New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	1	= 79041	58 (0.740)	10 (0.110) +CAGAAGC	3/384	8.1	12.6%	intergenic (–/+54900)	–/unknown	–/tRNA‑Ala‑GGC
	?	1	79042 =	76 (0.850)					intergenic (–/+54899)	–/unknown	–/tRNA‑Ala‑GGC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCAAATACAGGCGTTACAAAAAATGGTCACCGAACTGCAACGTTGGCACGACAACTGCCAAGGTAACGACTGCCCGGAATGCTCGATTTTGGAGGGCTTGAGTGAGTGAAAAGTGCGGTGATTTTTCATTGCAATTTTAAGTAGAAATATAACTAAAAAATCTCTCACGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/78792‑79041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGAAGCCAGAAGCCAGAAGCCAGAAGCCACCAAGATTATGTTGAAAATTCAGCCACACAACAAGCCTTCCTAAACGACCTCGACGAAAAACTTTGGTCTTCCGCCGACCGTCTCCGCCAGCAACTCGACGCCGCCAACTACAAACACATTGTGCTTGGCTTAATCTTCTTAAAATACATCTCCGACAGCTTCACCGCACAGCAAGACAAAATCCGTGT  >  1/79042‑79260                                                                                                                                                                                                                                                           |||||||                                                                                                                                                                                                                            ACCAAATACAGGCGTTACAAAAAATGGTCACCGAACTGCAACGTTGGCACGACAACTGCCAAGGTAACGACTGCCCGGAATGCTCGATTTTGGAGGGCTTGAGTGAGTGAAAAGTGCGGTGATTTTTCATTGCAATTTTAAGTAGAAATATAACTAAAAAATCTCTCACGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATGC                                                                                                                                                                                                                                   <  1:319554/251‑1    AAATACAGGCGTTACAAAAAATGGTCACCGAACTGCAACGTTGGCACGACAACTGCCAAGGTAACGACTGCCCGGAATGCTCGATTTTGGAGGGCTTGAGTGAGTGAAAAGTGCGGTGATTTTTCATTGCAATTTTAAGTAGAAATATAACTAAAAAATCTCTCACGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATGCAGA                                                                                                                                                                                                                                >  1:49393/1‑251      ATACAGGCGTTACAAAAAATGGTCACCGAACTGCAACGTTGGCACGACAACTGCCAAGGTAACGACTGCCCGGAATGCTCGATTTTGGAGGGCTTGAGTGAGTGAAAAGTGCGGTGATTTTTCATTGCAATTTTAAGTAGAAATATAACTAAAAAATCTCTCACGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATGCAGAAG                                                                                                                                                                                                                              >  1:212946/1‑251      ATACAGGCGTTACAAAAAATGGTCACCGAACTGCAACGTTGGCACGACAACTGCCAAGGTAACGACTGCCCGGAATGCTCGATTTTGGAGGGCTTGAGTGAGTGAAAAGTGCGGTGATTTTTCATTGCAATTTTAAGTAGAAATATAACTAAAAAATCTCTCACGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATGCAGAAG                                                                                                                                                                                                                              >  1:316927/1‑251      ATACAGGCGTTACAAAAAATGGTCACCGAACTGCAACGTTGGCACGACAACTGCCAAGGTAACGACTGCCCGGAATGCTCGATTTTGGAGGGCTTGAGTGAGTGAAAAGTGCGGTGATTTTTCATTGCAATTTTAAGTAGAAATATAACTAAAAAATCTCTCACGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATGCAGAAG                                                                                                                                                                                                                              >  1:338879/1‑251      ATACAGGCGTTACAAAAAATGGTCACCGAACTGCAACGTTGGCACGACAACTGCCAAGGTAACGACTGCCCGGAATGCTCGATTTTGGAGGGCTTGAGTGAGTGAAAAGTGCGGTGATTTTTCATTGCAATTTTAAGTAGAAATATAACTAAAAAATCTCTCACGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATGCAGAAG                                                                                                                                                                                                                              >  1:658039/1‑251               TTACAAAAAATGGTCACCGAACTGCAACGTTGGCACGACAACTGCCAAGGTAACGACTGCCCGGAATGCTCGATTTTGGAGGGCTTGAGTGAGTGAAAAGTGCGGTGATTTTTCATTGCAATTTTAAGTAGAAATATAACTAAAAAATCTCTCACGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATGCAGAAGCCAGAAGC                                                                                                                                                                                                                      >  1:335736/1‑250                                                                          CCCGGAATGCTCGATTTTGGAGGGCTTGAGTGAGTGAAAAGTGCGGTGATTTTTCATTGCAATTTTAAGTAGAAATATAACTAAAAAATCTCTCACGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATGCAGAAGCCAGAAGCCAGAAGCCAGAAGCCAGAAGCCACCAAGATTATGTTGAAAATTCAGCCACACAACAAGC                                                                                                                                                           <  1:340052/250‑1                                                                                                                                 ATTGCAATTTTAAGTAGAAATATAACTAAAAAATCTCTCACGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATGCAGAAGCCAGAAGCCAGAAGCCAGAAGCCAGAAGCCACCAAGATTATGTTGAAAATTCAGCCACACAACAAGCCTTCCTAAACGACCTCGACGGAAAACTTTGGTCTTCCGCCGACCGTCTCCGCCAGC                                                                                                   <  1:775974/251‑1                                                                                                                                                                         CGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATGCAGAAGCCAGAAGCCAGAAGCCAGAAG                                                                                                                                                                                                         <  1:50094/109‑1                                                                                                                                                                                                                                  CACTTTACAAAGGACAAATTTTATGCAGAAGCCAGAAGCCAGAAGCCAGAAGCCAGAAGCCACCAAGATTATGTTGAAAATTCAGCCACACAACAAGCCTTCCTAAACGACCTCGACGAAAAACTTTGGTCTTCCGCCGACCGTCTCCGCCAGCAACTCGACGCCGCCAACTACAAACACATTGTGCTTGGCTTAATCTTCTTAAAATACATCTCCGACAGCTTCACCGCACAGCAAGACAAAATCCGTGT  >  1:433317/1‑251                                                                                                                                                                                                                                                           |||||||                                                                                                                                                                                                                            ACCAAATACAGGCGTTACAAAAAATGGTCACCGAACTGCAACGTTGGCACGACAACTGCCAAGGTAACGACTGCCCGGAATGCTCGATTTTGGAGGGCTTGAGTGAGTGAAAAGTGCGGTGATTTTTCATTGCAATTTTAAGTAGAAATATAACTAAAAAATCTCTCACGCTTATCTTTTAAACATGCACAATTCCTATAAAATAGGTATATTTTTTTATTTACTCACTTTACAAAGGACAAATTTTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/78792‑79041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGAAGCCAGAAGCCAGAAGCCAGAAGCCACCAAGATTATGTTGAAAATTCAGCCACACAACAAGCCTTCCTAAACGACCTCGACGAAAAACTTTGGTCTTCCGCCGACCGTCTCCGCCAGCAACTCGACGCCGCCAACTACAAACACATTGTGCTTGGCTTAATCTTCTTAAAATACATCTCCGACAGCTTCACCGCACAGCAAGACAAAATCCGTGT  >  1/79042‑79260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.