_e_value=7.75907e-11	bias_p_value=3.5951e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.8	fisher_strand_p_value=8.4359e-19	frequency=4.615e-01	ks_quality_p_value=1	major_base=A	major_cov=39/3	major_frequency=5.385e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=4.615e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=39/3	total_cov=39/39
RA	270	.	1	2145247	0	G	T	bias_e_value=0.00528581	bias_p_value=2.44913e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=291.8	fisher_strand_p_value=1.02022e-10	frequency=2.211e-01	ks_quality_p_value=1	major_base=G	major_cov=56/18	major_frequency=7.789e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.211e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=56/18	total_cov=56/40
RA	271	.	1	2145262	0	A	T	bias_e_value=0.000513212	bias_p_value=2.37792e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.2	fisher_strand_p_value=8.9956e-12	frequency=2.717e-01	ks_quality_p_value=1	major_base=A	major_cov=54/13	major_frequency=7.283e-01	minor_base=T	minor_cov=1/24	new_cov=1/24	polymorphism_frequency=2.717e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=54/13	total_cov=55/37
RA	272	.	1	2145269	0	G	C	bias_e_value=0.019646	bias_p_value=9.10279e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.8	fisher_strand_p_value=4.02171e-10	frequency=2.174e-01	ks_quality_p_value=1	major_base=G	major_cov=54/18	major_frequency=7.826e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.174e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=54/18	total_cov=54/39
RA	273	.	1	2145281	0	A	C	bias_e_value=5.42193e-07	bias_p_value=2.5122e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.5	fisher_strand_p_value=7.49358e-15	frequency=3.077e-01	ks_quality_p_value=1	major_base=A	major_cov=52/11	major_frequency=6.923e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.077e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=52/11	total_cov=52/39
RA	274	.	1	2152602	0	C	T	bias_e_value=6.84228e-06	bias_p_value=3.17031e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.3	fisher_strand_p_value=1.06746e-13	frequency=3.191e-01	ks_quality_p_value=0.960892	major_base=C	major_cov=15/49	major_frequency=6.809e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.191e-01	polymorphism_score=28.4	prediction=polymorphism	ref_cov=15/49	total_cov=46/49
JC	275	.	1	1	1	1	2158238	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=45	coverage_plus=51	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=228	key=1__1__1__1__2158238__-1__0____251__251__0__0	max_left=249	max_left_minus=246	max_left_plus=249	max_min_left=123	max_min_left_minus=119	max_min_left_plus=123	max_min_right=124	max_min_right_minus=124	max_min_right_plus=121	max_pos_hash_score=458	max_right=249	max_right_minus=249	max_right_plus=179	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.07	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=228	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=228	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	276	.	1	10633	-1	1	10649	-1	0	alignment_overlap=10	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=2.906e-02	junction_possible_overlap_registers=218	key=1__10633__-1__1__10659__-1__10____251__251__0__0	max_left=122	max_left_minus=122	max_left_plus=0	max_min_left=84	max_min_left_minus=84	max_min_left_plus=0	max_min_right=118	max_min_right_minus=118	max_min_right_plus=0	max_pos_hash_score=438	max_right=162	max_right_minus=162	max_right_plus=0	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.906e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.16	side_1_overlap=10	side_1_possible_overlap_registers=228	side_1_read_count=104	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=3
JC	277	.	1	79041	-1	1	79042	1	-7	alignment_overlap=-7	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.263e-01	junction_possible_overlap_registers=221	key=1__79041__-1__1__79042__1__-7__CAGAAGC__251__251__0__0	max_left=177	max_left_minus=25	max_left_plus=177	max_min_left=25	max_min_left_minus=25	max_min_left_plus=0	max_min_right=122	max_min_right_minus=0	max_min_right_plus=122	max_pos_hash_score=384	max_right=219	max_right_minus=219	max_right_plus=122	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.11	new_junction_read_count=10	polymorphism_frequency=1.263e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=30	side_1_coverage=0.74	side_1_overlap=0	side_1_possible_overlap_registers=198	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=228	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=CAGAAGC
JC	278	.	1	243948	-1	1	243955	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.089e-02	junction_possible_overlap_registers=218	key=1__243948__-1__1__243965__-1__10____251__251__0__0	max_left=47	max_left_minus=47	max_left_plus=44	max_min_left=47	max_min_left_minus=47	max_min_left_plus=44	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=438	max_right=202	max_right_minus=202	max_right_plus=152	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.089e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=10	side_1_possible_overlap_registers=228	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
JC	279	.	1	264873	1	1	265012	1	0	alignment_overlap=17	coverage_minus=3	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=211	key=1__264873__1__1__264995__1__17____251__251__1__1	max_left=103	max_left_minus=103	max_left_plus=18	max_min_left=103	max_min_left_minus=103	max_min_left_plus=18	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=424	max_right=215	max_right_minus=168	max_right_plus=215	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=17	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	280	.	1	267054	-1	1	267143	-1	0	alignment_overlap=5	coverage_minus=4	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=223	key=1__267054__-1__1__267148__-1__5____251__251__1__1	max_left=167	max_left_minus=167	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=49	max_min_right_minus=49	max_min_right_plus=0	max_pos_hash_score=448	max_right=49	max_right_minus=49	max_right_plus=0	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=5	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	281	.	1	318813	1	1	319128	1	0	alignment_overlap=21	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.069e-02	junction_possible_overlap_registers=207	key=1__318813__1__1__319107__1__21____251__251__0__0	max_left=85	max_left_minus=8	max_left_plus=85	max_min_left=85	max_min_left_minus=8	max_min_left_plus=85	max_min_right=43	max_min_right_minus=0	max_min_right_plus=43	max_pos_hash_score=416	max_right=222	max_right_minus=222	max_right_plus=145	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.069e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=21	side_1_possible_overlap_registers=228	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=3
JC	282	.	1	318833	-1	1	319106	-1	0	alignment_overlap=21	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=5.229e-02	junction_possible_overlap_registers=207	key=1__318833__-1__1__319127__-1__21____251__251__0__0	max_left=152	max_left_minus=125	max_left_plus=152	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=105	max_min_right_minus=105	max_min_right_plus=78	max_pos_hash_score=416	max_right=105	max_right_minus=105	max_right_plus=78	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=5.229e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=21	side_1_possible_overlap_registers=228	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=207	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=3
JC	283	.	1	455671	-1	1	455716	-1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=4.352e-02	junction_possible_overlap_registers=219	key=1__455671__-1__1__455725__-1__9____251__251__0__0	max_left=111	max_left_minus=111	max_left_plus=0	max_min_left=111	max_min_left_minus=111	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=440	max_right=200	max_right_minus=200	max_right_plus=0	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.352e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=9	side_1_possible_overlap_registers=228	side_1_read_count=80	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=219	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=3
JC	284	.	1	742965	1	1	743424	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.665e-02	junction_possible_overlap_registers=219	key=1__742965__1__1__743415__1__9____251__251__0__0	max_left=182	max_left_minus=182	max_left_plus=170	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=103	max_min_right_minus=60	max_min_right_plus=103	max_pos_hash_score=440	max_right=103	max_right_minus=60	max_right_plus=103	neg_log10_pos_hash_p_value=8.8	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.665e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.92	side_1_overlap=9	side_1_possible_overlap_registers=228	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=219	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=3
JC	285	.	1	776496	-1	1	776626	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=3.431e-02	junction_possible_overlap_registers=225	key=1__776496__-1__1__776629__-1__3____251__251__0__0	max_left=226	max_left_minus=226	max_left_plus=127	max_min_left=120	max_min_left_minus=0	max_min_left_plus=120	max_min_right=121	max_min_right_minus=22	max_min_right_plus=121	max_pos_hash_score=452	max_right=128	max_right_minus=22	max_right_plus=128	neg_log10_pos_hash_p_value=8.9	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.431e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=3	side_1_possible_overlap_registers=228	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=225	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=3
JC	286	.	1	858615	-1	1	859377	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=5.802e-02	junction_possible_overlap_registers=218	key=1__858615__-1__1__859387__-1__10____251__251__0__0	max_left=110	max_left_minus=110	max_left_plus=13	max_min_left=13	max_min_left_minus=0	max_min_left_plus=13	max_min_right=66	max_min_right_minus=66	max_min_right_plus=0	max_pos_hash_score=438	max_right=225	max_right_minus=66	max_right_plus=225	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=5.802e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.40	side_1_overlap=10	side_1_possible_overlap_registers=228	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=3
JC	287	.	1	939637	-1	1	939648	-1	0	alignment_overlap=15	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.584e-02	junction_possible_overlap_registers=213	key=1__939637__-1__1__939663__-1__15____251__251__0__0	max_left=115	max_left_minus=39	max_left_plus=115	max_min_left=115	max_min_left_minus=39	max_min_left_plus=115	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=428	max_right=197	max_right_minus=197	max_right_plus=166	neg_log10_pos_hash_p_value=8.6	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.584e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=15	side_1_possible_overlap_registers=228	side_1_read_count=119	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.37	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=3
JC	288	.	1	941603	1	1	941639	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.339e-02	junction_possible_overlap_registers=217	key=1__941603__1__1__941628__1__11____251__251__0__0	max_left=238	max_left_minus=149	max_left_plus=238	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=48	max_min_right_minus=48	max_min_right_plus=1	max_pos_hash_score=436	max_right=48	max_right_minus=48	max_right_plus=1	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=2.339e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.49	side_1_overlap=11	side_1_possible_overlap_registers=228	side_1_read_count=134	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.44	side_2_overlap=0	side_2_possible_overlap_registers=217	side_2_read_count=123	side_2_redundant=0	total_non_overlap_reads=3
JC	289	.	1	1038626	1	1	1039069	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.634e-02	junction_possible_overlap_registers=221	key=1__1038626__1__1__1039062__1__7____251__251__0__0	max_left=202	max_left_minus=185	max_left_plus=202	max_min_left=76	max_min_left_minus=0	max_min_left_plus=76	max_min_right=59	max_min_right_minus=59	max_min_right_plus=48	max_pos_hash_score=444	max_right=197	max_right_minus=59	max_right_plus=197	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.634e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=7	side_1_possible_overlap_registers=228	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=221	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=4
JC	290	.	1	1337384	1	1	1337378	-1	0	alignment_overlap=33	coverage_minus=18	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=195	key=1__1337384__1__1__1337411__-1__33____251__251__0__0	max_left=210	max_left_minus=188	max_left_plus=210	max_min_left=102	max_min_left_minus=85	max_min_left_plus=102	max_min_right=98	max_min_right_minus=69	max_min_right_plus=98	max_pos_hash_score=392	max_right=213	max_right_minus=213	max_right_plus=212	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.55	new_junction_read_count=42	polymorphism_frequency=9.484e-01	pos_hash_score=30	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=33	side_1_possible_overlap_registers=228	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=41
JC	291	.	1	1420800	1	1	1420794	-1	0	alignment_overlap=27	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=6.140e-02	junction_possible_overlap_registers=201	key=1__1420800__1__1__1420821__-1__27____251__251__0__0	max_left=177	max_left_minus=165	max_left_plus=177	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=61	max_min_right_minus=61	max_min_right_plus=47	max_pos_hash_score=404	max_right=61	max_right_minus=61	max_right_plus=47	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=6.140e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.59	side_1_overlap=27	side_1_possible_overlap_registers=228	side_1_read_count=53	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=201	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=3
JC	292	.	1	1593817	-1	1	1593801	-1	0	alignment_overlap=16	coverage_minus=2	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=6.950e-02	junction_possible_overlap_registers=212	key=1__1593817__-1__1__1593817__-1__16____251__251__0__0	max_left=217	max_left_minus=50	max_left_plus=217	max_min_left=61	max_min_left_minus=50	max_min_left_plus=61	max_min_right=6	max_min_right_minus=0	max_min_right_plus=6	max_pos_hash_score=426	max_right=193	max_right_minus=193	max_right_plus=173	neg_log10_pos_hash_p_value=7.5	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.950e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=16	side_1_possible_overlap_registers=228	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=212	side_2_read_count=66	side_2_redundant=0	total_non_overlap_reads=5
JC	293	.	1	1673213	-1	1	1673272	-1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.131e-02	junction_possible_overlap_registers=217	key=1__1673213__-1__1__1673283__-1__11____251__251__0__0	max_left=210	max_left_minus=210	max_left_plus=161	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=60	max_min_right_minus=30	max_min_right_plus=60	max_pos_hash_score=436	max_right=60	max_right_minus=30	max_right_plus=60	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.04	new_junction_read_count=3	polymorphism_frequency=4.131e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=11	side_1_possible_overlap_registers=228	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=217	side_2_read_count=65	side_2_redundant=0	total_non_overlap_reads=3
JC	294	.	1	1903137	1	1	1903132	-1	0	alignment_overlap=76	coverage_minus=3	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=9.292e-02	junction_possible_overlap_registers=152	key=1__1903137__1__1__1903208__-1__76____251__251__0__0	max_left=131	max_left_minus=131	max_left_plus=124	max_min_left=20	max_min_left_minus=11	max_min_left_plus=20	max_min_right=70	max_min_right_minus=56	max_min_right_plus=70	max_pos_hash_score=306	max_right=155	max_right_minus=77	max_right_plus=155	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.12	new_junction_read_count=7	polymorphism_frequency=9.292e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=76	side_1_possible_overlap_registers=228	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=152	side_2_read_count=76	side_2_redundant=0	total_non_overlap_reads=7
JC	295	.	1	1971222	-1	1	1971246	-1	0	alignment_overlap=8	coverage_minus=6	coverage_plus=0	flanking_left=251	flanking_right=251	frequency=8.189e-02	junction_possible_overlap_registers=220	key=1__1971222__-1__1__1971254__-1__8____251__251__0__0	max_left=99	max_left_minus=99	max_left_plus=0	max_min_left=99	max_min_left_minus=99	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=442	max_right=237	max_right_minus=237	max_right_plus=0	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=8.189e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=8	side_1_possible_overlap_registers=228	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=220	side_2_read_count=67	side_2_redundant=0	total_non_overlap_reads=6
JC	296	.	1	1989511	1	1	1989610	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.078e-02	junction_possible_overlap_registers=217	key=1__1989511__1__1__1989599__1__11____251__251__0__0	max_left=227	max_left_minus=79	max_left_plus=227	max_min_left=79	max_min_left_minus=79	max_min_left_plus=0	max_min_right=64	max_min_right_minus=0	max_min_right_plus=64	max_pos_hash_score=436	max_right=160	max_right_minus=160	max_right_plus=64	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=4.078e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=11	side_1_possible_overlap_registers=228	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=217	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=4
JC	297	.	1	2072016	-1	1	2072151	-1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=4.330e-02	junction_possible_overlap_registers=218	key=1__2072016__-1__1__2072161__-1__10____251__251__0__0	max_left=211	max_left_minus=211	max_left_plus=169	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=72	max_min_right_minus=72	max_min_right_plus=48	max_pos_hash_score=438	max_right=72	max_right_minus=72	max_right_plus=48	neg_log10_pos_hash_p_value=8.7	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=4.330e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=10	side_1_possible_overlap_registers=228	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=3
JC	298	.	1	2114749	1	1	2114773	1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=3.821e-02	junction_possible_overlap_registers=222	key=1__2114749__1__1__2114767__1__6____251__251__0__0	max_left=219	max_left_minus=0	max_left_plus=219	max_min_left=33	max_min_left_minus=0	max_min_left_plus=33	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=446	max_right=212	max_right_minus=0	max_right_plus=212	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=3.821e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=6	side_1_possible_overlap_registers=228	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=222	side_2_read_count=103	side_2_redundant=0	total_non_overlap_reads=4
UN	299	.	1	5363	6092
UN	300	.	1	6098	6098
UN	301	.	1	230995	231146
UN	302	.	1	262930	268229
UN	303	.	1	275636	275637
UN	304	.	1	275639	275781
UN	305	.	1	285136	285292
UN	306	.	1	377170	377880
UN	307	.	1	472817	473542
UN	308	.	1	550716	552520
UN	309	.	1	589961	590721
UN	310	.	1	696528	701929
UN	311	.	1	704309	704517
UN	312	.	1	713349	714032
UN	313	.	1	820794	821547
UN	314	.	1	1082784	1087945
UN	315	.	1	1337379	1337383
UN	316	.	1	1480196	1480268
UN	317	.	1	1606314	1611510
UN	318	.	1	1639494	1640329
UN	319	.	1	1703836	1708943
UN	320	.	1	1773344	1773370