breseq  version 0.35.4  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutation
evidence position mutation annotation gene description

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_004302 1 91 91 NA [0] [1] 2 –/r1tp01 –/Integrase
* * ÷ NC_004302 238 283 46 2 [1] [1] 2 r1tp01 Integrase
* * ÷ NC_004302 382 446 65 2 [1] [0] 2 r1tp01 Integrase
* * ÷ NC_004302 618 686 69 2 [1] [1] 2 r1tp01 Integrase
* * ÷ NC_004302 948 991 44 2 [1] [1] 2 r1tp01 Integrase
* * ÷ NC_004302 1063 1070 8 2 [1] [1] 2 r1tp01 Integrase
* * ÷ NC_004302 1256 1333 78 2 [1] [1] 3 r1tp01/r1tp02 Integrase/ORF2
* * ÷ NC_004302 2766 2891 126 2 [1] [1] 2 rro/tec Repressor protein/tec
* * ÷ NC_004302 2966 3373 408 2 [1] [0] 2 tec–[r1tp05] tec,[r1tp05]
* * ÷ NC_004302 3449 4421 973 2 [0] [1] 2 [r1tp05]–[r1tp07] [r1tp05],r1tp06,[r1tp07]
* * ÷ NC_004302 4496 5203 708 2 [1] [0] 2 [r1tp07]–[r1tp09] [r1tp07],r1tp08,[r1tp09]
* * ÷ NC_004302 5273 6189 917 2 [0] [1] 2 [r1tp09]–[r1tp10] [r1tp09],[r1tp10]
* * ÷ NC_004302 6256 7788 1533 2 [1] [0] 2 [r1tp10]–[r1tp12] [r1tp10],r1tp11,[r1tp12]
* * ÷ NC_004302 7859 7886 28 2 [0] [0] 2 r1tp12 ATP‑binding protein
* * ÷ NC_004302 8038 8071 34 2 [1] [0] 2 r1tp12 ATP‑binding protein
* * ÷ NC_004302 8143 8384 242 2 [0] [1] 2 r1tp12 ATP‑binding protein
* * ÷ NC_004302 8418 8514 97 2 [1] [1] 3 r1tp12 ATP‑binding protein
* * ÷ NC_004302 8583 10407 1825 2 [0] [1] 2 [r1tp13]–r1tp18 [r1tp13],r1tp14,r1tp15,r1tp16,r1tp17,r1tp18
* * ÷ NC_004302 10447 11202 756 2 [1] [1] 2 [r1tp19]–[r1tp20] [r1tp19],[r1tp20]
* * ÷ NC_004302 11325 11493 169 2 [1] [1] 3 [r1tp20]–[r1tp21] [r1tp20],[r1tp21]
* * ÷ NC_004302 11561 11719 159 2 [0] [1] 2 r1tp21 ORF21
* * ÷ NC_004302 11787 13463 1677 2 [1] [1] 3 [r1tp22]–[r1tp24] [r1tp22],r1tp23,[r1tp24]
* * ÷ NC_004302 13532 14022 491 2 [0] [0] 2 [r1tp24]–[r1tp25] [r1tp24],[r1tp25]
* * ÷ NC_004302 14096 15591 1496 2 [0] [1] 2 [r1tp25]–[r1tp27] [r1tp25],r1tp26,[r1tp27]
* * ÷ NC_004302 15666 15990 325 2 [1] [1] 2 r1tp27 Structural protein
* * ÷ NC_004302 16030 16148 119 2 [1] [1] 2 r1tp27 Structural protein
* * ÷ NC_004302 16219 16331 113 2 [1] [1] 2 [r1tp27]–[r1tp28] [r1tp27],[r1tp28]
* * ÷ NC_004302 16379 17219 841 2 [1] [1] 2 [r1tp28]–[r1tp29] [r1tp28],[r1tp29]
* * ÷ NC_004302 17837 17913 77 2 [1] [1] 2 r1tp29 putative terminase
* * ÷ NC_004302 17982 18029 48 2 [1] [1] 2 r1tp29 putative terminase
* * ÷ NC_004302 18363 18565 203 2 [1] [1] 2 [r1tp29] [r1tp29]
* * ÷ NC_004302 18869 18994 126 2 [1] [1] 2 r1tp30 DUF4355 domain‑containing protein
* * ÷ NC_004302 19109 19184 76 2 [1] [1] 2 r1tp31 Structural protein
* * ÷ NC_004302 19858 20026 169 2 [1] [1] 2 [r1tp31]–[r1tp32] [r1tp31],[r1tp32]
* * ÷ NC_004302 20297 20369 73 2 [0] [1] 2 r1tp33 ORF33
* * ÷ NC_004302 20455 20559 105 2 [1] [1] 2 r1tp33 ORF33
* * ÷ NC_004302 20565 20694 130 2 [1] [1] 3 [r1tp33]–[r1tp34] [r1tp33],[r1tp34]
* * ÷ NC_004302 20764 20923 160 2 [0] [1] 2 r1tp34 ORF34
* * ÷ NC_004302 21032 21091 60 2 [1] [1] 2 r1tp35 ORF35
* * ÷ NC_004302 21166 21413 248 2 [1] [0] 2 [r1tp35]–[r1tp36] [r1tp35],[r1tp36]
* * ÷ NC_004302 21544 21554 11 2 [1] [1] 2 [r1tp36] [r1tp36]
* * ÷ NC_004302 21618 21626 9 2 [1] [1] 2 r1tp37 Structural protein
* * ÷ NC_004302 21695 21761 67 2 [1] [1] 2 r1tp37 Structural protein
* * ÷ NC_004302 22079 22280 202 2 [1] [1] 2 [r1tp37]–[r1tp38] [r1tp37],[r1tp38]
* * ÷ NC_004302 22284 22587 304 2 [1] [1] 2 [r1tp38] [r1tp38]
* * ÷ NC_004302 22996 23012 17 2 [1] [0] 2 r1tp40 ORF40
* * ÷ NC_004302 24102 24139 38 2 [1] [1] 2 [r1tp41] [r1tp41]
* * ÷ NC_004302 24208 24230 23 2 [0] [1] 2 r1tp41/r1tp42 ORF41/ORF42
* * ÷ NC_004302 24293 24316 24 2 [1] [1] 2 r1tp41/r1tp42 ORF41/ORF42
* * ÷ NC_004302 24382 24510 129 2 [1] [1] 2 r1tp42 ORF42
* * ÷ NC_004302 24673 24716 44 2 [1] [0] 2 r1tp42 ORF42
* * ÷ NC_004302 24797 25087 291 2 [1] [1] 2 r1tp42 ORF42
* * ÷ NC_004302 25275 25352 78 3 [1] [0] 2 r1tp42 ORF42
* * ÷ NC_004302 25426 25521 96 3 [1] [1] 2 r1tp42 ORF42
* * ÷ NC_004302 25746 25816 71 2 [1] [1] 2 r1tp42 ORF42
* * ÷ NC_004302 25922 26167 246 2 [1] [1] 2 r1tp42 ORF42
* * ÷ NC_004302 26241 26446 206 2 [1] [1] 2 [r1tp42]–[r1tp43] [r1tp42],[r1tp43]
* * ÷ NC_004302 27099 27166 68 2 [1] [1] 2 r1tp43 ORF43
* * ÷ NC_004302 27333 27363 31 2 [1] [1] 2 r1tp44 ORF44
* * ÷ NC_004302 27422 27517 96 2 [1] [1] 2 r1tp44 ORF44
* * ÷ NC_004302 33008 33071 64 2 [1] [1] 2 [r1tp50] [r1tp50]
* * ÷ NC_004302 33286 33350 65 2 [1] [0] NA r1tp50/– ORF50/–