| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,650,782 | 0 | C | T | 39.2% | 100.9 / 33.7 | 75 | intergenic (‑39312/‑33837) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Reads supporting (aligned to +/- strand): ref base C (34/11); new base T (0/29); total (34/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.56e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AATATGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAC > 1/1650539‑1651014 | aaTATGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAAtt > 1:516750/1‑251 (MQ=255)aaTATGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAAtt > 1:422735/1‑251 (MQ=255) tGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTa > 1:602675/1‑251 (MQ=255) gTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTa > 1:182205/1‑250 (MQ=255) gTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTa > 1:174607/1‑250 (MQ=255) aaCTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTAccgccg > 1:364204/1‑251 (MQ=255) cTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGAt > 1:673247/1‑251 (MQ=255) aaaaacaaaccTATTCAAGTAGAGCTAAAACCGAATTTCGGCAAACCCTCTTTTTTATTCAATGCTCTCAACAGCGGTAAAATTGATATTTATCCTAAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAATTTTTACCCGAACAAAAAAATCATCCCCGCTCTCCTAAACCCACTTATCAGCTGA‑GTAAACAATTCCTGGCGAAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATAc < 1:826981/250‑1 (MQ=255) aaaaaaaaaacTATTCAAGTAGAGCTTAAACCGATTTTCGGCAAACCCTTTTTTTTATTCAATGCTCTCAACAGCGGTAAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGAAAGTGTTCCCCAAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATAc < 1:213212/250‑1 (MQ=255) aaaacTATTCAAGTAGAGCTAAAACCGAATTTCGGAAAAACCTTTTTTTTATTCAATGCTCTAAACAGCGGTAAAATTGATATTTATCCTGAATTTCCCGGCACA‑GTGCTGGAA‑GCCTTAGTGAAAGTGTTACCCAAAAAAAAAAATCATCCCCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTCCCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGc < 1:488125/251‑1 (MQ=255) cTATTCAAGTAGAGCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTa > 1:256196/1‑251 (MQ=255) tttCAAGTAGATTTTAACCCGAATTTCGGCAAAACTTTTTTTTTATTAAATGCTCTCAGCAGCGGTGAATTGGATATTTATCCAAAATTTCCCGGCCCA‑GTGCTGGAA‑GTCTTAGTGCAAGTGTTCCCCAAACAAAAAAACCACCGCCCCCCTCCTAAGCCCCCTTATCACCGGA‑TTAAACATTTACTGGCGAAACGGTTCCGCCTTGAATTTTTTCCGCCGATGGCATATCAAAATACCTATGCATTAGc < 1:784996/250‑1 (MQ=255) attaaaGTAGAGCTAAAACCGAATTTCGGAAAAACCTTTTTTTTTTTAAATGCTCTAAACGGCGGTGAAATTGATATTTATCCTGAATTTACC‑GCAAAGGTGCTGGAA‑GCCTTAGTGCAAGGGTTCCCCGAAAAAAAAAATCATCCCCGCTCTCCTGAATCCCCTTATCAGTTGA‑GTAAACATTTGCTGGCGGAACAGTTCCGGTTTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGc < 1:198127/247‑1 (MQ=255) tCAAGGAGAGTTTAAACCGAATTTGGCCAAACCCTTTTTTTTATTCAATCCCCTAAACAGCGGGAAAATTGATATTTACCCTAAATTTACCGGCACA‑GGGC‑GGAATGCCTTAGTGCAAGTGTTCCCCGAACAAAAAAACCACCCCCGCTCCCCTTAATCCCGTTATCAGC‑GAGGAAAAAAATTACGGGCGAAAGAGTCCGGGTTTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAg < 1:26535/251‑1 (MQ=255) cAAGTAGAGCTTAAACCGAATTTCGGAAAACCCTTTTTTTTATTCAATGCTCTAAACGGCGGTAAAATTGATATTTATCCTAAATTTCCCGGCACA‑GTGCTGGAA‑GCCTTAGTGAAAGTGTTCCCCAAAAAAAAAAATCATCCCCGCTCTCCTGAACCCACTTATCAGCTGA‑GTAAAAAATTACTGGCGAAACAGTTCCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGc < 1:693667/248‑1 (MQ=255) agCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATAc > 1:785843/1‑229 (MQ=255) gCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGc > 1:809480/1‑216 (MQ=255) ccGAATTTCGGCAAACCCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTAAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAAAAAAAAAATCATCCCCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTCCTGGCGGAACAGTTCCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATgg < 1:93388/251‑1 (MQ=255) ccGAATTTCGGAAAACCCTTTTTTTTATTCAATGCTCTCAACAGCGGTAAAATTGATTTTTATCCTGAATTTCCCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAAAAAAAAAATCATCCCCGCTCCCCTAAACCCATTTATCAGCTGA‑GTAAACAATTACTGGCGAAACAGTTCCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATgg < 1:827159/251‑1 (MQ=255) ccGAATTTCGAAAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGATTTTCCCGGCACA‑GTGGTGAAA‑CCCTTAGTGCGAGTTTTACCAAAAAAAAAAAATCATCCCCGCCCTCCTCAAACCTCTTATCAGCTGA‑GAAAACAATTCCTGGCGGAACAGTTCCGGCTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATgg < 1:829424/251‑1 (MQ=255) aattttCGGCAAACCCTTTTTTTTATTCAATGCTCTCAACAGCGGTAAAATTGATATTTATCCTGAATTTCCCGGCACG‑GTGCTGGAA‑GCCTTAGTGCATGTTTTCCCCGAAAAAAAAAATCACCACCGCTCCCTTGAAACCATTTACCAGCTGA‑GTAAAAAATTACTGGGGAAACAGTTCCGGCTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAg < 1:42868/248‑1 (MQ=255) cggaaaaactttttttttATTCAATTCTCTCAACGGGGGTGAAATTGATATTTATCCTAAATTTCCGGGCACA‑GGTCTGAAA‑GCTTTTTTGCATGTGTTACACGAACAAAAAAACCATCACGGTTCTCCTGAACCCACTTATCGGATGA‑GTAAACAATTCCTGGCGAAAAAGTTCCGTCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAacac < 1:698217/239‑1 (MQ=255) cGGCAAACCCTCTTTTTTATTCAATGCTCTCAACAGCGGTAAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGAAA‑GCCTTAGTGCAAGTGTTCCCCAAAAAAAAAAATCATCCCCGCTCTCCGGAAACCCCTTATCAGCTGA‑GAAAACAATTACTGGCGGAACAGTTCCGTCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAacac < 1:485402/251‑1 (MQ=255) cGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTCCCGGCACA‑GTGCTGGAA‑GCTTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAACCCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTAATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAacac < 1:606771/251‑1 (MQ=255) cGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATAcc > 1:144305/1‑214 (MQ=255) aacccttttttttATTAAACGCTCCCAAAAGGGGTAAAATTGATATTTCTCCTGAATTTCCGGGCACG‑GTGCGGGAA‑GCCTTGGTTCAAGTGTACCCCAAACAAAAAAACCACCACCGCCCTCCTGAACCCACTTACCGGCTGA‑GTAAACAATTAGTGGCGAAACAGTTCCGGTTTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATggg < 1:30578/244‑1 (MQ=255) aaaCCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTCCCGGCACA‑GTGCTGGAA‑GCCTTAGTGAAAGTGTTACCCGAAAAAAAAAATCATCCCCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACGGGCGGAACAGTTCCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATggg < 1:713702/251‑1 (MQ=255) ctTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGca > 1:93712/1‑251 (MQ=255) ttttttATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTCCCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTCCCCGAACAAAAAAATCATCCCCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGcaa < 1:173171/251‑1 (MQ=255) ttttttATTAAATGCTCTCAACAGGGGTAAAATTGATATTTATCCTAAATTTCCCGGCACA‑GTGCTGGAA‑GCCTTAGTGAAGGTTTTCCCCAAAAAAAAAAATCATCCCCGCTCTCCTGAACCCATTTATCAGCTGA‑GTAAACAATCACGGGCGGAACAGTTCCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGcaa < 1:633422/251‑1 (MQ=255) tttttATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTCCCGGCACA‑GTGCTGGAA‑GCCTTAGTGAAAGTGTTCCCCGAACAAAAAAATCATCCCCGCTCTCCTGAACCCACTTATCAGCTGA‑GTAAACAATTCCTGGCGGAACATTTCCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAacac < 1:181070/238‑1 (MQ=255) tttttATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGcaa > 1:41749/1‑250 (MQ=255) tttttATTCAATGCTCTCAACAGCGGTAAAATTGATATTTATCCTGAATTTCCCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAATTGTTACCCGAAAAAAAAAACCACCCCCGCTCTCTTAAACCCACTTACCAGCGAA‑GAAAACAATTCCGGGCGGAACATTCCCGGCTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGcaac < 1:847477/251‑1 (MQ=255) aTTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATgg > 1:453327/1‑182 (MQ=255) tctcAACAGCGGTGAAATTGATATTTATCCTGAATTTCCCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTCCCCGAAAAAAAAAATCATCCCCGCTCTCCTGAAACCACTTATCGGCTGA‑GTAAACAATTACTGGCGGAACATTCCCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAacac < 1:789496/224‑1 (MQ=255) ctcAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTAca > 1:129139/1‑251 (MQ=255) ctcAACAGCGGTAAAATTGATATTTATCCTGAATTTCCCGGCACA‑GTGCTGGAA‑GCCTTAGTGAAAGTGTTACCCAAAAAAAAAAATCACCCCCCCTCCCCTGAACCCACTTATCAGCTGA‑GTAAACAATTCCTGGCGAAACAGTCCCGGTTTAATTTTTTACCGCCGATGGCATATCAAAATACCTATGCa < 1:674891/192‑1 (MQ=255) cAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAAAAAAAAAATCATCCCCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGAAACAGTTCCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTAcatc < 1:408292/251‑1 (MQ=255) cGGTAAAATTGATATTTATCCTAAATTTCCCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTCCCCGAAAAAAAAAACCACCCCCGCTCTCCTGAACCCACTTATCAGCGGA‑GTAAAAAATTCCTGGCGAAACAGTTCGGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTAcatcat < 1:838262/247‑1 (MQ=255) tGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCGGGAA‑GCCTTAGTGAAAGTGTTACCCAAAAAAAAAAATCATCCCCGCTCTCCTGAACCCATTTATCAGCTGA‑GTAAAAAATTACTGGGGGAACAGTCCCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAg < 1:168061/251‑1 (MQ=255) gAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAacac > 1:760568/1‑193 (MQ=255) tACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGACTATGGAGCAAAAAATGGGCTTGCAACAACCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTcaca > 1:120405/1‑250 (MQ=255) gTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAAttt > 1:718189/1‑249 (MQ=255) gTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAAttt > 1:641263/1‑249 (MQ=255) gTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAAttt > 1:765111/1‑249 (MQ=255) gTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAAttt > 1:568216/1‑249 (MQ=255) ggAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCtcgat > 1:74803/1‑250 (MQ=255) ccTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATTGAGt > 1:408259/1‑250 (MQ=255) ccTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGt > 1:295253/1‑250 (MQ=255) gTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGAGACATTCGCGCCGGCTTCacac > 1:261164/1‑226 (MQ=255) gtgtTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATaa > 1:725322/1‑251 (MQ=255) aaaaaaaaaTCACCCCCGCTCCCCTGAACCCACTTATCAGTTGA‑GTAAACAATTACGGGCGGAACATTTCCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAAt < 1:401786/249‑1 (MQ=255) aaaTCATCACCGCTCTCCGGAACCCACTTATCAGCTGA‑GTAAACAATTACTGGCGAAACAGTTCCGGCTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGATGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAg < 1:666286/251‑1 (MQ=255) ccaccccccctcccctaaaccccccTTATCAGCTGA‑GAAAAAAATTCCTGGCGGAACATTTCCGGTTTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGc < 1:729371/227‑1 (MQ=255) atcatcCCCGCTCTCCTAAAACCACTTATCAGCTGA‑GTAAACAATTCCGGGCGGAACAGTTCGGGTTTAATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGc < 1:447846/251‑1 (MQ=255) aagagccagccTGAACCCACTTATCAGCTGA‑GAAAACAATTACTGGCGAAACAGTTCCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCAttag < 1:386218/242‑1 (MQ=255) cccGCTCCCCTAAACCCATTTAACAGCTGA‑GAAAAAAATTCCGGGGGGAACAGTTCCGGTTTAATTTTTTACCGCCGATGGCATATCAAAATACCTACGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCAttagt < 1:381522/250‑1 (MQ=255) ttgtttaaaagagccattttATCAGCGGA‑GAAAACAATTCCTGGGGAAACAGTTCCGGTTTAATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCAttagtt < 1:628333/233‑1 (MQ=255) ccGCTCCCCAGAAACCACTTATCAGCTGA‑GAAAACAATTCCTGGCGGAACAGTTCCGGTTTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCAttagtt < 1:536683/251‑1 (MQ=255) gCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCAttagttta > 1:555225/1‑251 (MQ=255) ctcCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGc < 1:88223/54‑1 (MQ=255) ccctaaacccACTTATCAGCTGA‑GTAAACAATTACTGGCGAAACAGTTCCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTc < 1:377920/243‑1 (MQ=255) cccTGAAACCACTTATCAGCTGA‑ATAAACAATTACGGGCGGAACAGTTCCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTc < 1:708612/250‑1 (MQ=255) aaacccttttATCAGCTGA‑GTAAAAAATTACTGGCGGAACAGTTCCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCatat < 1:436920/243‑1 (MQ=255) ccACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCGTATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGt > 1:366889/1‑250 (MQ=255) ccACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGc > 1:233241/1‑230 (MQ=255) cTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCt < 1:848241/43‑1 (MQ=255) cTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCatat > 1:512102/1‑244 (MQ=255) cTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCAc > 1:134035/1‑250 (MQ=255) ccAGCTGA‑GAAAAAAATTACGGGCGGAACAGTTCCGG‑TTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATggg < 1:806245/113‑1 (MQ=255) cTGA‑GTAAACATTTACTGGCGGAACAGTTCCGGTTTTAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAAc < 1:289822/250‑1 (MQ=255) gA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCAttagt > 1:762966/1‑223 (MQ=255) cAATTACGGGCGGAACAGTTCCGGTTTAATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCAttag < 1:680606/215‑1 (MQ=255) aTTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCCTATCAAAATACCTATGCATTAGCAGAGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGtt > 1:760271/1‑251 (MQ=255) ttACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGc > 1:671856/1‑89 (MQ=255) cgggCGGAACAGTCCCGGCTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAc < 1:551218/249‑1 (MQ=255) | AATATGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAATTTCGGCAAAACCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACA‑GTGCTGGAA‑GCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGA‑GTAAACAATTACTGGCGGAACAGTTCCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAC > 1/1650539‑1651014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |