| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 959,722 | 0 | C | T | 53.2% | 31.7 / 78.3 | 62 | intergenic (+9473/+43337) | unknown/unknown | tRNA‑Leu‑CAG/tRNA‑Lys‑TTT |
| Reads supporting (aligned to +/- strand): ref base C (27/2); new base T (0/33); total (27/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.45e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.69e-09 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGGAAGAATTTAATTTGCTGACCATGATTCGCCCGACCATGATCGTGCCGGAAAGCAAACGAGTAGACAGAATGCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAACCTGCATTTTAAAGTTACCTCCGCCGACAGCCGCCGCATCATCCAACTCCGTGTCACCG > 1/959492‑959944 | cGGAAGAATTTAATTTGCTGACCATGATTCGCCCGACCATGATCGTGCCGGAAAGCAAACGAGTAGACAGAATGCTGAAGGATTTCCTTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTGGGGTTG‑GGTGACCATTGAAGATGTGTTGGAAAAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGGGGCGGATATTCGCCAGTTTTCCCGCCACACCTATGc < 1:155459/250‑1 (MQ=255) ttatttggCTGACAATGATCCGCCCGACAATGATCGTGCCGAAAAGAAAAGGAGTAGAAAGAATGCGGAAGGATTTCCGTTCGGGGCGCTTCCACAGGGGGATTGTGGGGGATAAATG‑GGGCGGGGGGGGGGGTTG‑GGGGACCATGGAAGAGGTGTGGAAAAAAA‑TGGTGGGGGATATGAAAGACGAATTCGAGAAAGAAGAGGGGGGGGATATCCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCa < 1:161028/244‑1 (MQ=255) ttGCTGACCATGATCCCCCCGACCATGTTCGTGCGGGAAAGAAAACGAGTAGAAAGAATGCTGAAGGATTTCCTTTCCGGGCCCTTCCACATGGCGTTTGTGGTGGATGATTT‑GGGCGCGGTGTGGGTTTT‑GGTGCCAATGGAAGATGTGTGGAAAAAAA‑TCGGCGGGAATATTAAAGACAAATTCGATAAAGAAGAAGGGGGGAATATTCCCCATTTTTCCCGCCACACCTATGCCGTGCGGGCATTGAc < 1:496353/251‑1 (MQ=255) tGATTCGCCCGACCATGATCGTGCCGGAAAGCAAACGAGTAGACAGAATGCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCa > 1:60606/1‑236 (MQ=255) atccGCCCGACCATGATGGGGCGGAAAAGAAAAGGAGTAGACAGAATGTTGAAGGTTTTCCGTCCCGAGCGCTCCCACAGGGCGTTTGTGGGGGATGAATC‑CGGCGGGGTGTGGGGTTT‑GGTGACAATTGAAGATGTGTGGAAAAAAA‑TCGTGGGGGATATTGAAGACGAATTCGAGGAAGAAGAGGGGGCGGATATTCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAg < 1:607624/247‑1 (MQ=255) aTTCGCCCGACCATGATCGTGCCGGAAAGCAAACGAGTAGACAGAATGCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGTTTGTGGTGGATGAATT‑CGGCGGGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTGGGGGATATTGAAGACGAATTCGATGAAGAAGAAGGGGGGGATATCCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGa < 1:115457/251‑1 (MQ=255) gACCATGATCGTGCCGGAAAGCAAACGAGTAGACAGCATGCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGACGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTACCGCCACACCTATGCCGTGCGGGCATTGACGGACCTTGCAGATTttaat > 1:849730/1‑250 (MQ=255) gACCATGATCGTGCCGGAAAGCAAACGAGTAGACAGAATGCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTtcaat > 1:124164/1‑250 (MQ=255) aCCATGATCGTGCCGGAAAGCAAACGAGTAGACAGAATGCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTttaatca > 1:633192/1‑251 (MQ=255) ccgaaaaGCAAAGGAGTAGACAGAATGCTGAAGGTTTTCCGTTCCGGGCTCTTCCACGGGGCGATTGTGGTGGATGAATT‑CGGGGCGGTGTGGGGTTT‑GGTGACCATTGAAGATGTGTTGAAACAAA‑TCGTGGGGGATATTGAAGACAAATTCGATGAAGAAGAAGGGGGGGATATCCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATAc < 1:727647/247‑1 (MQ=255) ccgaaaaGCAAACGAGTAGACAGAATGCTGAAGGATTTCCGTTCCGGGCGCTTCCACAGGGCGTTTGTGGTGGATGAATT‑CGGCGGGGTGTGGGGTTT‑GGTGACCATTGAAGATGTGTTGGAAAAAA‑TGGTCGGGGATATTGAAGACGAATTCGATGAAAAAGAGGGGGCGGATATCCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATAc < 1:481661/247‑1 (MQ=255) ccGGAAAGCAACCGAGTAGACAGAATGCTGAAGGATTTCCGTTCCGAGCGCTTCCACAGGGCGTTTGTGGGGGATGATTT‑CGGCGGGGTGTGGGTTTT‑GGTGACCTTTGAAGTTGTGTGGGAACAAA‑TCGTGGGGGATATTGAAGACGATTTCGAGGAAGAAGAGGGGGGGAATATCCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATAc < 1:685301/251‑1 (MQ=255) aaaaGAAAACGAGTAGACAGAATGCTGAAGGATTTCCGTCCCGGGCGTTCCCACAGGGGGTTTGGGGGGGATGAATT‑CGGCGGGGTGTGGGGTTT‑GGTGACCATTGAAGATGTGTGGGAAAAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAAAAGAGGGGGGGGATTTTCCCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATAccc < 1:247505/249‑1 (MQ=255) cAAACGAGTAGACAGAATGCTGAGGGATTCCCTTTCGGGGCGCTCCCAAATGGCGTTTGGGGTGGATAAATT‑CGGCGGGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCTTCGGGAATATTGAAGACAAATTCGATGAAGAAGAAGGGGCGAATATTCGCCATTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATa < 1:610789/249‑1 (MQ=255) aaaCGAGTAGACAGATTGCTGAAGGTTTTCCGTTCCGGGCGCTTCCACATGGCGTTGGTGGTGGATGAATG‑CGGCGGGGTGTGGGGTTG‑GGTGACAATTGAAGATGTGTGGAAACAAA‑TCGGGGGGGATATTGAAGACAAATCCGAGGAAGAAGAGGGGGGGGATATTCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGc < 1:63934/251‑1 (MQ=255) aaggAGTAGACAGAATGCTGAAGTTTTTCCGTCCCGAGCGCTCCCAAAGGGCGTTTGTGGTGGATGAATG‑CGGCGGGGTGTGGGGTTT‑GGTGACCATTGAAGATGTGTGGGAAAAAA‑TCGGGGGGAATATGAAAGACAAATTCGAGGAAAAAGAGGGGGCGAATATCCGCCAGTTTCCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGcc < 1:709439/248‑1 (MQ=255) aacggttAGAAAGAATGCTGAAGGATTTCCGTTCCGGGCGTTTCCCCATGGGGTTTGTGGTGGATGAATG‑GGGCGGGGGGTCGGTTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTGGGGGATATTGAAGACAAATGCGAGGAAGAAGAGGGGGCGGATATTCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGcc < 1:208403/245‑1 (MQ=255) cGAGTAGACAGAATGCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATAc > 1:412092/1‑239 (MQ=255) gACAGAATGCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATgaaga > 1:755334/1‑251 (MQ=255) aaGAATGCTGAAGGTTTTCCGTTCCGAGCGCTTCCACATGGGGTTTGTGGTGGATGAGTT‑GGGCGGGGGGT‑GGGTTTGGGTGACCATTGAAGATGTGTTGGAAAAAA‑TCGTCGGGTATATTAAAGACAAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGaagaag < 1:846996/250‑1 (MQ=255) gAATGCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGTAGTg > 1:396471/1‑251 (MQ=255) attGCTGAAGGTTTCCCGTTCCGAGCTCTCCCACTGGGCGGTGGTGTTGGAGAAATG‑CGGCGGGGTGTGGGGTTG‑GGTGACCTTTGAAGTTGTGTTGAAAAAAG‑TCGTCGGGAATTTTGAAGACAAATTGGTAGAAGAAGAAGGGGCGAATATCCGCCATTTTCCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTgg < 1:286811/249‑1 (MQ=255) aaTGCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACGCCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTg < 1:616083/250‑1 (MQ=255) gCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGaca > 1:747457/1‑251 (MQ=255) ttaaagtttttCTGTTCCGTGCTCTTCCAAATGGCGTTGGTGGTGGAT‑AATTGCGGCGGGGTGTGGGTTTT‑GGGGACTATTGAATATGTGTGAAAACAAG‑CCGCCGGGTTTATTGAAGACGAATTGGAAAAAGAAGAAGTGGTGGATATTCCCCATTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGacac < 1:798564/243‑1 (MQ=255) agagggtttcccgtgccgAGCGCTTCCACAGGGCGTTTGTGGGGGATGAATT‑GGGCGGGGTGTGGGGTTT‑GGTGACCATAGAAGATGTGTTGAAAAAAA‑TCGGGGGGAATATTGAAGACGAATTCGATGAAAAAGAAGTGGCGGATATCCCCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGacac < 1:31424/240‑1 (MQ=255) aaGGTTTTCCGTTCGGGGCGCTTCCACAGGGCGTTTGGGGTGGATGAATT‑GGGGGGGGTGTGGGGTTT‑GGTGCCCATTGAAGATGTGTTGGAAAAAA‑TCGTGGGGGATATTGAAGACGAATTCGATGAAGAAGAGGTGGCGGATATTCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCAt < 1:787334/251‑1 (MQ=255) tttCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATcggc > 1:595990/1‑250 (MQ=255) tttCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGCGGCGGATATTCGCCAGCTTTCCCGCCCCACCTATTCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATctgc‑g > 1:603839/1‑251 (MQ=255) cgAGCGTTTCCACAGGGGGTTTGGGGTGGATGAATT‑GGGGGGGGTGTGGGGTTT‑GGTACCCATTAAAGTTGTGTGGGAACAAT‑CCGGGGGGGATATGGAAGACGAATTCGATGAAGAAGAGGGGGCGGATATTCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGa < 1:610844/251‑1 (MQ=255) tCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGGGATGCAg > 1:151699/1‑248 (MQ=255) cccACATGGCGTTTGTGGTGGATGAATT‑CGGCGGGGTGTGGGTTTT‑GTTGACCATTAAAGTTGGGTTGAAACAAA‑CCGTGGGGGATATTAAAGACAAATTCGATAAAAAAGAAGGGGCGGATATCCGCCATTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAAt < 1:307696/203‑1 (MQ=255) caTGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGCGGGTTTGG‑GATGccgggaatcg > 1:223897/1‑242 (MQ=255) tGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATAc > 1:512924/1‑193 (MQ=255) ggCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGAc > 1:339547/1‑163 (MQ=255) ggCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGGGATGCAGGCAtttcgc > 1:808014/1‑246 (MQ=255) ggTGTGGGGTTG‑GGTGCCCATAAAAGATGTG‑TGGAAAAAATTGGTGGGGAATATTAAAAACGAATTGGAAAAAAAAAAAGGGGCGGATATCCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAAtt < 1:29586/250‑1 (MQ=255) gtgtCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGGTGCAGGGATTTGGCCATTTTCCGAAAAGCGGCGAAGaaaataa > 1:138310/1‑247 (MQ=255) gtgtCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGGTTTGTGAAGGAAGCATTTGGGTATTTgtcggaaagcgggggagaaaataa > 1:860708/1‑228 (MQ=255) tggggTTT‑GGTGACAATTGAAGATGTGTGGGAACAAA‑TGGTGGGGGATATGGAAGACAAATTCGATGAAGAAGAGGTGGCGGATATCCGCCAGTTTCCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCt < 1:146663/249‑1 (MQ=255) gtgcccattaaggttgtgTTGGAAAACG‑TCGTGGGGGATATAGAAGAAGAATTCGTAGAAGAAGAGGGGGGGGTTACTCGCCTGTTTCCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAAcc < 1:559061/236‑1 (MQ=255) gtgccaaTTGAAGGTGTTTTGAAACAAT‑GCGTGGGGTATATTGAAGACGAATACGATGAAAAAAAGGTGGGGGTTATTCGCCAGTTTTACCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAAcc < 1:737206/244‑1 (MQ=255) gTGACCATTGAAGATGTGTTGGAAAAAA‑TCGTGGGGAATATTGAAGACGAATTCGATGAAGAAGAGGGGGCGGATATCCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAAcc < 1:202861/250‑1 (MQ=255) tGACCATGGAAGTGGTGTTGGAAAAAA‑TCGTGGGGGATATTGAAGAAGAATTCGATGAAGAAGAAGTGGCGGATATCCGCCATTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAACCt < 1:510314/250‑1 (MQ=255) ccATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACAt > 1:386993/1‑121 (MQ=255) ccATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTTGTGATGCAGGCATTCGGGTATTTTCCCAAAAGCGGCGGAGAAAATAAGCTGGGTaaacctc > 1:826024/1‑244 (MQ=255) ccATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTTGTGATGCAGGCATTCGGCTATTTGCCGAAAAGCGGCGGAGAAAATAc > 1:15966/1‑235 (MQ=255) aGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGGGGTGCCGGCATTTGGCCATTTGCCGGAAAGCGGCGCAGAAAATAAGGTGGATAAACTGGATTTTTAAg > 1:534088/1‑251 (MQ=255) aTGTGTTGGAACAAA‑TCGGCGGGGATATTGAAGACAAATTCGATGAAGAAGAGGTGGCGGATATCCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAACCTGCATTTTAAAg < 1:552094/249‑1 (MQ=255) aTGTGTGGAAACAAA‑TCGTGGGGGATATAGAAGAAAAATTGGATGAAGAAGAAGTGGCGATTATCCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAACCTGCATTTTAAAg < 1:510162/249‑1 (MQ=255) gtgtTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGGTTTGTGATGCAGGGATTTGGCTATTTTCCGAAAAGCGGCGGAGAAAATAAGCTGGGTAAACTTCATTTTTAAgataa > 1:511511/1‑247 (MQ=255) tgggAACAAA‑TCGTGGGGTATATTGAAGCCGAATCCGATGAAGAAGAGGGGGCGGATATCCGCCATTTTCCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAACCTGCATTTTAAAGTTACCTc < 1:716203/249‑1 (MQ=255) tgggAAAAAA‑TCGGCGGGAATATTGAAGACAAATTCGAAGAAAAAGAGGGGGCGGATATCCGCCAGTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAACCTGCATTTTAAAGTTACCTc < 1:450250/249‑1 (MQ=255) tgtaaaagagacgggggATATTGAAGACAAATTCGATGAAAAAGAGGGGGGGAATATCCGCCAGTTTCCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAACCTGCATTTTAAAGTTACCTcc < 1:27068/237‑1 (MQ=255) aaa‑TCGTGGGGGATATTGAAGACGAATTCAAGAAAGAAGAGGGGGGGGATATCCGCCAGTTTCCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAACCTGCATTTTAAAGTTACCTCCGCCGAc < 1:218706/251‑1 (MQ=255) a‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTTGGGGTGCAGGGATTCGGCTATTTTCCCAAAAACGGCGAAGAAAATAAGCTGGGTAACCCGCATTTTAAAATTACCTccccccgcca > 1:448522/1‑243 (MQ=255) gggATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGGGATGCAGGCATTCGGCTATTTTCCGAAACGCGGCGGAGAAATTACGCTGGATAAACTGCATTTTTAAGTTACCCCCCCCCACAgccgccc > 1:219897/1‑249 (MQ=255) tatTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTTGTGATGCAGGCATTCGGCTATTTTCCCAAACGCGGCGAAGAAAATACGCTGGGTAAACCGCATTTTTAAGTTACCTCCCCCGACAGCCCCCGcatc > 1:314119/1‑250 (MQ=255) tatTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTTGGGATGCAGGCCTTCCGCTATTTTCCCGAACGCGGCGAAGAAAATACGCTGGGTAACCCGCATTTTTAAGTTACCTCCCCCGACAgccgccccctca > 1:774853/1‑245 (MQ=255) gAAGACGAATTCGATGAAGAAGAGGGGGCGGATTTTCGCCATTTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAACCTGCATTTTAAAGTTACCTCCGCCGACAGCCGCCGCATCATcc < 1:357684/250‑1 (MQ=255) gAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTTGGGGTGCAGGCATTCGGCTATTTTCCGAAAAGCGGCGGAGAAATTACGCGGGGTAACCTGCATTTTTAAGTTACCTCCGCCGACAGCCGCCGCCTCAACCAAATcc > 1:572576/1‑250 (MQ=255) aaaaagaagGGGGGGATTTCCGCCAGTTTCCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAACCTGCATTTTAAAGTTACCTCCGCCGACAGCCGCCGCATCATCCAACTCCGTGTCACCg < 1:391989/246‑1 (MQ=255) | CGGAAGAATTTAATTTGCTGACCATGATTCGCCCGACCATGATCGTGCCGGAAAGCAAACGAGTAGACAGAATGCTGAAGGATTTCCGTTCCGAGCGCTTCCACATGGCGATTGTGGTGGATGAATT‑CGGCGCGGTGTCGGGTTT‑GGTGACCATTGAAGATGTGTTGGAACAAA‑TCGTCGGGGATATTGAAGACGAATTCGATGAAGAAGAAGTGGCGGATATTCGCCAGCTTTCCCGCCACACCTATGCCGTGCGGGCATTGACGGACATTGCAGATTTCAATCAACAATTCAATACCCAATACGCCGATGAAGAAGTGGACACCATCGGC‑GGTTTGGTGATGCAGGCATTCGGCTATTTGCCGAAACGCGGCGAAGAAATTACGCTGGATAACCTGCATTTTAAAGTTACCTCCGCCGACAGCCGCCGCATCATCCAACTCCGTGTCACCG > 1/959492‑959944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |