| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,958,330 | 0 | C | T | 55.1% | 17.8 / 67.9 | 69 | intergenic (+123889/‑26695) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Reads supporting (aligned to +/- strand): ref base C (20/11); new base T (38/0); total (58/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.64e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.14e-09 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTTTTCTTTTCACAAGCAAAGACAAAATCCAAGGATTTTGAACGTTGGCTTTGCCAATGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCTAAATACACAATGGCTTGCGCAATAGCGCGTTCGCCTTCGGCAGCGCCGACGCGGGTGAAA > 1/1958083‑1958577 | cttttcttttCACAAGCAAAGACAAAATCCAAGGATTTTGAACGTTGGCTTTGCCAATGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGcc < 1:342666/251‑1 (MQ=255) aGCAAAGACAAAATCCAAGGATTTTGAACGTTGGCTTTGCCAATGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGGA‑GTTTTTGCCGGCAGCGGA‑ggggg > 1:347109/1‑248 (MQ=255) aGCAAAGACAAAATCCAAGGATTTTGAACGTTGGCTTTGCCAATGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTGCCGGCCGCGTA‑ggggg > 1:756871/1‑248 (MQ=255) aTCCAAGGATTTTGAACGTTGGCTTTGCCAATGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTGCCGGCAGCGGA‑GGC‑G‑GTAGGTTCATtg > 1:82904/1‑250 (MQ=255) gATTTTGAACGTTGGCTTTGCCAATGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GTTTTTGCCGGCAGCGGA‑gggggtagggttattgttggggtg > 1:83264/1‑229 (MQ=255) ttttGAACGTTGGCTTTGCCAATGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GGTTTCTGCGGCAGGGGA‑GGC‑G‑GTTGGTTCATTGTggggggagg > 1:29938/1‑245 (MQ=255) gAACGTTGGCTTTGCCAATGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGGA‑GGTTTTGCCGGCCGCGGA‑GGC‑G‑TTAGGGTCATTGTTGGCGTGGCgggg > 1:788597/1‑249 (MQ=255) aCGTTGGCTTTGCCAATGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATtg < 1:495741/235‑1 (MQ=255) ggCTTTGCCAATGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTATCGGCCGCGTA‑GGG‑G‑GTAGGTTCATTTGGGGGGTAGCGGGATTTGgcg > 1:787005/1‑251 (MQ=255) aTGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GGTTTTGCCGGCCGCGTA‑GGC‑G‑GTAGGGTCATTGTGGGCGGAGCGGGATTTGGGGCCGAAACCgg > 1:554811/1‑250 (MQ=255) ggTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCTCCGGCAGCGGA‑GGC‑G‑GTAGGTTCATTTTGGGGGTAGCGGGATTTGGCGCCGAAGCCGAgg > 1:775086/1‑251 (MQ=255) tGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGTA‑GTTTTTTCCGGCAGCGGA‑GGCGG‑TTGGGTT‑ATTTTGGGCGGAGCGGGTTTCGGGGCCGGAGCCGAGGGCttttatt > 1:622337/1‑247 (MQ=255) gcgcagcgcaGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGGA‑GTTTTTGCCGGCCGCGGA‑GGC‑G‑GTAGGGTCATTGTGGGCGTAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑GAAg > 1:733233/1‑249 (MQ=255) gcgcagcgcaGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTGCCGGCAGCGTA‑GGG‑G‑TTAGGGTTATTGTGGGGGTAGCGGGATTTGGCGCCGGAGCCGAGGTCTTTCTT‑GAAg > 1:758863/1‑249 (MQ=255) gcgcagcgcaGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTGCCGGCAGCGGA‑GGC‑G‑TTTGGGTCATTTTGGGGGGAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑GAAg > 1:728334/1‑249 (MQ=255) gcgcagTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTTTGGGCGGAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑GAAGCTGGTCg > 1:104253/1‑251 (MQ=255) cagTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGTA‑GTTTTTGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTTTGGGGGTAGCGGGATTCGGCGCCGGAGCCGGGGGCTTTTAT‑GAAGCTGGGCgggg > 1:748355/1‑251 (MQ=255) cagTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGTA‑GGTTTTGCCGGCAGCGTA‑GGG‑G‑TTTGGGTTATTTTGGGGGGAGCGGGATTTGGCGCCGAAGCCGAGGGCTTTTAT‑GAAGCTGGTCgggg > 1:416843/1‑251 (MQ=255) cagTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GTTTTCGCCGGCAGCGTA‑GGG‑G‑GTAGGGTCATTGTGGGGGGAGCGGGATTTGGCGCCGAAGCCGGGGGGTTTCAT‑GAAGCTGGGCgggg > 1:515683/1‑251 (MQ=255) gTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCATAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGGA‑GTTTTCGCCGGCAGCGGA‑GGC‑G‑GTAGGGTTATTTTTGGCGGAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑GAAGCTgggcggggcg > 1:346929/1‑251 (MQ=255) aaGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑GTAGGTTCATTTTGGGCGTAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑GAAGCTGGTCGGGGCGTTgg > 1:601074/1‑250 (MQ=255) aaacaaacCTGTTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GTTTTTGCCGGCCGCGGA‑GGC‑G‑TTAGGTTTATTGTGGGCGTAGCGGGATTTGGCGCCGCAGCCGAGGGCTTTCAT‑GAAGCTGGTCGGGGCGTTGCgggggtgtttcggggg > 1:775313/1‑237 (MQ=255) aaacaaacCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGa < 1:590882/250‑1 (MQ=255) aacCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTGCCGGCAGCGTA‑GGC‑G‑GTAGGGTCATTGTGGGGGGAGCGGGATTCGGCGCCGAAGCCGGGGTCTTTCAt > 1:297085/1‑210 (MQ=255) aacCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTGCCGGCAGCGGA‑GGC‑G‑GTAGGTTCATTGTGGGGGGAGCGGGATTTGGCGCCGAAGCCGAGGGCTTTTAT‑GAAGCTGGTCGGGGCGGTGCGGGGATGTTCAGGGGCGT‑Cgg > 1:756576/1‑250 (MQ=255) ccTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGTA‑GTTTTCGCCGGCAGCGGA‑GGC‑G‑GTAGGGTCATTGTGGGGGTAGCGGGATTTGGCGCCGCAGCCGGGGGCTTTCAT‑GAAGCTGGGCGGGGCGTTGCGGAGGTGTTTAGGGGCGT‑CGaaa > 1:167788/1‑251 (MQ=255) ccTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGGA‑GTTTTTGCCGGCAGCGCA‑GGC‑G‑TTAGGTTCATTTTGGGCGGAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTTAT‑GAAGCTGGTCGGGGCGTTGCGGGGATGTTCTGGGGCGT‑CGaaa > 1:647006/1‑251 (MQ=255) ccTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑GTAGGTTTATTGTGGGGGGAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑GAAGCTGGTCGGGGGGTTGCGGGGATGGTCAGGGACGT‑Cggaa > 1:586246/1‑248 (MQ=255) aTTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCTCCCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTGCCGGCCGCGTA‑GGG‑GTTTGGGTTC‑TTTTGGGGGGAGCGGGATTCGGCGCCGTAGCCGGGGTCtttta > 1:197429/1‑203 (MQ=255) aTTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGTA‑GTTTTTGCCGGCAGCGGA‑GGC‑G‑TTAGGGTCATTGTGGGCGGAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑TAAGCTGGGCGGGGCGGTGCGGGGGTGTTCAGGGGCGT‑CGAAATcg > 1:436893/1‑251 (MQ=255) aTTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTAGGTTTTC‑CCGGCCGCGGA‑GGG‑G‑tttgg > 1:546823/1‑154 (MQ=255) aTTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTGCCGGCAGCGGA‑GGC‑G‑GTTGGTTTATTTTGGGCGGAGCGGGATTTGGCGCCGCAGCCCAGGGCTTTCAT‑TGAGCTGGTCGGGGGGTTGCGGGGAAGTTCAGGGACGG‑CGaaaaag > 1:469507/1‑248 (MQ=255) ttATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGTA‑GGTTTTGCCGGCAGCGTA‑GGG‑G‑GTTGGGTCATTGTGGGGGGAGCGGGGTTTGGGGCCGAAGCCGGGGGCTTTTAT‑TGAGCTGGGCGGGGCGGTGCGGGGATGGTCAGGGGCGT‑CGAAATcggg > 1:220971/1‑250 (MQ=255) ttATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGGA‑GGC‑G‑TTAGGGTCATTGTGGGCGTAGCGGGATTCGGCGCCGGAGCCGAGGGCTTTCAT‑GAAGCTGGTCGGGGGGTTGCGGGGATGGTCAGGGACGG‑CGGAATcgg > 1:380153/1‑250 (MQ=255) cttcttACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GTTTTTGCCGGCAGCGTA‑GGC‑G‑GTAGGGTCATTGTGGGCGGAGCGGGATTCGGCGCCGAAGGCGAGGGCTTTCAT‑GAAGCTGGTCGGGGGGGTGCgggga > 1:395549/1‑217 (MQ=255) tttCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAAtttt < 1:218704/251‑1 (MQ=255) ttCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGTA‑GTTTTTGCCGGCAGCGGA‑GGC‑G‑GTAGGTTCATTGTGGGCGGAGCGGGATTTGGCGCCGGAGCCGAGGGCTTTTAT‑GAAGCTGGTCGGGGCGTTGCGGGGATGTTCAGGGACGT‑CGAAATCGGC‑GGG‑TTCGGGTG‑CCCAttttt > 1:340424/1‑251 (MQ=255) ttCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGGA‑GTTTTTGCCGGCAGCGGA‑GGC‑G‑GTAGGTTCATTTTTGGCGGAGCGGGATTTGGCGCCGAAGCCGAGGGCTTTCAT‑GAAGCTGGTCGGGGGGGTGCGGAGAAGTTTAGGGGCGG‑CGAAATCGGC‑GGG‑TTTGGGTG‑CCCAttttt > 1:464427/1‑251 (MQ=255) ttCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GTTTTCGCCGGCAGCGGA‑GGC‑G‑TTTGGGTCATTGTGGGCGTAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑GAAGCTGGTCGGGGGGTTGCGGGGATGGTCAGGGACGG‑CGGAAACGGC‑GGA‑tttcggtggcacatttt > 1:516549/1‑236 (MQ=255) gATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGTA‑GTTTTTTCCGGGAGCGTA‑GGG‑G‑GTAGGTTTATTGTGGGGGGAGCGGGATTCGGGGCCGGAGCCGGGGGCTTTCAT‑GAAGCTGGGCGGGGGGGTGCGGGGATGTTCAgggg > 1:43183/1‑212 (MQ=255) aTCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGTA‑GTTTTTGCCGGCAGCGGA‑GGC‑G‑GTTGGGTCATTTTGGGCGGAGCGGGATTCGGGGCCGAAGCCGGGGTCTTTCAT‑GAAGCTGGTCGGGGGGTTGCGGGGATGTTCAGGGGCGT‑CGAAATCGGC‑GGAGTCCGGTGC‑CCAATTTTTTgcgg > 1:124523/1‑248 (MQ=255) cccccGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAAAA‑ATTTTTGCCCGCAGCGTA‑GGC‑G‑TTAGGTTTATTTTGGGCGGAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑TAAACCGGTCGGGGCGTTGCGGGGATGGTCAGGGACGT‑CGGAAACGGC‑GGA‑TTCTGGTG‑CCAAtttttttgtgggtttgg > 1:588100/1‑240 (MQ=255) ccccGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGGA‑GGTTTTGCCGGCCGCGTA‑GGC‑G‑TTAGGGTCATTGTGGGCGTAGCGGGATTCGGCGCCGGAGCCGAGGGCTTTCAT‑GAAGCTGGTCGGGGCGGTGCGGGGAAGTTCAGGGGCGT‑CGAAAACGGC‑GGG‑GTCGGGTG‑CCCATTTTTTTGC‑GG‑GTTTgga > 1:785203/1‑249 (MQ=255) cccGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGTA‑GGTTTTGCCGGCAGCGGAGGGG‑G‑TTGGGTT‑ATTGTTGGGGTGGCGGGATTTGGCGCCGGAGCCGAGGGGTTTTAT‑GAAGCTGGTCGGGGGGGTGCGGGGATGTTTAGGGGCGT‑CGGAAACGGCGGGG‑TTGGGTGG‑CCAATTTTTTggggggttttaa > 1:53589/1‑241 (MQ=255) gCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGGTTATTGTGGGGGGAGCGGTATTCGGCGCCGAAGCCGAGGGCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGG‑GTCGGTTG‑CCAATTTTTTTGC‑GG‑Gtttttaaacgaga > 1:258560/1‑241 (MQ=255) tCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAAc < 1:776015/251‑1 (MQ=255) aaCTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGGA‑GTTTTTGCCCGCAGCGGA‑GGC‑G‑GTAGGGTTATTGTGGGGGGAGGGGGATTTGGCGCCGGAGGCGAGGGCTTTTATGGAAAC‑GGGCGGGGGGGTGGGGGGATGTTCAGGGGCGG‑CGAAAACGGCGGGG‑TTGGGTGC‑CCATTTTTTTGGG‑GG‑GTTTGAAAgggggaaaaaagg > 1:56149/1‑239 (MQ=255) t‑cCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GTTTTTGCCGGCAGCGTA‑GGG‑G‑GTAGGGTCCTTTTGGGCGGAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTTAT‑GAAGCTGGGCGGGGGGGTGCGGGGAAGTTCAGGGGCGG‑CGGAATCGGC‑GGG‑ATCGGGTGCCCAATTTTTTGGG‑GC‑CTTTGAAA‑CGAGATaaaaggggggt > 1:26463/1‑241 (MQ=255) ccTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGGGTAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑GAAGCTGGGCGGGGCGTTGCGGAGATGTTTAGGGACGT‑CGAAAACGGC‑GGG‑TTTGGTTG‑GCCATTTTTTGGG‑GGCCTTTGAAA‑CGAGATaaaaagcggttgtt > 1:334019/1‑240 (MQ=255) cttaatTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGGTCATTGTGGGGGTAGCGGGATTTGGGGCCGGAGCCGAGGGCTTTTAT‑GAAGCTGGTCGGGGCGTTGCGGGGGTGTTTAGGGGCGT‑CGAAATCGGC‑GGG‑TTTGGGTGCCCATTTTTTTGGG‑GG‑GTTT‑TAAGCGGGATAAAAGGCGGTG‑CTTTTTGGTg > 1:121868/1‑251 (MQ=255) tCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GTTTTTGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTTTGGGCGTAGCGGGATTCGGCGCCGGAGCCGAGGGCTTTCAT‑GTAGCTGGTCGGGGCGTTTCGGAGATGTTCAGGGGCGT‑CGAAATCGGC‑GGG‑TTTGGGTGCCCAATTTTTT‑GC‑GG‑GTTTTGAAGGGAGATAAACGGCGGTG‑GTTTTTGGTGCGaggg > 1:512623/1‑247 (MQ=255) ccATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCt < 1:574239/251‑1 (MQ=255) ccATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GTTTTCGCCGGCAGCGGA‑GGG‑G‑TTTGGGTCCTTGTGGGGGGAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑GAAGCTGGTCGGGGCGGTGCGGAGATGTTCAGGGAAGT‑CGCAATCGGCGGGA‑TT‑GGTGT‑CCTATTTTTTTGCGGG‑CTTT‑AAAGAGAGAAAAACAGCGTTGCCTTTTCgtgcggcgg > 1:453661/1‑241 (MQ=255) aTGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GTTTTCGCCGGCAGCGGA‑GGC‑G‑GTAGGGTTATTGTGGGCGTAGCGGGATTCGGCGCCCAAACCCAGGGCTTTCAT‑TAAACTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGG‑CGAAAAAGGCGGGA‑TT‑GGCTGCCCATTTTTTTGGG‑GG‑TTTTGAAA‑CGGGAGAAACAGCGTTG‑Ctttttcgttcggcgtgcga > 1:756867/1‑236 (MQ=255) ctGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCTAAATac < 1:204673/249‑1 (MQ=255) ggtCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGGAGGA‑GGTTTTGCCGGCAGCGGA‑GGC‑G‑GTAGGGTCATTGTGGGCGGAGCGGGATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGGCGGGGCGGTGCGGAGATGTTCAGGGGCGG‑CGGAATCGGCGGGG‑TTGGGTGC‑CCATTTTTTTGGG‑GG‑C‑TTGTAAACGAGATAAAAGGGGGTG‑CTTTTTCGTGCGACGGCGaaaaaaacaaatg > 1:750612/1‑241 (MQ=255) aaaTAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTGCCGGCAGCGGA‑GGC‑G‑GTAGGGTCATTGTGGGCGGAGCGGGATTCGGCGCCGGAGCCGAGGGCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGGGATGTTCAGGGGCGG‑CGAAAACGGC‑GGG‑ATCGGGTG‑CCAATTTTTTTGC‑GG‑CCTTTAAAACGAGGTAAAAGGCGGTG‑CTTTTTTGGGCGGCGGCTaaaaaaacaaaagctttcg > 1:393001/1‑234 (MQ=255) aaaTAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GGTTTTGCCGGCCGCGGA‑GGG‑G‑GTCGGGTCCTTGTGGGCGGAGCGGGATTTGGCGCCGGAGCCCAGGGCTTTCAT‑GGAAATGGGCGGGGCGGTTCGGGGGTGTTCAGGGGCGTCCGAATCCGGG‑GGT‑TTGGGTGG‑CAAATTTTTTGG‑‑GG‑CTTTGTAAACGAGGAAAACGGCGGTG‑GTTTTTGGTGCGACGGCGTAATAAACAAAGGCTTgggg > 1:21615/1‑248 (MQ=255) aTAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GTTTTCGCCGGCAGCGGA‑GGC‑G‑GTAGGTTCATTGTGGGCGGAGCGGGATTCGGCGCCGAAGCCGAGGGCTTTCAT‑GAAGCTGGGCGGGGGGTTGCGGGGATGTTCAGGGACGT‑CGAAATCGGC‑GGG‑TTCGGGTT‑CCCATTTTTTTGC‑GG‑GTTTTTAAACGAGGTAAAAGGCGGTG‑CCTTTCGGTGCGGCGGCTAAATACACAAAGGCTTgcgcca > 1:348796/1‑249 (MQ=255) gAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTTGCCGGCAGCGGA‑GGG‑G‑TTTGGGTCATTGTGGGGGTAGCGGGATTTGGCGCCGAAGCCGCGGGCTTTCAT‑GAAGCTGGTCGGGGCGGTGCGGGGGTGTTCAGGGGCGT‑CGAAAACGGC‑GGG‑TTCGGGTG‑CCAATTTTTTTGCGGG‑TTTTGAAA‑CGGGAAAAAAGGGGGTG‑CTTTTTGGGGGGACGGCTAAATAAACAAAGGGTTGCGCAATaa > 1:451930/1‑250 (MQ=255) gAATTGGGTGTCTTTCAGTTGTGGCGGGAAGGA‑GTTTTTGCCGGCAGCGTA‑GGC‑G‑GTAGGGTCATTGTGGGCGTAGCGGGATTCGGCGCCGGAGCCGAGGGCTTTCAT‑GAAGCTGGGCGGGGGGTTGCGGGGATGTTCAGGGACGG‑CGAAAACGGC‑GGG‑TTCGGTTG‑CCCATTTTTTTGC‑GG‑CTTTGTAAACGAGATAAAAGGCGGTG‑GTTTTTTGTGCTGCGGCTAAATACACAAAGGCTTTCGCaaaaa > 1:106001/1‑248 (MQ=255) aaTTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCTAAATACACAATGGCTTGCGCAATAg < 1:667370/250‑1 (MQ=255) aaTTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCTAAATACACAATGGCTTGCGCAATAg < 1:212536/250‑1 (MQ=255) ggCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCTAAATACACAATGGCTTGCGCAATAg > 1:595532/1‑229 (MQ=255) gggAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCTAAATACACAATGGCTTGCGCAATAGCGCGTTCGCCTTCGGCAGCGCCGa > 1:469352/1‑250 (MQ=255) gAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCTAAATACACAATGGCTTGCGCAATAg < 1:812869/224‑1 (MQ=255) gAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCTAAATACACAATGGCTTGCGCAATAGCGCGTTCGCCTTCGGCAGCGCCGAcg > 1:510873/1‑250 (MQ=255) gtTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCTAAATACACAATGGCTTGCGCAATAGCGCGTTCGCCTTCGGCAGCGCCGACGCGGGTGa > 1:499555/1‑251 (MQ=255) tttCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCTAAATACACAATGGCTTGCGCAATAGCGCGTTCGCCTTCGGCAGCGCCGACGCGGGTGaaa < 1:289384/251‑1 (MQ=255) | CTTTTCTTTTCACAAGCAAAGACAAAATCCAAGGATTTTGAACGTTGGCTTTGCCAATGGTACGAAGTGCAAGCGCAGCGCAGTAAAAGTAGGTCGATGCCGAAACAAACCTATTTATATCGCTTCTTACCACTTTCCTGATCTAACCCCCGCAGCCATTCCAACTTCT‑CCTTAATCTTAATTTCCATGCCTCTGGTGGTCGGGAAATAGAATTGGGTGTCTTTCAGTTGTGGCGGGAAGTA‑GTTTTCGCCGGCAGCGTA‑GGC‑G‑TTAGGTTCATTGTGGGCGTAGCGGTATTCGGCGCCGAAGCCGAGGTCTTTCAT‑GAAGCTGGTCGGGGCGTTGCGGAGATGTTCAGGGACGT‑CGAAATCGGC‑GGA‑TTCGGTTG‑CCAATTTTTTGGC‑GG‑CTTTGAAAGCGAGATAAACGGCGTTG‑CTTTTCGGTGCGACGGCTAAATACACAATGGCTTGCGCAATAGCGCGTTCGCCTTCGGCAGCGCCGACGCGGGTGAAA > 1/1958083‑1958577 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |